Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s1386 Capsella rubella HOM05D006843 ORTHO05D008517 4.1e-190 667.9 344 100.0
AL7G25850 Arabidopsis lyrata HOM05D006843 ORTHO05D008517 4.6e-165 584.7 344 87.8
AT4G26980 Arabidopsis thaliana HOM05D006843 ORTHO05D008517 3.3e-163 578.6 346 86.1
CARHR234590 Cardamine hirsuta HOM05D006843 ORTHO05D008517 3.2e-158 562.0 343 84.8
Thhalv10025611m.g Eutrema salsugineum HOM05D006843 ORTHO05D008517 3.0e-156 555.4 346 82.9
A03p56990 Brassica napus HOM05D006843 ORTHO05D008517 4.3e-147 525.0 348 78.7
C07p55080 Brassica napus HOM05D006843 ORTHO05D008517 8.1e-146 520.8 347 77.8
BcaC06g32719 Brassica carinata HOM05D006843 ORTHO05D008517 1.3e-140 503.4 349 76.5
Aa31LG5G10440 Aethionema arabicum HOM05D006843 ORTHO05D008517 1.8e-137 493.0 345 75.7
THA.LOC104809268 Tarenaya hassleriana HOM05D006843 ORTHO05D008517 1.0e-132 477.2 345 71.0
Thecc.07G035800 Theobroma cacao HOM05D006843 ORTHO05D008517 4.9e-127 458.4 336 70.2
Gohir.A01G079900 Gossypium hirsutum HOM05D006843 ORTHO05D008517 2.5e-126 456.1 336 70.5
Gohir.D01G067100 Gossypium hirsutum HOM05D006843 ORTHO05D008517 3.2e-126 455.7 336 70.5
Gorai.002G089000 Gossypium raimondii HOM05D006843 ORTHO05D008517 1.6e-125 453.4 336 70.2
Duzib268G1400 Durio zibethinus HOM05D006843 ORTHO05D008517 1.9e-123 446.4 336 69.3
CSS0043197 Camellia sinensis var. sinensis HOM05D006843 ORTHO05D008517 4.5e-120 435.3 341 66.3
Cpa.g.sc12.302 Carica papaya HOM05D006843 ORTHO05D008517 1.7e-119 433.3 341 67.2
Actinidia05093 Actinidia chinensis HOM05D006843 ORTHO05D008517 5.5e-118 428.3 342 65.2
BraA03t14769Z Brassica rapa HOM05D006843 ORTHO05D008517 1.3e-116 423.7 279 78.1
GSVIVG01037656001 Vitis vinifera HOM05D006843 ORTHO05D008517 3.9e-116 422.2 343 63.0
BolC7t46005H Brassica oleracea HOM05D006843 ORTHO05D008517 1.5e-115 420.2 267 79.8
Manes.03G129700 Manihot esculenta HOM05D006843 ORTHO05D008517 3.7e-114 415.6 343 63.3
Cfa020337 Carpinus fangiana HOM05D006843 ORTHO05D008517 1.4e-113 413.7 337 62.3
Rhsim06G0217400 Rhododendron simsii HOM05D006843 ORTHO05D008517 2.0e-112 409.8 343 63.8
CiPaw.11G190100 Carya illinoinensis HOM05D006843 ORTHO05D008517 2.6e-112 409.5 339 62.8
Prupe.4G214500 Prunus persica HOM05D006843 ORTHO05D008517 5.9e-112 408.3 339 62.5
CsaV3_7G021850 Cucumis sativus L. HOM05D006843 ORTHO05D008517 7.7e-112 407.9 307 66.1
MELO3C013160.2 Cucumis melo HOM05D006843 ORTHO05D008517 1.3e-111 407.1 299 67.2
Haze_09681 Corylus avellana HOM05D006843 ORTHO05D008517 1.7e-111 406.8 337 61.4
Hma1.2p1_0673F.1_g201400 Hydrangea macrophylla HOM05D006843 ORTHO05D008517 2.2e-111 406.4 301 66.8
