Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s0784 Capsella rubella HOM05D006214 ORTHO05D007723 4.2e-98 361.3 176 100.0
AL7G19050 Arabidopsis lyrata HOM05D006214 ORTHO05D007723 4.5e-92 341.3 176 94.3
AT4G32690 Arabidopsis thaliana HOM05D006214 ORTHO05D007723 1.3e-91 339.7 176 93.8
CARHR240670 Cardamine hirsuta HOM05D006214 ORTHO05D007723 5.0e-91 337.8 176 94.3
Thhalv10026389m.g Eutrema salsugineum HOM05D006214 ORTHO05D007723 2.2e-83 312.4 176 87.5
Aa31LG2G16930 Aethionema arabicum HOM05D006214 ORTHO05D007723 4.2e-82 308.1 176 85.8
Sp7g30450 Schrenkiella parvula HOM05D006214 ORTHO05D007723 1.2e-81 306.6 176 85.8
C01p06220 Brassica napus HOM05D003889 ORTHO05D004407 5.2e-80 301.2 176 84.1
BolC1t00620H Brassica oleracea HOM05D006214 ORTHO05D007723 4.4e-79 298.1 176 83.5
BcaC09g52063 Brassica carinata HOM05D003889 ORTHO05D004407 9.7e-79 297.0 176 84.1
THA.LOC104803814 Tarenaya hassleriana HOM05D006214 ORTHO05D007723 1.7e-78 296.2 176 82.4
A01p05650 Brassica napus HOM05D003889 ORTHO05D004407 4.5e-76 288.1 155 87.7
BraA01t00535Z Brassica rapa HOM05D003889 ORTHO05D004407 1.0e-75 287.0 153 88.9
TWI34G1412 Tripterygium wilfordii HOM05D006214 ORTHO05D007723 1.7e-75 286.2 173 79.8
Ciclev10009715m.g Citrus clementina HOM05D006214 ORTHO05D007723 2.2e-75 285.8 176 80.1
Thecc.09G038200 Theobroma cacao HOM05D006214 ORTHO05D007723 3.8e-75 285.0 173 79.2
COL.COLO4_18710 Corchorus olitorius HOM05D006214 ORTHO05D007723 6.5e-75 284.3 176 78.4
PGSC0003DMG400014492 Solanum tuberosum HOM05D006214 ORTHO05D007723 1.9e-74 282.7 176 79.5
Nitab4.5_0000250g0190 Nicotiana tabacum HOM05D006214 ORTHO05D007723 3.2e-74 282.0 173 80.3
Cpa.g.sc205.8 Carica papaya HOM05D006214 ORTHO05D007723 4.2e-74 281.6 176 78.4
Solyc08g068070.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 4.2e-74 281.6 176 79.0
Nitab4.5_0002393g0090 Nicotiana tabacum HOM05D006214 ORTHO05D007723 7.2e-74 280.8 173 80.3
Oeu011261.1 Olea europaea HOM05D006214 ORTHO05D007723 4.7e-73 278.1 173 77.5
Manes.16G067000 Manihot esculenta HOM05D006214 ORTHO05D007723 6.1e-73 277.7 172 78.5
Sopen08g021960 Solanum pennellii HOM05D006214 ORTHO05D007723 6.1e-73 277.7 176 78.4
Eucgr.C02883 Eucalyptus grandis HOM05D006214 ORTHO05D007723 8.0e-73 277.3 173 78.6
Manes.03G064300 Manihot esculenta HOM05D006214 ORTHO05D007723 1.0e-72 276.9 172 78.5
CSS0015630 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.4e-72 276.6 172 79.1
CSS0049547 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.4e-72 276.6 172 79.1
Gorai.013G218300 Gossypium raimondii HOM05D006214 ORTHO05D007723 1.8e-72 276.2 177 77.4
Lsat_1_v5_gn_6_11341 Lactuca sativa HOM05D006214 ORTHO05D007723 2.3e-72 275.8 176 77.3
Potri.006G244300 Populus trichocarpa HOM05D006214 ORTHO05D007723 2.3e-72 275.8 171 78.9
Dinv30243 Davidia involucrata HOM05D006214 ORTHO05D007723 5.2e-72 274.6 173 76.3
