Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s1242 Capsella rubella HOM05D003772 ORTHO05D004509 4.8e-77 291.2 159 100.0
AL7G24270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 5.3e-76 287.7 159 98.1
AT4G28330 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 2.6e-75 285.4 159 97.5
Thhalv10026455m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 4.2e-73 278.1 159 94.3
CARHR236040 Cardamine hirsuta HOM05D003772 ORTHO05D004509 2.1e-72 275.8 159 95.0
Sp7g26290 Schrenkiella parvula HOM05D003772 ORTHO05D004509 8.0e-72 273.9 159 93.7
BcaNung01575 Brassica carinata HOM05D003772 ORTHO05D004509 8.8e-71 270.4 159 92.5
BcaC09g50489 Brassica carinata HOM05D003772 ORTHO05D004509 9.8e-70 266.9 159 91.2
C01p24810 Brassica napus HOM05D003772 ORTHO05D004509 9.8e-70 266.9 159 91.2
A01p19750 Brassica napus HOM05D003772 ORTHO05D004509 2.2e-69 265.8 159 90.6
BraA01t01906Z Brassica rapa HOM05D003772 ORTHO05D004509 2.2e-69 265.8 159 90.6
AT4G28340 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 2.8e-69 265.4 158 90.5
A08p20120 Brassica napus HOM05D003772 ORTHO05D004509 4.4e-62 241.5 151 88.1
BraA08t33971Z Brassica rapa HOM05D003772 ORTHO05D004509 4.4e-62 241.5 151 88.1
Aa31LG2G22190 Aethionema arabicum HOM05D003772 ORTHO05D004509 8.3e-61 237.3 148 87.2
THA.LOC104804060 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 3.5e-59 231.9 159 79.9
BcaC07g38325 Brassica carinata HOM05D003772 ORTHO05D004509 2.9e-50 202.2 149 74.5
C08p10800 Brassica napus HOM05D003772 ORTHO05D004509 2.9e-50 202.2 149 74.5
BolC8t48755H Brassica oleracea HOM05D003772 ORTHO05D004509 4.4e-46 188.3 150 72.7
Ciclev10016940m.g Citrus clementina HOM05D003772 ORTHO05D004509 2.7e-43 179.1 139 70.5
THA.LOC104801171 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 2.3e-42 176.0 157 59.2
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 3.0e-42 175.6 149 64.4
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 3.9e-42 175.3 163 60.1
Atru.chr6.2987 Acer truncatum HOM05D003772 ORTHO05D004509 5.0e-42 174.9 140 67.9
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 5.0e-42 174.9 141 66.7
Aa31LG5G2950 Aethionema arabicum HOM05D003772 ORTHO05D004509 8.6e-42 174.1 145 61.4
AT4G03600 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 8.6e-42 174.1 160 57.5
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 8.6e-42 174.1 151 63.6
Aa31LG1G8940 Aethionema arabicum HOM05D003772 ORTHO05D004509 1.9e-41 172.9 154 61.0
Thhalv10029253m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 3.3e-41 172.2 154 60.4
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 4.3e-41 171.8 151 60.3
BcaB03g12567 Brassica carinata HOM05D003772 ORTHO05D004509 7.3e-41 171.0 149 69.8
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 7.3e-41 171.0 150 61.3
AL6G49180 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 9.5e-41 170.6 155 57.4
CARHR003060 Cardamine hirsuta HOM05D003772 ORTHO05D004509 1.2e-40 170.2 143 62.2
Carub.0001s0283 Capsella rubella HOM05D003772 ORTHO05D004509 1.6e-40 169.9 141 63.1
Thhalv10008772m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 1.6e-40 169.9 141 62.4
BcaC07g42237 Brassica carinata HOM05D003772 ORTHO05D004509 2.1e-40 169.5 142 62.7
C08p52680 Brassica napus HOM05D003772 ORTHO05D004509 2.1e-40 169.5 142 62.7
BolC8t52794H Brassica oleracea HOM05D003772 ORTHO05D004509 2.1e-40 169.5 142 62.7
A09p68240 Brassica napus HOM05D003772 ORTHO05D004509 2.8e-40 169.1 142 62.7
BraA09t42159Z Brassica rapa HOM05D003772 ORTHO05D004509 2.8e-40 169.1 142 62.7
RcHm_v2.0_Chr2g0126711 Rosa chinensis HOM05D003772 ORTHO05D004509 2.8e-40 169.1 163 57.7
Sp1g02590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 2.8e-40 169.1 141 62.4