TWI39G1240 Tripterygium wilfordii HOM05D006843 ORTHO05D008517 2.9e-111 406.0 338 62.7
TAR624G1415 Trochodendron aralioides HOM05D006843 ORTHO05D008517 2.9e-111 406.0 340 64.1
Dinv22258 Davidia involucrata HOM05D006843 ORTHO05D008517 1.4e-110 403.7 328 64.3
ClCG09G010830 Citrullus lanatus HOM05D006843 ORTHO05D008517 2.5e-110 402.9 332 63.0
Ciclev10008752m.g Citrus clementina HOM05D006843 ORTHO05D008517 9.4e-110 401.0 341 61.9
QL08p010009 Quercus lobata HOM05D006843 ORTHO05D008517 7.9e-109 397.9 335 62.7
CiPaw.12G130200 Carya illinoinensis HOM05D006843 ORTHO05D008517 1.4e-108 397.1 336 61.0
Sc03g0008560 Simmondsia chinensis HOM05D006843 ORTHO05D008517 2.3e-108 396.4 335 61.5
Nn1g03519 Nelumbo nucifera HOM05D006843 ORTHO05D008517 3.0e-108 396.0 340 60.6
PGR083G2310 Punica granatum HOM05D006843 ORTHO05D008517 2.0e-107 393.3 341 61.3
Glyma.14G022900 Glycine max HOM05D006843 ORTHO05D008517 2.5e-107 392.9 339 60.2
Cc05_g13830 Coffea canephora HOM05D006843 ORTHO05D008517 4.3e-107 392.1 340 59.7
HanXRQChr11g0337271 Helianthus annuus HOM05D006843 ORTHO05D008517 7.4e-107 391.3 342 60.8
Glyma.02G291800 Glycine max HOM05D006843 ORTHO05D008517 1.3e-106 390.6 339 60.8
arahy.Tifrunner.gnm1.ann1.J1CT6Y Arachis hypogaea HOM05D006843 ORTHO05D008517 1.7e-106 390.2 344 60.2
arahy.Tifrunner.gnm1.ann1.Q92UKX Arachis hypogaea HOM05D006843 ORTHO05D008517 1.7e-106 390.2 344 60.2
MD11G1217200 Malus domestica HOM05D006843 ORTHO05D008517 6.3e-106 388.3 339 59.9
Peaxi162Scf00235g00218 Petunia axillaris HOM05D006843 ORTHO05D008517 6.3e-106 388.3 301 65.1
LjContig00272g0007634 Lotus japonicus HOM05D006843 ORTHO05D008517 1.8e-105 386.7 342 59.6
Nitab4.5_0003495g0070 Nicotiana tabacum HOM05D006843 ORTHO05D008517 1.8e-105 386.7 301 64.8
MSTRG.6924 Avicennia marina HOM05D006843 ORTHO05D008517 4.1e-105 385.6 342 58.8
Potri.011G090700 Populus trichocarpa HOM05D006843 ORTHO05D008517 4.1e-105 385.6 352 59.4
arahy.Tifrunner.gnm1.ann1.0IA02T Arachis hypogaea HOM05D006843 ORTHO05D008517 6.9e-105 384.8 344 59.9
arahy.Tifrunner.gnm1.ann1.57CCTN Arachis hypogaea HOM05D006843 ORTHO05D008517 6.9e-105 384.8 344 59.9
arahy.Tifrunner.gnm1.ann1.BV1YAY Arachis hypogaea HOM05D006843 ORTHO05D008517 6.9e-105 384.8 344 59.9
arahy.Tifrunner.gnm1.ann1.H57FKH Arachis hypogaea HOM05D006843 ORTHO05D008517 6.9e-105 384.8 344 59.9
Nitab4.5_0007360g0010 Nicotiana tabacum HOM05D006843 ORTHO05D008517 9.1e-105 384.4 297 64.6
CANSAT11G0475 Cannabis sativa HOM05D006843 ORTHO05D008517 1.5e-104 383.6 301 66.1
