Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 1.9e-305 1051.6 494 100.0
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 4.9e-285 983.8 494 92.7
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 9.5e-281 969.5 495 91.3
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 1.0e-279 966.1 494 92.1
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 4.6e-275 950.7 495 89.3
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 2.3e-274 948.3 501 88.4
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 3.7e-269 931.0 499 86.8
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 1.7e-266 922.2 499 86.2
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 5.0e-266 920.6 500 86.2
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 5.0e-266 920.6 500 86.2
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 8.1e-256 886.7 501 81.6
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 2.1e-216 755.7 445 77.3
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 3.7e-216 755.0 489 72.0
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 6.9e-215 750.7 448 74.8
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 6.9e-215 750.7 472 72.7
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.0e-214 749.2 448 74.6
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 6.5e-213 744.2 441 76.0
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 1.1e-212 743.4 450 73.1
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.4e-212 743.0 458 73.8
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.4e-212 743.0 458 73.8
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 1.4e-212 743.0 462 72.9
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 1.9e-212 742.7 439 78.6
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 5.5e-212 741.1 484 69.8
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 6.1e-211 737.6 468 69.9
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 7.9e-211 737.3 457 72.0
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 1.8e-210 736.1 463 71.3
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 2.3e-210 735.7 467 71.9
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 6.7e-210 734.2 452 72.8
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 6.7e-210 734.2 471 70.7
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 8.7e-210 733.8 486 69.5
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 1.1e-209 733.4 461 71.8
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 1.9e-209 732.6 464 72.8
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 2.5e-209 732.3 465 72.5
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 4.3e-209 731.5 467 70.9
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.3e-208 729.9 468 70.3
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 1.6e-208 729.6 466 70.2
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 1.6e-208 729.6 490 68.8
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 2.2e-208 729.2 474 70.3
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 2.2e-208 729.2 458 72.1
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 4.8e-208 728.0 470 70.9
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 1.1e-207 726.9 438 73.7
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.8e-207 726.1 495 67.7
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 1.8e-207 726.1 439 73.1
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 2.4e-207 725.7 473 69.1
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 4.1e-207 724.9 487 69.0
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 5.3e-207 724.5 444 72.5
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 5.3e-207 724.5 457 71.6
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 9.1e-207 723.8 461 71.1
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 9.1e-207 723.8 450 71.8
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 1.2e-206 723.4 434 73.3
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 1.5e-206 723.0 474 69.6
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 2.0e-206 722.6 487 67.6
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.0e-205 720.3 448 71.2
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 1.0e-205 720.3 474 67.5
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 1.7e-205 719.5 479 68.3
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 2.2e-205 719.2 447 71.8
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 2.2e-205 719.2 522 65.3
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 2.2e-205 719.2 473 68.5
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.9e-205 718.8 470 69.6
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 8.5e-205 717.2 535 64.1
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 4.2e-204 714.9 447 71.6
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 2.1e-203 712.6 505 66.9
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 2.7e-203 712.2 475 68.4
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 7.9e-203 710.7 427 73.8
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 3.9e-202 708.4 484 67.1
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 8.8e-202 707.2 451 70.1
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 2.6e-201 705.7 449 69.3
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 7.4e-201 704.1 449 69.7
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 9.7e-201 703.7 494 65.2
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 1.3e-200 703.4 449 69.0
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 1.3e-200 703.4 440 69.8
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 6.3e-200 701.0 490 65.9
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 1.1e-199 700.3 486 65.0
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 1.4e-199 699.9 467 67.9
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 9.1e-199 697.2 486 64.6
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 1.2e-198 696.8 481 66.7
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 1.2e-198 696.8 467 67.7
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 2.6e-198 695.7 467 67.5
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 7.7e-198 694.1 468 68.8
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 1.7e-197 693.0 465 67.5
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 2.9e-197 692.2 499 63.3
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 4.2e-196 688.3 465 67.1
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 5.5e-196 688.0 485 65.8
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 1.2e-195 686.8 475 68.6
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 7.9e-195 684.1 480 65.8
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 1.5e-193 679.9 494 64.0
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 4.4e-193 678.3 497 63.4
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.8e-192 675.6 442 66.7
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 1.6e-190 669.8 466 65.5
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.0e-189 667.2 437 65.4
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 8.5e-189 664.1 428 68.0
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 1.6e-187 659.8 379 77.6
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 6.7e-186 654.4 454 64.3
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 2.7e-182 642.5 584 54.5
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.1e-180 637.1 486 61.5
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 1.9e-180 636.3 495 62.8
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 4.2e-180 635.2 458 65.3
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 9.4e-180 634.0 451 66.7
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 1.6e-179 633.3 381 74.0
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 3.6e-179 632.1 381 73.2
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 3.6e-179 632.1 381 73.2
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 3.6e-171 605.5 381 71.7
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 6.8e-170 601.3 367 71.7
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 7.0e-167 591.3 392 68.9
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 3.8e-165 585.5 429 62.7
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 3.0e-162 575.9 434 63.1
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.9e-160 569.3 482 58.5
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 1.4e-159 567.0 418 60.5
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 5.0e-157 558.5 464 56.7
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 3.3e-156 555.8 519 53.8
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.8e-155 552.7 326 74.8
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 4.4e-153 545.4 409 62.8
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 5.8e-153 545.0 454 54.4
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 5.0e-149 531.9 462 55.8
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 1.0e-141 507.7 465 55.5
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 3.9e-141 505.8 397 56.9
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 3.6e-131 472.6 428 52.6
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 3.1e-130 469.5 322 63.4
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 6.9e-122 441.8 271 70.5
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.8e-120 436.0 252 75.4
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 1.8e-98 364.0 456 39.9
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 4.1e-98 362.8 219 72.6
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.8e-75 287.0 185 68.1
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 7.2e-71 272.3 419 37.9
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 8.8e-69 265.4 162 72.2
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.1e-66 258.5 367 38.7
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.1e-55 221.9 168 64.3
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 1.9e-55 221.1 131 74.0
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.2e-55 219.9 147 63.3
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.7e-51 208.0 110 79.1
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 6.1e-46 189.5 149 57.0
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.2e-44 185.3 119 71.4
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 6.2e-38 162.9 186 48.4
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 5.2e-37 159.8 104 65.4
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 1.1e-34 152.1 112 63.4
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 3.1e-29 134.0 186 40.3
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.9e-19 100.9 61 68.9
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 2.8e-14 84.3 42 85.7
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 5.8e-12 76.6 61 54.1
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 5.1e-08 63.5 143 33.6
TPR.G33960 Trifolium pratense HOM05D005302 ORTHO05D006422 2.1e-06 58.2 32 78.1


User provided reference genes

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