Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s0317 Capsella rubella HOM05D005490 ORTHO05D006606 1.4e-248 862.8 552 100.0
AL7G13750 Arabidopsis lyrata HOM05D005490 ORTHO05D006606 2.6e-223 778.9 478 93.1
Sp7g34780 Schrenkiella parvula HOM05D005490 ORTHO05D006606 6.5e-222 774.2 480 92.5
AT4G36980 Arabidopsis thaliana HOM05D005490 ORTHO05D006606 3.2e-221 771.9 480 91.9
Thhalv10025018m.g Eutrema salsugineum HOM05D005490 ORTHO05D006606 4.8e-217 758.1 482 91.3
Aa31LG6G13990 Aethionema arabicum HOM05D005490 ORTHO05D006606 7.0e-216 754.2 495 86.3
C01p01990 Brassica napus HOM05D005490 ORTHO05D006606 4.7e-212 741.5 481 86.9
A01p01850 Brassica napus HOM05D005490 ORTHO05D006606 8.8e-211 737.3 481 87.5
BraA01t00174Z Brassica rapa HOM05D005490 ORTHO05D006606 8.8e-211 737.3 481 87.5
CARHR245520 Cardamine hirsuta HOM05D005490 ORTHO05D006606 2.8e-209 732.3 478 87.7
BolC1t00193H Brassica oleracea HOM05D005490 ORTHO05D006606 8.3e-209 730.7 492 84.8
BcaNung02520 Brassica carinata HOM05D005490 ORTHO05D006606 2.7e-199 699.1 454 87.7
THA.LOC104804216 Tarenaya hassleriana HOM05D005490 ORTHO05D006606 4.0e-195 685.3 483 82.4
CiPaw.01G018200 Carya illinoinensis HOM05D005490 ORTHO05D006606 5.8e-178 628.2 487 74.1
RcHm_v2.0_Chr2g0105671 Rosa chinensis HOM05D005490 ORTHO05D006606 2.7e-175 619.4 482 74.7
QL06p041379 Quercus lobata HOM05D005490 ORTHO05D006606 3.9e-174 615.5 519 69.6
Potri.007G044100 Populus trichocarpa HOM05D005490 ORTHO05D006606 5.1e-174 615.1 486 74.5
Manes.12G106800 Manihot esculenta HOM05D005490 ORTHO05D006606 6.6e-174 614.8 486 75.3
Ciclev10025320m.g Citrus clementina HOM05D005490 ORTHO05D006606 1.1e-173 614.0 485 74.8
DCAR_025733 Daucus carota HOM05D005490 ORTHO05D006606 3.3e-173 612.5 509 70.9
Cc07_g05990 Coffea canephora HOM05D005490 ORTHO05D006606 6.2e-172 608.2 484 74.8
TWI09G1398 Tripterygium wilfordii HOM05D005490 ORTHO05D006606 6.2e-172 608.2 485 73.2
Gohir.D11G199100 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.8e-171 606.7 485 72.6
Thecc.01G056300 Theobroma cacao HOM05D005490 ORTHO05D006606 2.4e-171 606.3 486 73.3
FAN19G0012 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.5e-170 603.6 499 72.7
Lj7A69T47 Lonicera japonica HOM05D005490 ORTHO05D006606 5.8e-170 601.7 520 69.4
FAN28G1226 Fragaria x ananassa HOM05D005490 ORTHO05D006606 2.9e-169 599.4 499 72.1
Lj2g0003149 Lotus japonicus HOM05D005490 ORTHO05D006606 8.4e-169 597.8 486 72.2
Dinv29986 Davidia involucrata HOM05D005490 ORTHO05D006606 3.2e-168 595.9 487 72.5
Sed0007368 Sechium edule HOM05D005490 ORTHO05D006606 3.2e-168 595.9 481 73.0
Cfa004023 Carpinus fangiana HOM05D005490 ORTHO05D006606 4.2e-168 595.5 488 72.7
Duzib187G0068 Durio zibethinus HOM05D005490 ORTHO05D006606 9.3e-168 594.3 499 70.9
GSVIVG01022130001 Vitis vinifera HOM05D005490 ORTHO05D006606 9.3e-168 594.3 484 71.9
Prupe.7G133300 Prunus persica HOM05D005490 ORTHO05D006606 1.2e-167 594.0 485 71.3
Nn5g30300 Nelumbo nucifera HOM05D005490 ORTHO05D006606 7.8e-167 591.3 485 71.3