Duzib150G0825 Durio zibethinus HOM05D006214 ORTHO05D007723 6.8e-72 274.2 173 77.5
AUR62032401 Chenopodium quinoa HOM05D006214 ORTHO05D007723 8.8e-72 273.9 176 75.6
PGR044G2495 Punica granatum HOM05D006214 ORTHO05D007723 8.8e-72 273.9 171 77.8
Gohir.D13G192400 Gossypium hirsutum HOM05D006214 ORTHO05D007723 1.5e-71 273.1 177 76.8
Oeu014655.1 Olea europaea HOM05D006214 ORTHO05D007723 2.0e-71 272.7 173 77.5
Sc06g0000690 Simmondsia chinensis HOM05D006214 ORTHO05D007723 3.4e-71 271.9 176 74.4
Hund25645 Selenicereus undatus HOM05D006214 ORTHO05D007723 4.4e-71 271.6 176 76.1
HanXRQChr07g0192221 Helianthus annuus HOM05D006214 ORTHO05D007723 7.5e-71 270.8 176 74.4
Nn8g39214 Nelumbo nucifera HOM05D006214 ORTHO05D007723 7.5e-71 270.8 173 76.3
QL12p026136 Quercus lobata HOM05D006214 ORTHO05D007723 7.5e-71 270.8 161 79.5
GSVIVG01035713001 Vitis vinifera HOM05D006214 ORTHO05D007723 7.5e-71 270.8 173 76.9
Aqoxy7G01701 Aquilegia oxysepala HOM05D006214 ORTHO05D007723 9.8e-71 270.4 172 78.5
Hma1.2p1_0003F.1_g003500 Hydrangea macrophylla HOM05D006214 ORTHO05D007723 1.3e-70 270.0 173 75.7
CiPaw.07G208400 Carya illinoinensis HOM05D006214 ORTHO05D007723 1.7e-70 269.6 161 79.5
Migut.A00249 Erythranthe guttata HOM05D006214 ORTHO05D007723 2.2e-70 269.2 173 76.3
Actinidia31216 Actinidia chinensis HOM05D006214 ORTHO05D007723 8.3e-70 267.3 173 75.7
Medtr1g008700 Medicago truncatula HOM05D006214 ORTHO05D007723 1.1e-69 266.9 172 76.7
Sed0020806 Sechium edule HOM05D006214 ORTHO05D007723 1.1e-69 266.9 173 74.0
CsaV3_2G031100 Cucumis sativus L. HOM05D006214 ORTHO05D007723 3.1e-69 265.4 161 78.3
PSO782G3114 Papaver somniferum HOM05D006214 ORTHO05D007723 3.1e-69 265.4 172 75.6
DCAR_001036 Daucus carota HOM05D006214 ORTHO05D007723 4.1e-69 265.0 173 76.3
Cc08_g08530 Coffea canephora HOM05D006214 ORTHO05D007723 5.4e-69 264.6 167 78.4
PSO063G0005 Papaver somniferum HOM05D006214 ORTHO05D007723 5.4e-69 264.6 174 76.4
MELO3C011160.2 Cucumis melo HOM05D006214 ORTHO05D007723 1.2e-68 263.5 161 77.0
Lalb_Chr22g0361001 Lupinus albus HOM05D006214 ORTHO05D007723 3.5e-68 261.9 155 79.4
Prupe.1G454300 Prunus persica HOM05D006214 ORTHO05D007723 4.5e-68 261.5 175 74.9
CiPaw.08G022500 Carya illinoinensis HOM05D006214 ORTHO05D007723 5.9e-68 261.2 161 75.8
TPR.G12079 Trifolium pratense HOM05D006214 ORTHO05D007723 1.0e-67 260.4 171 75.4
Ca_12821_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.3e-67 260.0 171 74.3
Ca_12822_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.3e-67 260.0 171 74.3
Rhsim02G0184100 Rhododendron simsii HOM05D006214 ORTHO05D007723 1.3e-67 260.0 170 74.1
TAR624G0931 Trochodendron aralioides HOM05D006214 ORTHO05D007723 1.7e-67 259.6 174 74.7
Actinidia13304 Actinidia chinensis HOM05D006214 ORTHO05D007723 2.3e-67 259.2 153 80.4
RcHm_v2.0_Chr6g0305591 Rosa chinensis HOM05D006214 ORTHO05D007723 2.3e-67 259.2 159 78.6
