Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 1.9e-43 178.7 88 100.0
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 6.0e-37 157.1 88 89.8
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 6.0e-37 157.1 88 89.8
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 1.6e-34 149.1 88 84.1
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 2.8e-34 148.3 88 84.1
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 1.4e-33 146.0 88 81.8
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 9.0e-33 143.3 88 78.4
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 1.2e-32 142.9 88 79.5
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 2.6e-32 141.7 88 78.4
C07p56050 Brassica napus HOM05D004838 ORTHO05D005373 3.4e-32 141.4 88 77.3
BolC7t46082H Brassica oleracea HOM05D004838 ORTHO05D005373 3.4e-32 141.4 88 77.3
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 7.6e-32 140.2 88 78.4
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 7.6e-32 140.2 88 78.4
A03p57930 Brassica napus HOM05D004838 ORTHO05D005373 4.9e-31 137.5 90 75.6
BraA03t14857Z Brassica rapa HOM05D004838 ORTHO05D005373 1.1e-27 126.3 92 69.6
BcaC09g50503 Brassica carinata HOM05D004838 ORTHO05D005373 5.6e-27 124.0 88 71.6
A01p19650 Brassica napus HOM05D004838 ORTHO05D005373 5.6e-27 124.0 88 71.6
C01p24680 Brassica napus HOM05D004838 ORTHO05D005373 5.6e-27 124.0 88 71.6
BolC1t02417H Brassica oleracea HOM05D004838 ORTHO05D005373 5.6e-27 124.0 88 71.6
BraA01t01898Z Brassica rapa HOM05D004838 ORTHO05D005373 5.6e-27 124.0 88 71.6
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 1.6e-26 122.5 88 67.0
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 3.5e-21 104.8 88 62.5
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 2.5e-14 82.0 90 50.0
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 2.5e-14 82.0 99 47.5
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 5.5e-14 80.9 98 50.0
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 7.2e-14 80.5 94 50.0
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 9.4e-14 80.1 102 45.1
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.6e-13 79.3 102 45.1
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 1.6e-13 79.3 95 46.3
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 2.7e-13 78.6 96 47.9
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 3.6e-13 78.2 96 49.0
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 3.6e-13 78.2 93 50.5
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 3.6e-13 78.2 93 48.4
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 6.1e-13 77.4 96 45.8
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 6.1e-13 77.4 94 51.1
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 7.9e-13 77.0 91 47.3
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 7.9e-13 77.0 99 49.5
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 7.9e-13 77.0 100 49.0
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 1.8e-12 75.9 97 47.4
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 2.3e-12 75.5 96 47.9
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 3.0e-12 75.1 93 49.5
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 3.9e-12 74.7 109 43.1
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 5.1e-12 74.3 96 47.9
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 5.1e-12 74.3 93 48.4
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 8.8e-12 73.6 95 46.3
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 1.1e-11 73.2 93 41.9
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 1.1e-11 73.2 93 46.2
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 1.5e-11 72.8 97 45.4
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 1.5e-11 72.8 97 47.4
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 1.5e-11 72.8 94 48.9
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.3e-11 71.6 101 45.5
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 3.3e-11 71.6 97 43.3
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 4.3e-11 71.2 91 45.1
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 4.3e-11 71.2 98 43.9
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 5.7e-11 70.9 94 43.6
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 7.4e-11 70.5 87 51.7
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 9.7e-11 70.1 93 40.9
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 9.7e-11 70.1 93 48.4
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 1.3e-10 69.7 95 46.3
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 1.3e-10 69.7 98 42.9
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 1.3e-10 69.7 98 42.9
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.7e-10 69.3 96 43.8
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 1.7e-10 69.3 93 43.0
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 2.2e-10 68.9 96 46.9
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 2.2e-10 68.9 88 40.9
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 2.2e-10 68.9 93 41.9
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 3.7e-10 68.2 95 47.4
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 3.7e-10 68.2 93 41.9
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 4.8e-10 67.8 89 40.4
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 4.8e-10 67.8 89 40.4
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 6.3e-10 67.4 95 46.3
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 1.4e-09 66.2 94 45.7
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 1.4e-09 66.2 84 42.9
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 1.4e-09 66.2 94 43.6
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 1.8e-09 65.9 93 45.2
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 1.8e-09 65.9 94 41.5
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 2.4e-09 65.5 90 45.6
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 3.1e-09 65.1 94 40.4
MBI18_g27682_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 3.1e-09 65.1 84 44.0
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 4.1e-09 64.7 97 38.1
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 5.3e-09 64.3 95 40.0
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 5.3e-09 64.3 92 41.3
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 1.2e-08 63.2 94 42.6
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 1.2e-08 63.2 91 39.6
unitig_699.g19386 Utricularia gibba HOM05D004838 ORTHO05D005373 1.2e-08 63.2 91 44.0
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 1.5e-08 62.8 94 41.5
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 2.0e-08 62.4 96 43.8
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 2.0e-08 62.4 96 42.7
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 3.4e-08 61.6 96 43.8
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 3.4e-08 61.6 89 40.4
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 5.9e-08 60.8 90 45.6
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 5.9e-08 60.8 94 37.2
unitig_27.g24815 Utricularia gibba HOM05D004838 ORTHO05D005373 7.7e-08 60.5 90 41.1
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 1.3e-07 59.7 91 39.6
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 1.3e-07 59.7 99 38.4
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 1.7e-07 59.3 91 40.7
QL05p081093 Quercus lobata HOM05D004838 ORTHO05D005373 1.7e-07 59.3 86 34.9
Thecc.06G200800 Theobroma cacao HOM05D004838 ORTHO05D005373 1.7e-07 59.3 90 42.2
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 2.2e-07 58.9 102 38.2
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 2.2e-07 58.9 86 40.7
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 3.8e-07 58.2 94 35.1
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 5.0e-07 57.8 104 38.5
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 6.5e-07 57.4 102 39.2
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 6.5e-07 57.4 101 37.6
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 1.4e-06 56.2 95 42.1
Sed0022545 Sechium edule HOM05D004838 ORTHO05D005373 1.4e-06 56.2 88 40.9
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 2.5e-06 55.5 89 42.7
Migut.H01015 Erythranthe guttata HOM05D004838 ORTHO05D005373 2.5e-06 55.5 94 41.5
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 2.5e-06 55.5 91 44.0
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 2.5e-06 55.5 91 44.0
CSS0040113 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.2e-06 55.1 105 37.1
Migut.H01016 Erythranthe guttata HOM05D004838 ORTHO05D005373 4.2e-06 54.7 105 37.1
SGA_v2.0_scaffold70G23461 Striga asiatica HOM05D004838 ORTHO05D005373 5.5e-06 54.3 93 35.5
Solyc12g005600.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 9.4e-06 53.5 84 41.7


User provided reference genes

Program Settings