Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 5.6e-206 720.7 363 100.0
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 2.3e-167 592.4 362 83.7
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 4.4e-166 588.2 360 84.2
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 4.8e-165 584.7 360 84.7
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 2.8e-157 558.9 364 81.0
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 3.7e-157 558.5 361 81.2
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 7.0e-156 554.3 333 85.3
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 1.3e-154 550.1 360 79.7
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 1.2e-152 543.5 361 79.2
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 3.6e-152 542.0 361 78.9
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 1.6e-147 526.6 360 76.4
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 5.0e-130 468.4 362 74.9
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 1.5e-129 466.8 363 74.1
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 1.2e-126 457.2 365 73.7
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 3.2e-124 449.1 367 70.8
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 5.0e-122 441.8 361 72.0
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 9.9e-118 427.6 361 62.6
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 6.2e-88 328.6 366 57.9
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 4.7e-59 232.6 156 77.6
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 6.7e-58 228.8 163 71.8
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 9.7e-57 224.9 156 75.0
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 2.4e-55 220.3 411 39.4
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 5.5e-52 209.1 431 37.4
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 9.4e-52 208.4 430 38.1
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 1.6e-51 207.6 416 38.2
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 6.1e-51 205.7 407 38.8
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 1.8e-50 204.1 417 39.8
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 3.0e-50 203.4 411 38.4
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 3.9e-50 203.0 419 37.9
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 5.2e-50 202.6 416 38.7
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 2.0e-49 200.7 416 38.5
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 5.7e-49 199.1 414 39.4
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 7.4e-49 198.7 452 37.4
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 7.4e-49 198.7 398 39.2
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 2.8e-48 196.8 430 37.4
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 8.2e-48 195.3 441 38.3
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 8.2e-48 195.3 413 38.5
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 1.4e-47 194.5 423 37.6
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 3.1e-47 193.4 330 42.1
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 4.1e-47 193.0 407 37.8
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 7.0e-47 192.2 336 41.1
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 1.6e-46 191.0 413 38.3
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 2.0e-46 190.7 309 44.0
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 2.6e-46 190.3 331 40.8
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 4.5e-46 189.5 437 36.2
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 5.9e-46 189.1 414 36.7
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 1.0e-45 188.3 307 44.3
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 1.7e-45 187.6 361 39.3
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 2.2e-45 187.2 430 36.0
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 5.0e-45 186.0 436 37.2
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 5.0e-45 186.0 437 36.2
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 1.9e-44 184.1 365 40.3
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 1.9e-44 184.1 419 37.2
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 2.5e-44 183.7 415 36.6
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 4.2e-44 183.0 434 34.8
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 5.5e-44 182.6 414 37.7
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 7.2e-44 182.2 354 40.4
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 7.2e-44 182.2 424 36.8
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 1.6e-43 181.0 404 35.1
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 2.1e-43 180.6 416 37.3
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 1.0e-42 178.3 332 40.7
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 2.6e-41 173.7 321 40.2
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 7.5e-41 172.2 337 40.4
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 9.7e-41 171.8 333 39.0
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 3.7e-40 169.9 326 38.7
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 4.8e-40 169.5 349 41.3
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 6.3e-40 169.1 415 34.7
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 8.3e-40 168.7 466 35.6
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 1.1e-39 168.3 369 38.2
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 1.1e-39 168.3 364 37.1
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 1.4e-39 167.9 335 40.6
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 1.8e-39 167.5 399 36.8
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 1.8e-39 167.5 303 40.9
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 2.4e-39 167.2 423 34.8
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 2.4e-39 167.2 335 40.3
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 5.3e-39 166.0 360 35.6
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 2.7e-38 163.7 311 38.6
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 2.7e-38 163.7 333 38.4
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 3.5e-38 163.3 311 38.6
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 7.7e-38 162.2 329 38.9
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 1.0e-37 161.8 312 41.3
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 2.2e-37 160.6 370 36.8
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 5.0e-37 159.5 347 38.3
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 6.5e-37 159.1 393 34.6
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 6.5e-37 159.1 353 37.1
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 6.5e-37 159.1 362 35.9
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 1.1e-36 158.3 354 37.9
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 1.5e-36 157.9 117 71.8
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 1.5e-36 157.9 117 71.8
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 3.2e-36 156.8 449 33.0
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 5.5e-36 156.0 336 35.1
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 5.5e-36 156.0 337 38.3
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 2.1e-35 154.1 338 39.6
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 1.4e-34 151.4 262 41.6
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 1.4e-34 151.4 449 32.1
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 3.0e-34 150.2 434 34.8
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 3.0e-34 150.2 393 35.6
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 6.8e-34 149.1 309 37.2
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 1.2e-33 148.3 303 38.9
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 1.5e-33 147.9 400 33.5
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 2.6e-33 147.1 436 32.1
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 2.6e-33 147.1 454 33.0
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 5.7e-33 146.0 319 36.4
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 8.3e-32 142.1 312 37.5
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 1.4e-31 141.4 329 35.3
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 7.0e-31 139.0 264 40.2
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 9.1e-31 138.7 271 36.5
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 1.2e-30 138.3 224 45.1
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 1.6e-30 137.9 330 34.2
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 3.5e-30 136.7 288 37.8
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 5.0e-29 132.9 273 38.5
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 5.0e-29 132.9 446 30.7
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 4.2e-28 129.8 237 41.8
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 1.6e-27 127.9 328 32.6
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 1.8e-26 124.4 340 33.8
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 1.8e-26 124.4 326 33.1
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 4.0e-26 123.2 208 42.8
BolC9t58511H Brassica oleracea HOM05D005141 ORTHO05D006250 4.0e-26 123.2 86 74.4
CARHR240540 Cardamine hirsuta HOM05D005141 ORTHO05D006250 4.0e-26 123.2 78 79.5
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 8.9e-26 122.1 306 35.0
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 5.7e-25 119.4 233 38.6
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 2.4e-23 114.0 301 34.9
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 1.2e-22 111.7 322 30.7
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 4.5e-22 109.8 379 31.1
CARHR240550 Cardamine hirsuta HOM05D005141 ORTHO05D006250 7.8e-22 109.0 60 88.3
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 2.9e-21 107.1 267 32.2
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 2.1e-19 100.9 359 30.4
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 6.1e-19 99.4 231 38.5
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 1.7e-16 91.3 128 45.3
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 4.9e-16 89.7 119 47.9
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 1.1e-15 88.6 137 40.9
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 1.6e-14 84.7 129 45.0
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 1.6e-14 84.7 131 45.0
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 2.0e-14 84.3 132 40.9
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 1.3e-13 81.6 147 38.1
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 3.3e-12 77.0 144 38.9
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 2.8e-11 73.9 68 57.4
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 1.2e-09 68.6 44 77.3
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 1.5e-09 68.2 235 29.8
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 4.4e-09 66.6 167 32.9


User provided reference genes

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