Peaxi162Scf00105g00059 Petunia axillaris HOM05D006214 ORTHO05D007723 3.8e-67 258.5 174 74.1
CANSAT25G2048 Cannabis sativa HOM05D006214 ORTHO05D007723 5.0e-67 258.1 157 79.0
Psat6g005800 Pisum sativum HOM05D006214 ORTHO05D007723 8.6e-67 257.3 171 74.3
SGA_v2.0_scaffold27G11530 Striga asiatica HOM05D006214 ORTHO05D007723 2.5e-66 255.8 181 71.8
FAN15G3028 Fragaria x ananassa HOM05D006214 ORTHO05D007723 9.5e-66 253.8 151 78.8
Haze_21823 Corylus avellana HOM05D006214 ORTHO05D007723 1.2e-65 253.4 161 75.8
Lj1g0018426 Lotus japonicus HOM05D006214 ORTHO05D007723 1.2e-65 253.4 169 74.6
Duzib168G0494 Durio zibethinus HOM05D006214 ORTHO05D007723 1.6e-65 253.1 172 72.1
VMungo0647G2273 Vigna mungo HOM05D006214 ORTHO05D007723 3.6e-65 251.9 171 73.1
Phvul.001G060001 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 4.7e-65 251.5 171 73.1
arahy.Tifrunner.gnm1.ann1.72Y1Y4 Arachis hypogaea HOM05D006214 ORTHO05D007723 6.1e-65 251.1 171 73.1
ATR1120G189 Amborella trichopoda HOM05D006214 ORTHO05D007723 8.0e-65 250.8 171 72.5
SEGI_02532 Sequoiadendron giganteum HOM05D006214 ORTHO05D007723 8.0e-65 250.8 162 72.8
Solyc08g068090.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 8.0e-65 250.8 167 74.3
Cfa013332 Carpinus fangiana HOM05D006214 ORTHO05D007723 1.4e-64 250.0 171 71.9
Psat0s1478g0160 Pisum sativum HOM05D006214 ORTHO05D007723 4.0e-64 248.4 157 75.8
Sopen08g021970 Solanum pennellii HOM05D006214 ORTHO05D007723 4.0e-64 248.4 155 78.1
Medtr3g109420 Medicago truncatula HOM05D006214 ORTHO05D007723 6.8e-64 247.7 157 76.4
Lj8A606G25 Lonicera japonica HOM05D006214 ORTHO05D007723 8.8e-64 247.3 188 67.0
Lj1g0018927 Lotus japonicus HOM05D006214 ORTHO05D007723 3.4e-63 245.4 168 72.6
arahy.Tifrunner.gnm1.ann1.8TR5WT Arachis hypogaea HOM05D006214 ORTHO05D007723 5.7e-63 244.6 171 70.8
Lalb_Chr08g0243361 Lupinus albus HOM05D006214 ORTHO05D007723 1.3e-62 243.4 173 70.5
Glyma.14G140400 Glycine max HOM05D006214 ORTHO05D007723 2.8e-62 242.3 171 70.2
VMungo1309G2769 Vigna mungo HOM05D006214 ORTHO05D007723 2.8e-62 242.3 171 69.6
Os06g0591600 Oryza sativa ssp. japonica HOM05D006214 ORTHO05D007723 2.4e-61 239.2 176 67.0
FAN20G2536 Fragaria x ananassa HOM05D006214 ORTHO05D007723 3.1e-61 238.8 151 75.5
MD15G1099500 Malus domestica HOM05D006214 ORTHO05D007723 4.1e-61 238.4 153 74.5
Eucgr.L03669 Eucalyptus grandis HOM05D006214 ORTHO05D007723 5.4e-61 238.0 173 70.5
FvH4_2g36290 Fragaria vesca HOM05D006214 ORTHO05D007723 7.0e-61 237.7 151 74.8
Zm00001eb386050 Zea mays HOM05D006214 ORTHO05D007723 7.0e-61 237.7 170 70.0
Atru.chr7.2182 Acer truncatum HOM05D006214 ORTHO05D007723 2.0e-60 236.1 139 79.1
Atru.chr7.2299 Acer truncatum HOM05D006214 ORTHO05D007723 2.0e-60 236.1 139 79.1
Phvul.009G104900 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 2.0e-60 236.1 174 65.5