Actinidia03792 Actinidia chinensis HOM05D005490 ORTHO05D006606 8.7e-166 587.8 482 71.4
Lalb_Chr05g0213291 Lupinus albus HOM05D005490 ORTHO05D006606 3.3e-165 585.9 488 71.1
arahy.Tifrunner.gnm1.ann1.JF37M9 Arachis hypogaea HOM05D005490 ORTHO05D006606 3.6e-164 582.4 483 72.5
TPR.G30705 Trifolium pratense HOM05D005490 ORTHO05D006606 3.6e-164 582.4 485 73.0
Nitab4.5_0002016g0110 Nicotiana tabacum HOM05D005490 ORTHO05D006606 6.2e-164 581.6 484 71.3
VMungo1215G3252 Vigna mungo HOM05D005490 ORTHO05D006606 1.1e-163 580.9 485 71.5
Oeu031525.2 Olea europaea HOM05D005490 ORTHO05D006606 5.3e-163 578.6 485 72.6
Gorai.007G213300 Gossypium raimondii HOM05D005490 ORTHO05D006606 2.6e-162 576.2 485 69.9
Gohir.A11G192400 Gossypium hirsutum HOM05D005490 ORTHO05D006606 3.4e-162 575.9 485 69.5
Glyma.01G186000 Glycine max HOM05D005490 ORTHO05D006606 7.6e-162 574.7 486 71.8
COL.COLO4_11415 Corchorus olitorius HOM05D005490 ORTHO05D006606 1.3e-161 573.9 448 74.6
Lsat_1_v5_gn_2_84101 Lactuca sativa HOM05D005490 ORTHO05D006606 1.4e-160 570.5 508 69.1
CsaV3_2G016660 Cucumis sativus L. HOM05D005490 ORTHO05D006606 2.4e-160 569.7 448 73.0
Medtr5g017430 Medicago truncatula HOM05D005490 ORTHO05D006606 5.4e-160 568.5 484 71.9
Migut.H00433 Erythranthe guttata HOM05D005490 ORTHO05D006606 9.3e-160 567.8 482 71.8
Sc03g0001580 Simmondsia chinensis HOM05D005490 ORTHO05D006606 9.3e-160 567.8 483 71.0
HanXRQChr14g0442791 Helianthus annuus HOM05D005490 ORTHO05D006606 2.3e-158 563.1 479 69.9
CANSAT01G1717 Cannabis sativa HOM05D005490 ORTHO05D006606 3.9e-158 562.4 453 72.0
Psat2g166360 Pisum sativum HOM05D005490 ORTHO05D006606 8.7e-158 561.2 486 70.4
Phvul.002G018900 Phaseolus vulgaris HOM05D005490 ORTHO05D006606 1.5e-157 560.5 486 69.5
PGSC0003DMG400004042 Solanum tuberosum HOM05D005490 ORTHO05D006606 9.6e-157 557.8 450 70.9
Oeu062437.1 Olea europaea HOM05D005490 ORTHO05D006606 2.1e-156 556.6 485 69.5
Solyc02g090850.3 Solanum lycopersicum HOM05D005490 ORTHO05D006606 2.8e-156 556.2 450 70.4
arahy.Tifrunner.gnm1.ann1.5GG3L5 Arachis hypogaea HOM05D005490 ORTHO05D006606 8.1e-156 554.7 512 67.0
Sabra07G0038800 Salix brachista HOM05D005490 ORTHO05D006606 9.0e-155 551.2 503 65.6
CSS0049924 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 3.4e-154 549.3 486 68.5
Glyma.11G056000 Glycine max HOM05D005490 ORTHO05D006606 7.6e-154 548.1 484 68.6
CAN.G660.7 Capsicum annuum HOM05D005490 ORTHO05D006606 1.3e-153 547.4 453 71.3
Hma1.2p1_0461F.1_g157810 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 2.9e-153 546.2 480 68.3
Gohir.A02G157300 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.1e-152 544.3 485 68.7
Ca_24770_v3 Cicer arietinum L. HOM05D005490 ORTHO05D006606 2.4e-152 543.1 449 72.2
ClCG02G012530 Citrullus lanatus HOM05D005490 ORTHO05D006606 5.5e-152 542.0 480 68.1
EL10Ac6g15745 Beta vulgaris HOM05D005490 ORTHO05D006606 2.1e-151 540.0 497 67.6
ECA238G0711 Erigeron canadensis HOM05D005490 ORTHO05D006606 6.7e-150 535.0 481 69.6
