Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s0568 Capsella rubella HOM05D006691 ORTHO05D007620 2.3e-38 161.8 83 100.0
AL7G16600 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 8.5e-33 143.3 83 86.7
Thhalv10026702m.g Eutrema salsugineum HOM05D006691 ORTHO05D007620 7.9e-31 136.7 83 85.5
CARHR242800 Cardamine hirsuta HOM05D006691 ORTHO05D007620 1.0e-30 136.3 83 81.9
BcaNung04921 Brassica carinata HOM05D006691 ORTHO05D007620 2.4e-27 125.2 83 77.1
BcaB03g11823 Brassica carinata HOM05D006691 ORTHO05D007620 7.0e-27 123.6 83 75.9
A03p63030 Brassica napus HOM05D006691 ORTHO05D007620 7.0e-27 123.6 83 75.9
BraA03t15377Z Brassica rapa HOM05D006691 ORTHO05D007620 7.0e-27 123.6 83 75.9
C07p60660 Brassica napus HOM05D006691 ORTHO05D007620 4.5e-26 120.9 83 73.5
BolC7t46496H Brassica oleracea HOM05D006691 ORTHO05D007620 4.5e-26 120.9 83 73.5
BcaNung00683 Brassica carinata HOM05D006691 ORTHO05D007620 5.9e-26 120.6 83 77.1
C01p04190 Brassica napus HOM05D006691 ORTHO05D007620 5.9e-26 120.6 83 77.1
A01p03880 Brassica napus HOM05D006691 ORTHO05D007620 7.7e-26 120.2 83 77.1
BraA01t00375Z Brassica rapa HOM05D006691 ORTHO05D007620 1.3e-25 119.4 83 75.9
BcaC01g00889 Brassica carinata HOM05D006691 ORTHO05D007620 3.8e-25 117.9 83 75.9
BraA08t33636Z Brassica rapa HOM05D006691 ORTHO05D007620 1.1e-24 116.3 83 74.7
BolC3t20851H Brassica oleracea HOM05D006691 ORTHO05D007620 1.6e-23 112.5 85 70.6
Sp7g32390 Schrenkiella parvula HOM05D006691 ORTHO05D007620 8.2e-20 100.1 62 77.4
AT2G16385 Arabidopsis thaliana HOM05D006691 ORTHO05D007620 1.1e-19 99.8 84 59.5
BolC1t00407H Brassica oleracea HOM05D006691 ORTHO05D007620 4.1e-19 97.8 87 65.5
Carub.0003s3015 Capsella rubella HOM05D006691 ORTHO05D007620 5.3e-19 97.4 85 62.4
AL3G52540 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 9.1e-19 96.7 84 58.3
C03p85630 Brassica napus HOM05D006691 ORTHO05D007620 8.0e-15 83.6 55 72.7
THA.LOC104819621 Tarenaya hassleriana HOM05D006691 ORTHO05D007620 3.0e-14 81.6 85 56.5
Dinv42040 Davidia involucrata HOM05D006691 ORTHO05D007620 6.8e-14 80.5 94 53.2
A08p16710 Brassica napus HOM05D006691 ORTHO05D007620 1.2e-13 79.7 72 59.7
Sopen01g052090 Solanum pennellii HOM05D006691 ORTHO05D007620 1.3e-12 76.3 85 50.6
Dinv23490 Davidia involucrata HOM05D006691 ORTHO05D007620 2.8e-12 75.1 94 51.1
CAN.G1544.5 Capsicum annuum HOM05D006691 ORTHO05D007620 3.7e-12 74.7 87 51.7
Cc00_g15110 Coffea canephora HOM05D006691 ORTHO05D007620 6.3e-12 73.9 98 43.9
Nitab4.5_0003234g0120 Nicotiana tabacum HOM05D006691 ORTHO05D007620 1.8e-11 72.4 91 47.3
Solyc01g109895.1 Solanum lycopersicum HOM05D006691 ORTHO05D007620 2.4e-11 72.0 86 50.0
Nitab4.5_0007454g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 3.1e-11 71.6 96 46.9