TPR.G1342 Trifolium pratense HOM05D006214 ORTHO05D007723 2.0e-60 236.1 159 73.6
FAN27G2409 Fragaria x ananassa HOM05D006214 ORTHO05D007723 5.9e-60 234.6 151 74.2
Glyma.04G079200 Glycine max HOM05D006214 ORTHO05D007723 7.8e-60 234.2 171 67.8
Ah.12g061040 Amaranthus hybridus HOM05D006214 ORTHO05D007723 1.0e-59 233.8 175 68.6
Ca_15627_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.0e-59 233.8 167 68.9
SMO164G0258 Selaginella moellendorffii HOM05D006214 ORTHO05D007723 8.6e-59 230.7 150 72.0
Pp3c1_3380 Physcomitrium patens HOM05D006214 ORTHO05D007723 2.8e-57 225.7 151 70.9
HPP92_005176 Vanilla planifolia HOM05D006214 ORTHO05D007723 2.8e-57 225.7 186 61.8
AagrBONN_evm.TU.Sc2ySwM_368.1910 Anthoceros agrestis HOM05D006214 ORTHO05D007723 1.3e-54 216.9 158 67.1
Pp3c6_250 Physcomitrium patens HOM05D006214 ORTHO05D007723 1.1e-53 213.8 152 65.1
Sabra06G0191200 Salix brachista HOM05D006214 ORTHO05D007723 1.8e-53 213.0 172 66.9
Gohir.D05G051050 Gossypium hirsutum HOM05D006214 ORTHO05D007723 3.5e-52 208.8 178 60.1
arahy.Tifrunner.gnm1.ann1.LJ0T63 Arachis hypogaea HOM05D006214 ORTHO05D007723 5.9e-52 208.0 142 73.2
CAN.G886.7 Capsicum annuum HOM05D006214 ORTHO05D007723 2.3e-51 206.1 134 74.6
AUR62024819 Chenopodium quinoa HOM05D006214 ORTHO05D007723 3.9e-51 205.3 131 74.8
ECA233G3302 Erigeron canadensis HOM05D006214 ORTHO05D007723 7.3e-50 201.1 301 41.9
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 1.1e-48 197.2 141 68.1
Gorai.009G052700 Gossypium raimondii HOM05D006214 ORTHO05D007723 1.3e-46 190.3 111 77.5
EL10Ac2g02522 Beta vulgaris HOM05D006214 ORTHO05D007723 3.6e-41 172.2 179 55.9
MBI04_g08934_MAGBIO Magnolia biondii HOM05D006214 ORTHO05D003073 3.5e-36 155.6 311 36.3
TAR636G1550 Trochodendron aralioides HOM05D006214 ORTHO05D007723 4.0e-32 142.1 237 40.5
ClCG08G012410 Citrullus lanatus HOM05D006214 ORTHO05D007723 5.2e-32 141.7 202 43.6
CSS0020447 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 2.3e-27 126.3 84 73.8
Lsat_1_v5_gn_6_11301 Lactuca sativa HOM05D006214 ORTHO05D007723 4.7e-25 118.6 67 82.1
Potri.018G036200 Populus trichocarpa HOM05D006214 ORTHO05D007723 1.1e-24 117.5 82 67.1
C01p47490 Brassica napus HOM05D006214 ORTHO05D007723 4.0e-24 115.5 79 67.1
CSS0007395 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 9.9e-23 110.9 67 73.1
BolC1t04720H Brassica oleracea HOM05D006214 ORTHO05D007723 2.8e-17 92.8 44 88.6
Peaxi162Scf00105g00513 Petunia axillaris HOM05D006214 ORTHO05D007723 9.6e-10 67.8 88 43.2
HanXRQChr07g0195131 Helianthus annuus HOM05D006214 ORTHO05D007723 2.8e-09 66.2 45 73.3
Glyma.06G080700 Glycine max HOM05D006214 ORTHO05D007723 4.0e-08 62.4 72 43.1
arahy.Tifrunner.gnm1.ann1.YGZX15 Arachis hypogaea HOM05D000254 ORTHO05D000165 1.5e-07 60.5 119 32.8
SMO164G0257 Selaginella moellendorffii HOM05D014720 ORTHO05D377594 1.7e-06 57.0 47 63.8


User provided reference genes

Program Settings