AL1G13270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 3.6e-40 168.7 141 62.4
AT1G03730 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 3.6e-40 168.7 141 62.4
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 3.6e-40 168.7 160 59.4
BcaC07g42231 Brassica carinata HOM05D003772 ORTHO05D004509 6.2e-40 167.9 143 61.5
BcaC07g42232 Brassica carinata HOM05D003772 ORTHO05D004509 6.2e-40 167.9 143 61.5
TWI14G0986 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 6.2e-40 167.9 147 61.2
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 6.2e-40 167.9 165 57.0
Duzib052G1162 Durio zibethinus HOM05D003772 ORTHO05D004509 1.4e-39 166.8 148 60.8
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 1.4e-39 166.8 144 62.5
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 1.4e-39 166.8 144 62.5
Glyma.12G113500 Glycine max HOM05D003772 ORTHO05D004509 1.8e-39 166.4 157 59.2
Manes.13G145756 Manihot esculenta HOM05D003772 ORTHO05D004509 2.3e-39 166.0 146 61.0
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 3.1e-39 165.6 144 61.8
Manes.13G145808 Manihot esculenta HOM05D003772 ORTHO05D004509 3.1e-39 165.6 146 61.0
CsaV3_7G004480 Cucumis sativus L. HOM05D003772 ORTHO05D004509 4.0e-39 165.2 169 54.4
Glyma.06G292300 Glycine max HOM05D003772 ORTHO05D004509 5.2e-39 164.9 139 63.3
ClCG00G003560 Citrullus lanatus HOM05D003772 ORTHO05D004509 8.9e-39 164.1 156 57.1
ClCG07G002860 Citrullus lanatus HOM05D003772 ORTHO05D004509 8.9e-39 164.1 156 57.1
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 8.9e-39 164.1 147 59.9
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 8.9e-39 164.1 147 59.9
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 8.9e-39 164.1 147 59.9
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 8.9e-39 164.1 149 59.1
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 8.9e-39 164.1 141 61.7
MELO3C018731.2 Cucumis melo HOM05D003772 ORTHO05D004509 1.5e-38 163.3 169 53.8
Manes.13G145890 Manihot esculenta HOM05D003772 ORTHO05D004509 2.6e-38 162.5 146 60.3
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 2.6e-38 162.5 147 59.2
Phvul.011G119000 Phaseolus vulgaris HOM05D003772 ORTHO05D004509 2.6e-38 162.5 152 60.5
MD09G1246800 Malus domestica HOM05D003772 ORTHO05D004509 3.4e-38 162.2 158 57.6
Manes.13G145811 Manihot esculenta HOM05D003772 ORTHO05D004509 4.4e-38 161.8 146 60.3
Manes.13G145815 Manihot esculenta HOM05D003772 ORTHO05D004509 4.4e-38 161.8 146 60.3
Manes.13G146061 Manihot esculenta HOM05D003772 ORTHO05D004509 4.4e-38 161.8 146 60.3
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 5.8e-38 161.4 158 56.3
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 7.5e-38 161.0 141 61.7
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 7.5e-38 161.0 141 59.6
VMungo1127G0003 Vigna mungo HOM05D003772 ORTHO05D004509 7.5e-38 161.0 154 59.1
Sed0018072 Sechium edule HOM05D003772 ORTHO05D004509 9.8e-38 160.6 171 53.8
TWI23G0933 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 1.7e-37 159.8 161 57.1
Glyma.13G296500 Glycine max HOM05D003772 ORTHO05D004509 2.2e-37 159.5 142 59.2
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 4.9e-37 158.3 139 62.6
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 4.9e-37 158.3 158 56.3
Lalb_Chr19g0135261 Lupinus albus HOM05D003772 ORTHO05D004509 6.4e-37 157.9 148 58.1
Gorai.002G018300 Gossypium raimondii HOM05D003772 ORTHO05D004509 8.3e-37 157.5 145 58.6
MD17G1239700 Malus domestica HOM05D003772 ORTHO05D004509 1.9e-36 156.4 142 59.2
Nn1g06533 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.9e-36 156.4 151 53.0
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 2.4e-36 156.0 144 58.3