Peaxi162Scf00016g00429 Petunia axillaris HOM05D006691 ORTHO05D007620 3.1e-11 71.6 97 45.4
TWI31G1476 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 3.1e-11 71.6 90 48.9
PGSC0003DMG400030948 Solanum tuberosum HOM05D006691 ORTHO05D007620 4.1e-11 71.2 86 50.0
Potri.009G119900 Populus trichocarpa HOM05D006691 ORTHO05D007620 1.2e-10 69.7 96 45.8
TPR.G1848 Trifolium pratense HOM05D006691 ORTHO05D007620 2.0e-10 68.9 87 49.4
Lj1g0004010 Lotus japonicus HOM05D006691 ORTHO05D007620 3.5e-10 68.2 88 47.7
Actinidia00546 Actinidia chinensis HOM05D006691 ORTHO05D007620 4.5e-10 67.8 83 49.4
Nitab4.5_0013456g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 4.5e-10 67.8 92 45.7
CsaV3_2G015000 Cucumis sativus L. HOM05D006691 ORTHO05D007620 5.9e-10 67.4 93 46.2
AT4G34600 Arabidopsis thaliana HOM05D006691 ORTHO05D007620 7.7e-10 67.0 45 84.4
ClCG11G004170 Citrullus lanatus HOM05D006691 ORTHO05D007620 7.7e-10 67.0 81 49.4
Duzib132G0715 Durio zibethinus HOM05D006691 ORTHO05D007620 7.7e-10 67.0 81 46.9
Medtr8g037800 Medicago truncatula HOM05D006691 ORTHO05D007620 7.7e-10 67.0 87 47.1
MELO3C023320.2 Cucumis melo HOM05D006691 ORTHO05D007620 1.3e-09 66.2 94 45.7
COL.COLO4_25981 Corchorus olitorius HOM05D006691 ORTHO05D007620 1.7e-09 65.9 91 45.1
FvH4_2g09570 Fragaria vesca HOM05D006691 ORTHO05D007620 1.7e-09 65.9 90 45.6
FAN24G2625 Fragaria x ananassa HOM05D006691 ORTHO05D007620 1.7e-09 65.9 90 45.6
MD10G1069300 Malus domestica HOM05D006691 ORTHO05D007620 2.2e-09 65.5 88 46.6
GSVIVG01023821001 Vitis vinifera HOM05D006691 ORTHO05D007620 2.2e-09 65.5 97 43.3
CSS0036321 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 2.9e-09 65.1 88 45.5
Glyma.13G201100 Glycine max HOM05D006691 ORTHO05D007620 2.9e-09 65.1 94 45.7
Psat4g192840 Pisum sativum HOM05D006691 ORTHO05D007620 2.9e-09 65.1 84 42.9
Ciclev10030122m.g Citrus clementina HOM05D006691 ORTHO05D007620 3.8e-09 64.7 94 45.7
TAR628G0615 Trochodendron aralioides HOM05D006691 ORTHO05D007620 3.8e-09 64.7 90 40.0
QL11p045203 Quercus lobata HOM05D006691 ORTHO05D007620 6.5e-09 63.9 94 41.5
TWI79G1416 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 6.5e-09 63.9 91 44.0
Eucgr.I01291 Eucalyptus grandis HOM05D006691 ORTHO05D007620 1.1e-08 63.2 93 47.3
MD05G1061400 Malus domestica HOM05D006691 ORTHO05D007620 1.5e-08 62.8 92 44.6
Migut.B00211 Erythranthe guttata HOM05D006691 ORTHO05D007620 1.9e-08 62.4 88 45.5
SalBow6G5689 Salvia bowleyana HOM05D006691 ORTHO05D007620 1.9e-08 62.4 85 40.0
FAN27G2049 Fragaria x ananassa HOM05D006691 ORTHO05D007620 2.5e-08 62.0 90 43.3
Hma1.2p1_0066F.1_g036140 Hydrangea macrophylla HOM05D006691 ORTHO05D007620 2.5e-08 62.0 90 44.4
Thecc.02G080700 Theobroma cacao HOM05D006691 ORTHO05D007620 3.2e-08 61.6 80 45.0
Sed0023451 Sechium edule HOM05D006691 ORTHO05D007620 4.2e-08 61.2 97 42.3