PSO170G3823 Papaver somniferum HOM05D005490 ORTHO05D006606 1.9e-149 533.5 451 70.3
PSO210G6251 Papaver somniferum HOM05D005490 ORTHO05D006606 4.3e-149 532.3 451 70.5
Hund16323 Selenicereus undatus HOM05D005490 ORTHO05D006606 4.8e-148 528.9 478 68.0
CDE08G0045 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 4.0e-147 525.8 491 64.2
Gorai.003G025100 Gossypium raimondii HOM05D005490 ORTHO05D006606 1.3e-145 520.8 485 67.6
SGA_v2.0_scaffold15G07303 Striga asiatica HOM05D005490 ORTHO05D006606 7.4e-141 505.0 445 68.5
Gohir.D03G023600 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.3e-140 504.2 451 69.4
AUR62001928 Chenopodium quinoa HOM05D005490 ORTHO05D006606 2.8e-140 503.1 510 60.0
Os03g0395900 Oryza sativa ssp. japonica HOM05D005490 ORTHO05D006606 9.0e-139 498.0 453 66.7
MD02G1172000 Malus domestica HOM05D005490 ORTHO05D006606 2.6e-138 496.5 379 73.1
Potri.005G138200 Populus trichocarpa HOM05D005490 ORTHO05D006606 8.5e-137 491.5 380 73.2
HPP92_004114 Vanilla planifolia HOM05D005490 ORTHO05D006606 8.5e-137 491.5 485 63.7
CDE06G1923 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.1e-136 491.1 465 63.7
ATR1102G026 Amborella trichopoda HOM05D005490 ORTHO05D006606 8.7e-134 481.5 491 62.3
Aqoxy5G01229 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 8.7e-134 481.5 381 71.4
FAN26G0668 Fragaria x ananassa HOM05D005490 ORTHO05D006606 8.2e-132 474.9 392 70.9
TAR381G1106 Trochodendron aralioides HOM05D005490 ORTHO05D006606 1.0e-129 468.0 379 70.4
Peaxi162Scf00450g00420 Petunia axillaris HOM05D005490 ORTHO05D006606 8.5e-129 464.9 484 58.5
FAN23G2111 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.8e-123 447.2 395 68.9
Sabra05G0112300 Salix brachista HOM05D005490 ORTHO05D006606 2.5e-120 436.8 519 56.5
AUR62003882 Chenopodium quinoa HOM05D005490 ORTHO05D006606 1.4e-110 404.4 474 54.2
Nitab4.5_0002440g0010 Nicotiana tabacum HOM05D005490 ORTHO05D006606 2.4e-107 393.7 487 52.4
Ah.03g145080 Amaranthus hybridus HOM05D005490 ORTHO05D006606 9.1e-107 391.7 382 66.2
FvH4_1g16060 Fragaria vesca HOM05D005490 ORTHO05D006606 5.5e-104 382.5 344 71.5
unitig_899.g14662 Utricularia gibba HOM05D005490 ORTHO05D006606 3.7e-100 369.8 385 62.6
Mapoly0012s0107 Marchantia polymorpha HOM05D005490 ORTHO05D006606 1.4e-99 367.9 468 52.6
Rhsim08G0100400 Rhododendron simsii HOM05D005490 ORTHO05D006606 1.2e-95 354.8 450 55.8
MD15G1284300 Malus domestica HOM05D005490 ORTHO05D006606 6.8e-94 349.0 337 66.2
Hma1.2p1_0461F.1_g157800 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 2.6e-93 347.1 344 66.6
Atru.chr3.327 Acer truncatum HOM05D005490 ORTHO05D006606 2.8e-92 343.6 310 70.6
Eucgr.I00926 Eucalyptus grandis HOM05D005490 ORTHO05D006606 7.0e-91 339.0 344 62.5
vmacro17955 Vaccinium macrocarpon HOM05D005490 ORTHO05D006606 7.3e-88 328.9 375 62.7
Dinv39848 Davidia involucrata HOM05D005490 ORTHO05D006606 8.9e-86 322.0 272 71.3
Pp3c7_5520 Physcomitrium patens HOM05D005490 ORTHO05D006606 2.0e-85 320.9 525 47.2
MELO3C020875.2 Cucumis melo HOM05D005490 ORTHO05D006606 7.5e-85 318.9 307 66.8