PGSC0003DMG402022316 Solanum tuberosum HOM05D006843 ORTHO05D008517 2.6e-104 382.9 332 58.7
Ca_06326_v3 Cicer arietinum L. HOM05D006843 ORTHO05D008517 3.4e-104 382.5 342 59.1
MBI18_g14135_MAGBIO Magnolia biondii HOM05D006843 ORTHO05D008517 3.4e-104 382.5 326 59.8
TPR.G1211 Trifolium pratense HOM05D006843 ORTHO05D008517 4.5e-104 382.1 342 57.0
Solyc07g064630.4 Solanum lycopersicum HOM05D006843 ORTHO05D008517 1.0e-103 380.9 304 63.2
Eucgr.F00758 Eucalyptus grandis HOM05D006843 ORTHO05D008517 1.7e-103 380.2 303 63.7
Medtr5g092970 Medicago truncatula HOM05D006843 ORTHO05D008517 2.9e-103 379.4 341 57.8
Phvul.008G268300 Phaseolus vulgaris HOM05D006843 ORTHO05D008517 2.9e-103 379.4 341 60.1
AUR62015782 Chenopodium quinoa HOM05D006843 ORTHO05D008517 3.8e-103 379.0 339 59.9
Lalb_Chr04g0248381 Lupinus albus HOM05D006843 ORTHO05D008517 5.0e-103 378.6 340 59.7
Sed0013659 Sechium edule HOM05D006843 ORTHO05D008517 1.1e-102 377.5 333 59.8
VMungo0647G1675 Vigna mungo HOM05D006843 ORTHO05D008517 2.5e-102 376.3 342 59.9
Ah.04g165900 Amaranthus hybridus HOM05D006843 ORTHO05D008517 7.2e-102 374.8 337 59.1
Aqoxy4G01855 Aquilegia oxysepala HOM05D006843 ORTHO05D008517 2.1e-101 373.2 344 57.3
Lsat_1_v5_gn_7_109981 Lactuca sativa HOM05D006843 ORTHO05D008517 2.7e-101 372.9 308 62.3
Sopen07g032830 Solanum pennellii HOM05D006843 ORTHO05D008517 3.6e-101 372.5 311 61.7
Psat2g011720 Pisum sativum HOM05D006843 ORTHO05D008517 1.4e-100 370.5 334 56.9
Migut.M01756 Erythranthe guttata HOM05D006843 ORTHO05D008517 8.8e-100 367.9 336 56.5
Sabra11G0086300 Salix brachista HOM05D006843 ORTHO05D008517 3.3e-99 365.9 341 58.9
RcHm_v2.0_Chr5g0040061 Rosa chinensis HOM05D006843 ORTHO05D008517 7.4e-99 364.8 338 58.6
FAN25G2076 Fragaria x ananassa HOM05D006843 ORTHO05D008517 1.3e-98 364.0 303 62.4
FvH4_3g22820 Fragaria vesca HOM05D006843 ORTHO05D008517 1.7e-98 363.6 303 62.4
ECA236G1023 Erigeron canadensis HOM05D006843 ORTHO05D008517 8.2e-98 361.3 311 60.5
FAN16G2069 Fragaria x ananassa HOM05D006843 ORTHO05D008517 1.4e-97 360.5 340 57.9
Hma1.2p1_0673F.1_g201390 Hydrangea macrophylla HOM05D006843 ORTHO05D008517 3.8e-95 352.4 314 58.9
SGA_v2.0_scaffold165G38275 Striga asiatica HOM05D006843 ORTHO05D008517 5.5e-94 348.6 315 56.2
EL10Ac4g07802 Beta vulgaris HOM05D006843 ORTHO05D008517 7.2e-94 348.2 388 51.3
CAN.G337.136 Capsicum annuum HOM05D006843 ORTHO05D008517 6.7e-92 341.7 265 63.0
DCAR_012722 Daucus carota HOM05D006843 ORTHO05D008517 1.1e-91 340.9 336 56.8
Lj8A169G88 Lonicera japonica HOM05D006843 ORTHO05D008517 1.7e-90 337.0 298 60.4
unitig_8.g4621 Utricularia gibba HOM05D006843 ORTHO05D008517 1.7e-87 327.0 366 50.8