Gohir.A03G196700 Gossypium hirsutum HOM05D006691 ORTHO05D007620 5.5e-08 60.8 81 44.4
Manes.11G091700 Manihot esculenta HOM05D006691 ORTHO05D007620 5.5e-08 60.8 94 40.4
Phvul.011G210100 Phaseolus vulgaris HOM05D006691 ORTHO05D007620 5.5e-08 60.8 94 42.6
Lj3g0013236 Lotus japonicus HOM05D006691 ORTHO05D007620 7.2e-08 60.5 87 44.8
CANSAT11G0932 Cannabis sativa HOM05D006691 ORTHO05D007620 9.4e-08 60.1 90 38.9
Gorai.005G245800 Gossypium raimondii HOM05D006691 ORTHO05D007620 9.4e-08 60.1 81 44.4
Duzib248G1522 Durio zibethinus HOM05D006691 ORTHO05D007620 1.2e-07 59.7 81 45.7
FAN15G0999 Fragaria x ananassa HOM05D006691 ORTHO05D007620 1.2e-07 59.7 96 41.7
Gohir.D02G217900 Gossypium hirsutum HOM05D006691 ORTHO05D007620 1.2e-07 59.7 81 44.4
FAN20G2766 Fragaria x ananassa HOM05D006691 ORTHO05D007620 1.6e-07 59.3 96 41.7
PSO675G5127 Papaver somniferum HOM05D006691 ORTHO05D007620 1.6e-07 59.3 101 38.6
Prupe.8G091200 Prunus persica HOM05D006691 ORTHO05D007620 1.6e-07 59.3 94 41.5
Rhsim05G0071400 Rhododendron simsii HOM05D006691 ORTHO05D007620 1.6e-07 59.3 87 44.8
Nitab4.5_0001413g0050 Nicotiana tabacum HOM05D006691 ORTHO05D007620 2.7e-07 58.5 93 41.9
CiPaw.06G132900 Carya illinoinensis HOM05D006691 ORTHO05D007620 3.6e-07 58.2 97 42.3
Manes.04G087299 Manihot esculenta HOM05D006691 ORTHO05D007620 6.1e-07 57.4 91 39.6
PSO591G0314 Papaver somniferum HOM05D006691 ORTHO05D007620 6.1e-07 57.4 96 37.5
arahy.Tifrunner.gnm1.ann1.43WB82 Arachis hypogaea HOM05D006691 ORTHO05D007620 8.0e-07 57.0 91 42.9
CiPaw.05G069100 Carya illinoinensis HOM05D006691 ORTHO05D007620 8.0e-07 57.0 35 68.6
Gohir.D13G030800 Gossypium hirsutum HOM05D006691 ORTHO05D007620 8.0e-07 57.0 81 40.7
Gorai.013G035000 Gossypium raimondii HOM05D006691 ORTHO05D007620 8.0e-07 57.0 81 40.7
Lsat_1_v5_gn_7_91560 Lactuca sativa HOM05D006691 ORTHO05D007620 1.0e-06 56.6 86 45.3
Lalb_Chr01g0007961 Lupinus albus HOM05D006691 ORTHO05D007620 1.0e-06 56.6 93 41.9
Aqoxy5G01556 Aquilegia oxysepala HOM05D006691 ORTHO05D007620 1.8e-06 55.8 89 37.1
PGR042G3893 Punica granatum HOM05D006691 ORTHO05D007620 1.8e-06 55.8 80 45.0
CiPaw.05G069300 Carya illinoinensis HOM05D006691 ORTHO05D007620 2.3e-06 55.5 35 68.6
CiPaw.05G069400 Carya illinoinensis HOM05D006691 ORTHO05D007620 2.3e-06 55.5 35 68.6
RcHm_v2.0_Chr6g0265861 Rosa chinensis HOM05D006691 ORTHO05D007620 3.0e-06 55.1 96 40.6
Gohir.A13G032600 Gossypium hirsutum HOM05D006691 ORTHO05D007620 4.0e-06 54.7 81 39.5
CSS0004191 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 6.8e-06 53.9 83 39.8
Glyma.12G235600 Glycine max HOM05D006691 ORTHO05D007620 6.8e-06 53.9 32 68.8
HanXRQChr04g0127791 Helianthus annuus HOM05D006691 ORTHO05D007620 6.8e-06 53.9 86 45.3


User provided reference genes

Program Settings