Pp3c11_20900 Physcomitrium patens HOM05D005490 ORTHO05D006606 4.4e-77 293.1 527 44.6
HPP92_004074 Vanilla planifolia HOM05D005490 ORTHO05D006606 4.4e-77 293.1 344 60.5
Sopen02g035470 Solanum pennellii HOM05D005490 ORTHO05D006606 6.4e-68 262.7 244 65.2
Haze_15401 Corylus avellana HOM05D005490 ORTHO05D006606 9.5e-64 248.8 234 67.1
Haze_15403 Corylus avellana HOM05D005490 ORTHO05D006606 2.3e-62 244.2 234 66.2
Actinidia16483 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.2e-61 241.9 311 57.2
Zm00001eb019290 Zea mays HOM05D005490 ORTHO05D006606 5.8e-61 239.6 272 58.8
SEGI_41077 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 4.1e-59 233.4 342 52.9
SMO356G0652 Selaginella moellendorffii HOM05D005490 ORTHO05D006606 1.6e-58 231.5 247 55.1
Cpa.g.sc55.148 Carica papaya HOM05D005490 ORTHO05D006606 1.5e-56 224.9 128 85.9
SEGI_00791 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 1.9e-56 224.6 149 74.5
CBR_g38045 Chara braunii HOM05D005490 ORTHO05D000004 3.3e-56 223.8 458 45.6
Atru.chr3.328 Acer truncatum HOM05D005490 ORTHO05D006606 2.8e-55 220.7 128 83.6
MD15G1284200 Malus domestica HOM05D005490 ORTHO05D006606 5.1e-49 199.9 128 78.9
Actinidia36493 Actinidia chinensis HOM05D005490 ORTHO05D006606 3.9e-41 173.7 354 42.1
Actinidia16484 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.3e-36 158.7 84 89.3
AagrBONN_evm.TU.Sc2ySwM_344.4468 Anthoceros agrestis HOM05D005490 ORTHO05D006606 4.9e-36 156.8 472 31.8
VMungo1309G0325 Vigna mungo HOM05D005490 ORTHO05D006606 1.5e-29 135.2 162 50.0
MD02G1172100 Malus domestica HOM05D005490 ORTHO05D006606 2.5e-27 127.9 106 75.5
CSS0031445 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 4.2e-27 127.1 110 70.9
Aqoxy5G01228 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 1.5e-24 118.6 114 65.8
VMungo0720G1861 Vigna mungo HOM05D005490 ORTHO05D006606 1.3e-23 115.5 145 47.6
SHI08459 Sapria himalayana HOM05D005490 ORTHO05D006606 6.9e-22 109.8 66 80.3
FAN22G1581 Fragaria x ananassa HOM05D005490 ORTHO05D006606 2.2e-20 104.8 72 72.2
FAN17G2271 Fragaria x ananassa HOM05D005490 ORTHO05D006606 7.2e-19 99.8 66 75.8
FAN17G1267 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.5e-16 92.0 64 76.6
TAR381G1012 Trochodendron aralioides HOM05D005490 ORTHO05D006606 1.9e-16 91.7 77 76.6
VMungo1309G1585 Vigna mungo HOM05D005490 ORTHO05D006606 7.4e-16 89.7 88 58.0
VMungo0251G2361 Vigna mungo HOM05D007793 ORTHO05D010104 2.2e-15 88.2 89 56.2
Actinidia36494 Actinidia chinensis HOM05D005490 ORTHO05D006606 5.5e-11 73.6 74 63.5
Atru.chr10.1611 Acer truncatum HOM05D005490 ORTHO05D006606 1.6e-10 72.0 50 68.0
CDE08G1038 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.6e-10 72.0 381 27.3
Cre12.g498350 Chlamydomonas reinhardtii HOM05D005490 ORTHO05D006606 1.4e-09 68.9 324 29.3
Actinidia12052 Actinidia chinensis HOM05D005490 ORTHO05D006606 9.1e-06 56.2 65 52.3


User provided reference genes

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