Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 2.0e-158 562.4 279 100.0
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 5.4e-148 527.7 279 93.5
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.1e-145 520.0 279 91.4
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 9.8e-142 506.9 282 89.7
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 2.9e-141 505.4 279 89.6
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 9.2e-140 500.4 283 89.0
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 4.6e-139 498.0 283 89.4
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 4.6e-139 498.0 283 89.4
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 2.3e-138 495.7 284 88.4
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 2.3e-138 495.7 284 88.4
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 6.6e-138 494.2 283 88.7
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 1.9e-137 492.7 284 88.4
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 1.9e-137 492.7 284 88.4
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.6e-136 489.6 281 88.3
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 4.1e-132 474.9 275 88.0
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 7.3e-129 464.2 283 83.4
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.1e-127 460.3 283 80.2
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 1.4e-127 459.9 283 82.0
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 2.3e-127 459.1 283 79.9
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 6.8e-127 457.6 282 81.6
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 1.5e-126 456.4 283 82.0
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 3.8e-125 451.8 283 80.6
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 3.8e-125 451.8 282 79.4
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 4.9e-125 451.4 283 80.9
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 2.4e-124 449.1 283 80.2
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 5.4e-124 448.0 282 78.7
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 5.4e-124 448.0 283 79.9
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 1.2e-123 446.8 283 79.5
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 1.2e-123 446.8 283 79.5
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 1.2e-123 446.8 288 76.4
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 2.1e-123 446.0 283 79.9
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 6.0e-123 444.5 282 76.6
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 1.1e-121 440.3 276 80.1
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 8.7e-114 414.1 277 73.6
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 6.7e-106 387.9 279 65.6
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 6.9e-103 377.9 287 64.5
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 9.0e-103 377.5 283 64.0
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 1.5e-102 376.7 281 64.8
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 4.5e-102 375.2 287 64.1
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 3.2e-100 369.0 281 63.3
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 7.1e-100 367.9 281 64.1
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 2.1e-99 366.3 283 62.2
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 2.7e-99 365.9 281 64.4
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.7e-99 365.9 282 64.2
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 6.0e-99 364.8 281 64.4
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 6.0e-99 364.8 283 62.2
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 6.0e-99 364.8 283 64.7
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 6.0e-99 364.8 283 61.1
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 7.9e-99 364.4 287 63.1
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.0e-98 364.0 281 64.1
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 1.3e-98 363.6 281 61.2
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 2.3e-98 362.8 280 62.5
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 2.3e-98 362.8 281 62.6
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 8.7e-98 360.9 284 62.7
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 1.5e-97 360.1 281 63.3
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 1.5e-97 360.1 278 62.2
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 3.3e-97 359.0 289 61.2
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 4.3e-97 358.6 290 62.8
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 7.4e-97 357.8 282 60.3
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 9.6e-97 357.5 282 59.9
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 2.1e-96 356.3 280 61.1
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 2.1e-96 356.3 275 62.2
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 2.1e-96 356.3 286 61.9
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 3.7e-96 355.5 283 60.8
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 3.7e-96 355.5 281 60.9
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 6.2e-96 354.8 283 60.4
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.1e-95 354.0 279 59.9
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.4e-95 353.6 283 59.7
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 1.8e-95 353.2 287 61.0
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 1.8e-95 353.2 282 61.3
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 2.4e-95 352.8 284 58.8
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 3.1e-95 352.4 283 61.5
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 4.0e-95 352.1 286 59.8
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 5.3e-95 351.7 279 59.1
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 5.3e-95 351.7 280 59.3
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 6.9e-95 351.3 279 59.9
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 6.9e-95 351.3 283 61.8
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 9.0e-95 350.9 275 60.4
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 9.0e-95 350.9 287 61.0
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 9.0e-95 350.9 282 61.3
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.0e-94 349.7 283 60.8
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 2.6e-94 349.4 279 60.6
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 5.8e-94 348.2 289 59.2
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 7.6e-94 347.8 290 58.3
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 1.0e-93 347.4 283 61.1