TPR.G28019 Trifolium pratense HOM05D003772 ORTHO05D004509 2.4e-36 156.0 140 58.6
Glyma.12G204900 Glycine max HOM05D003772 ORTHO05D004509 4.1e-36 155.2 160 55.0
SHI10396 Sapria himalayana HOM05D003772 ORTHO05D004509 5.4e-36 154.8 149 58.4
CSS0030564 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 9.2e-36 154.1 136 59.6
Hma1.2p1_0002F.1_g001920 Hydrangea macrophylla HOM05D003772 ORTHO05D004509 1.6e-35 153.3 135 59.3
Lj8P111T15 Lonicera japonica HOM05D003772 ORTHO05D004509 1.6e-35 153.3 136 62.5
Prupe.3G132300 Prunus persica HOM05D003772 ORTHO05D004509 1.6e-35 153.3 139 61.2
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 2.1e-35 152.9 155 54.8
HanXRQChr05g0130551 Helianthus annuus HOM05D003772 ORTHO05D004509 3.5e-35 152.1 146 56.8
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 3.5e-35 152.1 133 60.9
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 4.6e-35 151.8 154 54.5
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 6.0e-35 151.4 149 53.0
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 6.0e-35 151.4 158 53.2
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 7.8e-35 151.0 164 51.8
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 1.3e-34 150.2 138 55.8
Dinv26410 Davidia involucrata HOM05D000001 ORTHO05D004509 1.7e-34 149.8 151 54.3
Migut.F01269 Erythranthe guttata HOM05D003772 ORTHO05D004509 1.7e-34 149.8 143 56.6
MSTRG.14329 Avicennia marina HOM05D003772 ORTHO05D004509 3.0e-34 149.1 148 55.4
MSTRG.14330 Avicennia marina HOM05D003772 ORTHO05D004509 3.0e-34 149.1 148 55.4
VMungo1080G0856 Vigna mungo HOM05D003772 ORTHO05D004509 3.0e-34 149.1 158 52.5
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 3.9e-34 148.7 146 53.4
Lsat_1_v5_gn_4_66640 Lactuca sativa HOM05D003772 ORTHO05D004509 5.1e-34 148.3 155 53.5
unitig_62.g23166 Utricularia gibba HOM05D003772 ORTHO05D004509 5.1e-34 148.3 137 58.4
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 6.6e-34 147.9 159 52.8
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 1.1e-33 147.1 130 59.2
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 5.6e-33 144.8 133 57.9
SGA_v2.0_scaffold322G48628 Striga asiatica HOM05D003772 ORTHO05D004509 5.6e-33 144.8 143 54.5
DCAR_021247 Daucus carota HOM05D003772 ORTHO05D004509 1.2e-32 143.7 154 52.6
DCAR_013015 Daucus carota HOM05D003772 ORTHO05D004509 2.8e-32 142.5 141 54.6
SGA_v2.0_scaffold109G31121 Striga asiatica HOM05D003772 ORTHO05D004509 2.8e-32 142.5 139 56.1
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 3.6e-32 142.1 141 56.0
PSO541G0621 Papaver somniferum HOM05D003772 ORTHO05D004509 1.4e-31 140.2 135 55.6
Sopen07g027910 Solanum pennellii HOM05D003772 ORTHO05D004509 1.8e-31 139.8 135 56.3
HanXRQChr05g0143311 Helianthus annuus HOM05D003772 ORTHO05D004509 2.3e-31 139.4 155 49.7
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 4.0e-31 138.7 129 56.6
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 8.9e-31 137.5 147 52.4
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 1.2e-30 137.1 130 55.4
CSS0009217 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.0e-30 136.3 126 58.7
ATR0824G095 Amborella trichopoda HOM05D003772 ORTHO05D004509 4.4e-30 135.2 140 53.6
Oeu007126.1 Olea europaea HOM05D003772 ORTHO05D004509 9.9e-30 134.0 134 53.0
Sabra13G0108200 Salix brachista HOM05D003772 ORTHO05D004509 2.2e-29 132.9 122 61.5
EL10Ac9g20774 Beta vulgaris HOM05D003772 ORTHO05D004509 4.9e-29 131.7 153 48.4
MBI06_g33538_MAGBIO Magnolia biondii HOM05D003772 ORTHO05D004509 4.9e-29 131.7 144 50.0
AUR62042887 Chenopodium quinoa HOM05D003772 ORTHO05D004509 6.4e-29 131.3 146 50.0
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 4.1e-28 128.6 123 57.7
