Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 1.2e-189 666.4 339 100.0
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 3.7e-167 591.7 339 88.8
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 4.5e-165 584.7 343 88.0
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 3.0e-161 572.0 341 86.2
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.1e-160 570.1 338 86.7
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 2.0e-160 569.3 339 87.3
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 3.3e-160 568.5 341 86.2
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 2.8e-143 512.3 342 80.7
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 4.8e-143 511.5 342 80.7
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 1.1e-142 510.4 341 80.4
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 1.8e-142 509.6 341 80.1
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 7.7e-141 504.2 338 77.5
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 1.3e-140 503.4 342 80.1
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 1.1e-139 500.4 343 80.5
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 3.3e-139 498.8 340 79.1
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 1.6e-138 496.5 340 79.1
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 1.6e-138 496.5 340 79.1
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 1.1e-134 483.8 347 78.7
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.9e-131 473.0 339 74.6
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 4.3e-131 471.9 341 74.5
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 9.5e-131 470.7 340 75.3
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.6e-130 469.9 339 75.2
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.3e-129 466.1 340 74.1
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 6.8e-129 464.5 340 74.4
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 6.8e-129 464.5 344 73.5
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 1.0e-124 450.7 340 74.1
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 1.3e-124 450.3 340 74.1
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 6.8e-121 438.0 340 72.1
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 6.8e-121 438.0 340 72.1
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 2.9e-119 432.6 339 72.0
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 2.9e-119 432.6 340 72.4
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.9e-118 429.9 341 70.7
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 3.5e-117 425.6 343 67.3
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 4.6e-117 425.2 344 66.9
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.3e-116 422.9 344 66.6
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.6e-116 421.4 337 67.7
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 5.6e-115 418.3 357 64.7
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 9.5e-115 417.5 346 66.2
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.2e-114 417.2 348 65.5
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 1.4e-113 413.7 346 66.2
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 3.4e-112 409.1 345 64.1
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.4e-112 408.7 344 65.4
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 5.8e-112 408.3 345 64.1
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 7.5e-112 407.9 344 65.4
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 2.2e-111 406.4 345 64.1
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 2.9e-111 406.0 346 66.2
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 2.9e-111 406.0 345 63.8
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 6.4e-111 404.8 346 63.0
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 1.4e-110 403.7 352 63.4
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 3.2e-110 402.5 350 64.6
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 5.4e-110 401.7 345 64.9
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 1.6e-109 400.2 346 64.7
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 7.8e-109 397.9 344 64.5
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 8.6e-108 394.4 346 62.7
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 8.6e-108 394.4 345 63.5
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 3.3e-107 392.5 345 62.0
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.6e-107 391.7 344 63.4
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 9.5e-107 391.0 350 63.1
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 2.8e-106 389.4 346 63.0
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.1e-105 386.0 344 62.8
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 2.0e-104 383.3 345 62.6
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.6e-104 382.9 344 62.5
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 3.4e-104 382.5 347 63.4
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 3.4e-104 382.5 347 62.0
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 3.4e-104 382.5 350 62.0
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 1.3e-103 380.6 337 62.3
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 2.9e-103 379.4 349 63.0
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 4.9e-103 378.6 341 61.6
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 2.4e-102 376.3 342 64.0
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 4.6e-101 372.1 405 56.0
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 6.0e-101 371.7 342 62.9
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 1.0e-100 370.9 345 61.7
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 2.3e-100 369.8 393 55.2
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 3.0e-100 369.4 345 60.9
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 3.0e-100 369.4 347 60.8
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 1.1e-99 367.5 346 60.1
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 1.1e-99 367.5 345 60.3
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 1.2e-98 364.0 340 61.2
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 1.6e-98 363.6 345 58.3
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 1.6e-98 363.6 345 58.8
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 3.6e-98 362.5 344 62.5
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 4.7e-98 362.1 326 63.5
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 4.7e-98 362.1 326 63.5
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 6.2e-98 361.7 347 60.5
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 3.1e-97 359.4 414 53.4
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 5.3e-97 358.6 344 59.9
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 9.0e-97 357.8 345 59.1
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 5.8e-96 355.1 343 59.2
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 7.6e-96 354.8 346 59.2
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 7.6e-96 354.8 346 61.8
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 7.6e-96 354.8 345 60.0
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.1e-94 350.9 350 59.1
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 5.4e-94 348.6 346 59.8
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 9.3e-94 347.8 347 59.1
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 3.5e-93 345.9 342 59.9
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 4.6e-93 345.5 349 59.9
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 6.0e-93 345.1 345 59.1
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 7.8e-93 344.7 348 59.5
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 1.3e-92 344.0 349 58.5
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 1.1e-91 340.9 349 58.5
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 1.1e-91 340.9 348 58.9
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 4.3e-91 339.0 334 60.2
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 9.6e-91 337.8 394 54.3
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 1.3e-90 337.4 326 61.0
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 3.6e-90 335.9 335 60.3
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 3.6e-90 335.9 341 59.2
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 4.8e-90 335.5 348 59.2
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 8.1e-90 334.7 281 64.1
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 1.1e-89 334.3 358 58.1
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 5.3e-89 332.0 325 61.2
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 1.5e-88 330.5 341 58.7
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 5.8e-88 328.6 301 62.8
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 7.6e-88 328.2 344 56.1
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 8.4e-87 324.7 336 57.4
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 5.4e-86 322.0 320 61.2
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 2.7e-85 319.7 351 56.4
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 3.5e-85 319.3 339 56.3
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 3.5e-85 319.3 347 56.2
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 3.5e-85 319.3 346 54.9
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 4.6e-85 318.9 346 54.6
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 6.0e-85 318.5 344 55.5
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 6.0e-85 318.5 345 57.1
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 7.9e-85 318.2 346 54.6
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 7.4e-83 311.6 345 54.2
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 9.6e-83 311.2 351 52.1
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.1e-82 310.1 348 53.7
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 3.7e-82 309.3 338 58.3
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 1.7e-79 300.4 332 52.7
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.9e-79 299.7 352 52.0
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.9e-78 297.0 328 54.0
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 2.5e-78 296.6 204 80.4
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 4.2e-78 295.8 342 54.4
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 2.1e-77 293.5 277 64.3
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 4.6e-77 292.4 342 53.2
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 3.9e-76 289.3 342 49.7
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 2.1e-74 283.5 351 51.0
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.4e-73 280.8 243 63.8
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 5.3e-73 278.9 346 51.7
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.2e-72 277.7 341 49.9
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 3.4e-72 276.2 343 51.6
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 4.5e-72 275.8 352 50.6
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 3.2e-70 269.6 278 59.0
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 2.5e-67 260.0 261 58.2
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 6.5e-63 245.4 341 49.6
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 2.7e-53 213.4 262 51.9
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 2.0e-51 207.2 344 44.5
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 2.8e-34 150.2 349 35.2
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 2.9e-31 140.2 395 32.2
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 8.5e-31 138.7 248 41.5
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 1.2e-27 128.3 150 52.0
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 4.4e-19 99.8 157 42.7
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 1.8e-17 94.4 89 57.3
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.8e-17 94.4 157 42.0
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 1.0e-12 78.6 230 30.4
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 8.9e-12 75.5 197 33.0
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 5.4e-09 66.2 355 25.1
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 1.7e-07 61.2 157 37.6
Pp3c18_2430 Physcomitrium patens HOM05D017133 ORTHO05D019609 5.6e-06 56.2 259 24.3
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 7.3e-06 55.8 213 27.2


User provided reference genes

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