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 1.3e-93 347.1 287 58.2
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 2.9e-93 345.9 286 58.7
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 3.8e-93 345.5 287 58.5
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 6.5e-93 344.7 281 58.0
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 6.5e-93 344.7 285 57.9
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 8.4e-93 344.4 282 58.5
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 8.4e-93 344.4 277 59.2
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 1.1e-92 344.0 243 65.0
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 1.4e-92 343.6 282 60.3
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 1.4e-92 343.6 279 59.5
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 1.9e-92 343.2 281 57.7
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 1.9e-92 343.2 280 58.9
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 5.5e-92 341.7 283 59.4
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 7.1e-92 341.3 278 59.0
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 9.3e-92 340.9 243 64.6
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 1.2e-91 340.5 286 60.8
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 1.2e-91 340.5 285 59.6
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 2.1e-91 339.7 284 59.2
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 2.1e-91 339.7 281 59.4
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 2.7e-91 339.3 286 58.0
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 4.6e-91 338.6 285 56.5
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 6.0e-91 338.2 279 59.1
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 7.9e-91 337.8 287 58.9
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 1.3e-90 337.0 286 57.7
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 2.3e-90 336.3 280 60.4
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 3.0e-90 335.9 279 58.8
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 3.9e-90 335.5 284 57.0
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 5.1e-90 335.1 283 57.2
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 6.7e-90 334.7 260 59.6
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 6.7e-90 334.7 260 59.6
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 6.7e-90 334.7 287 57.1
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 1.9e-89 333.2 280 58.2
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 3.3e-89 332.4 279 56.3
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 9.6e-89 330.9 287 55.7
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 9.6e-89 330.9 239 65.3
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 2.1e-88 329.7 282 57.4
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 3.7e-88 328.9 243 64.2
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 1.4e-87 327.0 280 56.4
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 1.4e-87 327.0 282 58.9
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 2.4e-87 326.2 314 54.1
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 5.3e-87 325.1 283 55.8
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 5.9e-86 321.6 281 55.5
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 7.6e-86 321.2 287 54.7
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 1.0e-85 320.9 279 54.8
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.3e-85 320.5 279 54.5
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 3.8e-85 318.9 239 61.5
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 6.5e-85 318.2 243 60.5
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 4.2e-84 315.5 279 55.9
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 7.2e-84 314.7 303 52.8
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 9.3e-84 314.3 282 55.7
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 1.2e-83 313.9 281 55.9
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.6e-83 313.5 282 57.1
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 4.6e-83 312.0 280 55.7
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 1.8e-82 310.1 280 54.3
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 2.5e-81 306.2 281 53.4
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 3.7e-80 302.4 279 52.3
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 1.2e-78 297.4 280 51.1
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 4.5e-78 295.4 251 57.8
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.3e-74 283.1 271 51.7
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 1.1e-73 280.8 243 55.1
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 4.4e-73 278.9 280 50.0
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 2.2e-72 276.6 184 69.6
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.1e-68 264.2 250 54.4
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 2.5e-68 263.1 197 60.9
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 1.5e-65 253.8 247 49.4
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 6.7e-58 228.4 231 47.2
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 1.2e-57 227.6 242 45.5
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 4.4e-57 225.7 185 57.3
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 2.7e-54 216.5 287 40.8
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 1.3e-53 214.2 146 75.3
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 1.7e-53 213.8 146 75.3
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 1.7e-53 213.8 146 75.3
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.8e-50 203.8 191 52.9
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 3.5e-46 189.5 162 57.4
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 1.0e-45 188.0 113 84.1
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.3e-45 187.6 182 57.1
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 4.2e-44 182.6 162 54.3
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 4.0e-42 176.0 208 42.3
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.2e-41 174.5 164 53.7
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 5.7e-41 172.2 248 42.7
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 3.5e-38 162.9 239 34.3
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 3.6e-27 126.3 74 87.8
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-17 92.8 124 37.1
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 5.1e-13 79.3 187 29.4


User provided reference genes

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