Eucgr.A01826 Eucalyptus grandis HOM05D003772 ORTHO05D004509 1.0e-26 124.0 157 49.0
Os12g0295600 Oryza sativa ssp. japonica HOM05D003772 ORTHO05D004509 1.3e-26 123.6 137 52.6
Lalb_Chr22g0356581 Lupinus albus HOM05D003772 ORTHO05D004509 3.0e-26 122.5 139 49.6
Zm00001eb163400 Zea mays HOM05D003772 ORTHO05D004509 3.9e-26 122.1 145 51.7
Oeu017493.1 Olea europaea HOM05D003772 ORTHO05D004509 1.1e-25 120.6 152 48.0
Nitab4.5_0011784g0020 Nicotiana tabacum HOM05D003772 ORTHO05D004509 1.5e-25 120.2 119 53.8
Lsat_1_v5_gn_8_135800 Lactuca sativa HOM05D003772 ORTHO05D004509 1.9e-25 119.8 137 55.5
Eucgr.A01824 Eucalyptus grandis HOM05D003772 ORTHO05D004509 1.6e-24 116.7 124 54.8
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 8.1e-24 114.4 113 56.6
CiPaw.03G178000 Carya illinoinensis HOM05D003772 ORTHO05D004509 3.1e-23 112.5 164 45.7
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 4.0e-23 112.1 136 51.5
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 5.2e-23 111.7 99 60.6
HanXRQChr17g0555101 Helianthus annuus HOM05D003772 ORTHO05D004509 3.4e-22 109.0 150 44.7
Eucgr.K01033 Eucalyptus grandis HOM05D003772 ORTHO05D004509 5.8e-22 108.2 133 49.6
Ah.11g049030 Amaranthus hybridus HOM05D003772 ORTHO05D004509 9.9e-22 107.5 118 51.7
Nn2g11445 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.3e-21 107.1 139 46.0
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 1.3e-21 107.1 90 63.3
QL08p038995 Quercus lobata HOM05D003772 ORTHO05D004509 3.8e-21 105.5 89 61.8
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 4.9e-21 105.1 90 62.2
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.7e-19 99.4 88 61.4
PGR142G3565 Punica granatum HOM05D003772 ORTHO05D004509 3.0e-18 95.9 128 48.4
Rhsim13G0122200 Rhododendron simsii HOM05D003772 ORTHO05D004509 8.7e-18 94.4 92 56.5
Ah.14g082650 Amaranthus hybridus HOM05D003772 ORTHO05D004509 1.5e-17 93.6 119 47.1
CDE09G0587 Ceratophyllum demersum HOM05D003772 ORTHO05D004509 4.3e-17 92.0 129 46.5
DCAR_019180 Daucus carota HOM05D003772 ORTHO05D004509 3.6e-16 89.0 115 43.5
Sopen10g004170 Solanum pennellii HOM05D000002 ORTHO05D000001 5.8e-14 81.6 122 42.6
vmacro00494 Vaccinium macrocarpon HOM05D003772 ORTHO05D004509 4.2e-12 75.5 124 44.4
unitig_52.g17351 Utricularia gibba HOM05D003772 ORTHO05D004509 2.7e-11 72.8 75 53.3
SalBow8G1020 Salvia bowleyana HOM05D003772 ORTHO05D004509 1.0e-10 70.9 69 53.6
Nn4g24929 Nelumbo nucifera HOM05D003772 ORTHO05D004509 3.3e-09 65.9 101 42.6
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 2.4e-07 59.7 76 43.4
Aqoxy4G00788 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 3.1e-07 59.3 137 29.2
Nn2g13184 Nelumbo nucifera HOM05D003772 ORTHO05D004509 6.9e-07 58.2 56 55.4
Zm00001eb090900 Zea mays HOM05D003772 ORTHO05D004509 1.5e-06 57.0 68 48.5
CsaV3_6G012890 Cucumis sativus L. HOM05D003772 ORTHO05D004509 2.0e-06 56.6 112 39.3
ECA247G3718 Erigeron canadensis HOM05D000048 ORTHO05D000207 2.6e-06 56.2 84 39.3
Rhsim06G0141600 Rhododendron simsii HOM05D003772 ORTHO05D004509 2.6e-06 56.2 51 52.9
TWI14G0631 Tripterygium wilfordii HOM05D008378 ORTHO05D010346 2.6e-06 56.2 86 39.5
DCAR_021586 Daucus carota HOM05D003772 ORTHO05D004509 3.4e-06 55.8 72 45.8
SalBow6G1615 Salvia bowleyana HOM05D008378 ORTHO05D010346 3.4e-06 55.8 91 40.7
AUR62008138 Chenopodium quinoa HOM05D008378 ORTHO05D010346 4.5e-06 55.5 96 32.3
AUR62028720 Chenopodium quinoa HOM05D008378 ORTHO05D010346 5.8e-06 55.1 96 32.3
TAR629G1107 Trochodendron aralioides HOM05D003772 ORTHO05D004509 5.8e-06 55.1 132 33.3
Dinv38528 Davidia involucrata HOM05D008378 ORTHO05D010346 7.6e-06 54.7 128 29.7


User provided reference genes

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