Thhalv10026846m.g Eutrema salsugineum HOM05D006843 ORTHO05D008517 1.9e-86 323.6 269 67.3
Zm00001eb224560 Zea mays HOM05D006843 ORTHO05D008517 3.2e-86 322.8 270 60.0
PSO063G3629 Papaver somniferum HOM05D006843 ORTHO05D008517 4.0e-84 315.8 343 53.1
HPP92_013325 Vanilla planifolia HOM05D006843 ORTHO05D008517 8.8e-84 314.7 351 48.1
PSO170G2271 Papaver somniferum HOM05D006843 ORTHO05D008517 1.3e-82 310.8 345 52.2
Zm00001eb273720 Zea mays HOM05D006843 ORTHO05D008517 1.9e-78 297.0 278 57.2
Pp3c9_17980 Physcomitrium patens HOM05D006843 ORTHO05D008517 6.8e-76 288.5 305 51.8
Mapoly0001s0246 Marchantia polymorpha HOM05D006843 ORTHO05D008517 7.0e-73 278.5 301 50.8
AUR62020435 Chenopodium quinoa HOM05D006843 ORTHO05D008517 1.9e-70 270.4 269 55.8
CBR_g34195 Chara braunii HOM05D006843 ORTHO05D008517 3.2e-57 226.5 362 39.0
SMO234G0011 Selaginella moellendorffii HOM05D006843 ORTHO05D008517 8.6e-55 218.4 258 46.5
Atru.chr2.3418 Acer truncatum HOM05D006843 ORTHO05D008517 1.9e-49 200.7 133 70.7
Hund02000 Selenicereus undatus HOM05D006843 ORTHO05D008517 6.0e-48 195.7 202 54.5
ATR0490G005 Amborella trichopoda HOM05D006843 ORTHO05D008517 8.1e-45 185.3 185 52.4
vmacro11722 Vaccinium macrocarpon HOM05D006843 ORTHO05D008517 1.2e-40 171.4 188 51.6
Psat4g156200 Pisum sativum HOM05D006843 ORTHO05D008517 1.0e-39 168.3 133 60.2
Psat5g064560 Pisum sativum HOM05D006843 ORTHO05D008517 2.3e-39 167.2 133 59.4
Psat7g029280 Pisum sativum HOM05D006843 ORTHO05D008517 6.6e-39 165.6 133 58.6
Haze_01866 Corylus avellana HOM05D006843 ORTHO05D008517 8.1e-37 158.7 188 48.9
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 5.2e-36 156.0 122 66.4
Os06g0679700 Oryza sativa ssp. japonica HOM05D006843 ORTHO05D008517 1.1e-33 148.3 159 47.2
CDE02G2447 Ceratophyllum demersum HOM05D006843 ORTHO05D008517 1.3e-23 114.8 86 66.3
Psat3g185160 Pisum sativum HOM05D006843 ORTHO05D008517 7.4e-22 109.0 85 62.4
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 8.1e-21 105.5 94 56.4
MCO05G180 Micromonas commoda HOM05D006843 ORTHO05D008517 2.4e-20 104.0 273 28.2
Dinv20053 Davidia involucrata HOM05D006843 ORTHO05D008517 2.4e-12 77.4 117 40.2
Psat7g126680 Pisum sativum HOM05D006843 ORTHO05D008517 7.6e-11 72.4 62 54.8
ATR0926G001 Amborella trichopoda HOM05D006843 ORTHO05D008517 3.2e-09 67.0 56 57.1
Rhsim01G0029400 Rhododendron simsii HOM05D001219 ORTHO05D001017 4.3e-06 56.6 79 31.6
Cre01.g054650 Chlamydomonas reinhardtii HOM05D006843 ORTHO05D008517 7.4e-06 55.8 121 28.1


User provided reference genes

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