Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 3.4e-254 881.3 502 100.0
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 6.4e-200 701.0 511 81.4
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.0e-189 667.2 508 80.1
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 1.1e-186 657.1 523 78.2
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 5.6e-180 634.8 506 77.5
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 1.6e-179 633.3 509 78.2
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 3.4e-177 625.5 510 76.5
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 5.8e-177 624.8 530 74.9
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 1.3e-176 623.6 512 78.5
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 6.9e-154 548.1 513 68.8
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 4.7e-142 508.8 507 66.7
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 1.2e-134 484.2 500 65.4
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 2.3e-133 479.9 510 59.4
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 1.5e-132 477.2 487 66.1
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 1.4e-125 454.1 511 57.9
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 1.2e-124 451.1 511 58.9
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 5.7e-124 448.7 488 57.0
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.7e-121 439.9 505 58.6
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 3.5e-121 439.5 487 62.6
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.5e-121 439.5 505 58.8
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 4.5e-121 439.1 505 58.6
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 5.0e-120 435.6 401 68.8
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 2.5e-119 433.3 513 55.6
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 3.2e-119 433.0 517 56.1
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 4.2e-119 432.6 502 55.0
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 1.2e-118 431.0 510 58.0
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 2.1e-118 430.3 496 55.8
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 4.7e-118 429.1 502 54.8
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.0e-117 427.9 504 54.0
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 5.2e-117 425.6 497 57.9
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.2e-117 425.6 505 54.7
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.6e-116 423.3 508 53.5
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 9.8e-116 421.4 479 58.7
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.8e-115 419.9 502 55.4
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 3.7e-115 419.5 495 53.7
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 6.3e-115 418.7 502 55.2
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 1.1e-114 417.9 510 55.5
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 1.4e-114 417.5 509 54.6
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 7.0e-114 415.2 510 55.9
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 1.2e-113 414.5 505 55.2
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 5.9e-113 412.1 504 53.8
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 1.0e-112 411.4 490 54.5
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.3e-112 411.0 501 52.9
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 2.3e-112 410.2 509 56.6
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 8.6e-112 408.3 510 52.9
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.9e-111 407.1 502 54.8
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 3.3e-111 406.4 492 54.5
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 5.5e-111 405.6 481 54.1
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 4.7e-110 402.5 509 56.4
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 8.0e-110 401.7 501 54.9
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 6.8e-109 398.7 507 53.3
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 8.9e-109 398.3 488 54.3
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 1.2e-108 397.9 480 55.4
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 2.0e-108 397.1 511 52.4
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 3.4e-108 396.4 515 53.6
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 2.2e-107 393.7 492 52.4
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 1.8e-106 390.6 481 54.9
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 2.4e-106 390.2 477 50.9
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 1.0e-104 384.8 481 51.1
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 1.0e-104 384.8 501 50.9
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 5.6e-103 379.0 500 52.0
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 1.6e-102 377.5 512 49.4
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 3.1e-101 373.2 477 51.4
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 5.2e-101 372.5 506 53.0
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 5.2e-101 372.5 506 53.2
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 9.8e-100 368.2 506 52.4
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.3e-99 367.9 472 51.3
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 1.3e-99 367.9 505 48.5
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.7e-99 367.5 472 51.3
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 2.9e-99 366.7 477 48.6
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 4.9e-99 365.9 498 51.4
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 1.4e-98 364.4 437 55.6
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 1.2e-97 361.3 500 50.2
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 2.0e-97 360.5 509 48.9
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 6.0e-97 359.0 498 50.2
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 7.8e-97 358.6 552 47.6
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 7.8e-97 358.6 506 51.0
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 8.6e-96 355.1 504 48.4
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 1.5e-95 354.4 502 49.4
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 4.3e-95 352.8 464 51.3
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 7.3e-95 352.1 608 44.9
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 4.7e-94 349.4 542 49.1
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 6.2e-94 349.0 512 47.3
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 8.0e-94 348.6 510 46.7
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 8.9e-93 345.1 514 49.4
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 1.5e-92 344.4 490 48.0
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 5.8e-92 342.4 504 48.6
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 5.8e-92 342.4 501 49.1
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.7e-91 339.7 481 51.4
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 1.1e-90 338.2 472 47.0
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 3.2e-90 336.7 473 50.7
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 5.4e-90 335.9 503 46.7
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 9.2e-90 335.1 473 49.0
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 2.3e-88 330.5 502 48.0
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 5.1e-88 329.3 386 53.4
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 6.6e-88 328.9 294 71.8
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 3.3e-87 326.6 481 49.1
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.3e-87 326.6 343 59.5
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 1.6e-86 324.3 518 47.3
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 1.6e-86 324.3 505 46.9
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 2.1e-86 323.9 425 50.8
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 2.8e-86 323.6 488 47.5
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.2e-84 318.2 494 49.8
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.5e-84 317.8 505 44.2
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 3.4e-84 316.6 368 56.2
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 3.7e-83 313.2 505 46.9
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 1.2e-81 308.1 480 46.2
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 3.3e-79 300.1 500 43.4
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 9.5e-79 298.5 482 43.4
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 1.2e-78 298.1 484 46.3
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 2.1e-78 297.4 475 44.0
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.4e-77 293.9 506 43.9
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 2.6e-76 290.4 471 46.3
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 7.6e-76 288.9 543 40.7
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 2.1e-73 280.8 428 44.6
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 2.1e-73 280.8 474 45.4
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 4.3e-71 273.1 280 58.2
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 2.4e-69 267.3 583 38.4
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 4.9e-67 259.6 239 64.4
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 1.6e-65 254.6 277 57.0
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 2.1e-65 254.2 508 39.8
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 1.1e-63 248.4 507 37.9
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 6.4e-59 232.6 432 39.4
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 1.0e-56 225.3 296 49.7
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 2.3e-56 224.2 444 41.4
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 2.5e-55 220.7 512 36.7
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 9.3e-50 202.2 430 38.1
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 2.1e-41 174.5 446 33.2
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.0e-40 172.2 430 33.3
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 2.3e-40 171.0 179 66.5
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.2e-36 158.7 282 39.0
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 5.7e-31 139.8 397 31.2
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.3e-30 138.7 151 63.6
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 2.0e-28 131.3 206 51.9
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 9.4e-26 122.5 484 26.4
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.3e-22 109.8 100 56.0
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 1.2e-20 105.5 92 60.9
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 2.6e-20 104.4 277 33.2
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 8.5e-19 99.4 206 40.3
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 1.5e-18 98.6 66 72.7
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 1.0e-16 92.4 77 63.6
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 2.3e-16 91.3 196 37.2
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 3.9e-16 90.5 117 42.7
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 5.7e-15 86.7 181 34.8
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 9.7e-15 85.9 168 34.5
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 1.4e-13 82.0 202 35.1
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 5.9e-12 76.6 221 35.3
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 2.2e-11 74.7 158 36.1
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 6.5e-11 73.2 202 35.1
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 8.0e-09 66.2 270 27.8
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 1.0e-08 65.9 266 29.3
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 6.8e-08 63.2 70 50.0
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 7.5e-07 59.7 107 36.4
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 2.8e-06 57.8 412 21.4


User provided reference genes

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