Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 7.5e-261 903.3 445 100.0
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 1.3e-249 865.9 443 94.8
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 6.2e-247 857.1 442 94.1
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.1e-246 856.3 443 94.4
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 2.1e-239 832.0 443 91.9
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 9.9e-237 823.2 463 86.8
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 4.7e-231 804.3 442 89.8
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 1.2e-229 799.7 444 86.0
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 2.6e-229 798.5 451 87.1
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 1.3e-228 796.2 442 88.7
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 6.4e-212 740.7 448 84.6
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 1.4e-211 739.6 411 88.8
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 3.7e-207 724.9 443 75.6
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 6.2e-207 724.2 443 76.7
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.8e-206 722.6 441 77.1
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 6.9e-206 720.7 443 75.8
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 2.2e-204 715.7 441 76.2
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 6.5e-204 714.1 443 75.6
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 8.4e-204 713.8 443 75.2
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 1.1e-203 713.4 443 74.9
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 4.2e-203 711.4 443 74.3
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 4.2e-203 711.4 443 74.3
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 9.3e-203 710.3 443 74.9
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 1.2e-202 709.9 443 76.3
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 6.0e-202 707.6 444 75.0
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 2.3e-201 705.7 443 73.4
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 6.7e-201 704.1 444 73.6
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 8.7e-201 703.7 474 71.1
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 2.5e-200 702.2 441 74.6
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 4.3e-200 701.4 443 74.3
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 9.7e-200 700.3 437 75.5
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 1.3e-199 699.9 443 74.5
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 1.6e-199 699.5 442 74.0
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 3.7e-199 698.4 443 74.5
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 3.7e-199 698.4 455 74.5
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 8.2e-199 697.2 441 73.9
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 1.1e-198 696.8 442 74.7
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 5.3e-198 694.5 442 74.4
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 1.2e-197 693.3 445 73.0
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 1.2e-197 693.3 441 74.1
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 1.5e-197 693.0 443 72.9
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.6e-197 692.2 440 74.5
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 2.6e-197 692.2 444 73.4
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 4.5e-197 691.4 436 74.5
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 7.7e-197 690.6 442 73.1
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.7e-196 689.5 443 73.4
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 8.5e-196 687.2 443 74.9
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 9.7e-192 673.7 449 71.5
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 1.3e-191 673.3 441 72.6
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 4.8e-191 671.4 435 73.3
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 8.2e-191 670.6 443 72.7
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.1e-190 670.2 441 72.6
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 6.9e-190 667.5 445 72.1
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 5.9e-189 664.5 443 72.7
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 7.7e-189 664.1 438 70.1
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 3.8e-188 661.8 441 71.2
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 6.5e-188 661.0 446 72.0
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.2e-186 656.8 439 69.2
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 4.7e-186 654.8 445 68.8
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.4e-185 653.3 436 72.2
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 5.1e-185 651.4 444 69.6
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 4.4e-184 648.3 468 69.4
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 1.7e-183 646.4 442 69.9
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 6.3e-183 644.4 445 70.1
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 1.1e-182 643.7 440 70.2
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 2.4e-182 642.5 448 68.1
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 4.1e-182 641.7 436 71.3
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 1.2e-181 640.2 443 67.3
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 1.9e-179 632.9 403 72.0
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 1.2e-178 630.2 419 71.8
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 2.5e-171 605.9 416 70.2
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 5.5e-171 604.7 434 74.0
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 1.2e-170 603.6 441 66.9
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 3.7e-167 592.0 464 63.8
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 2.4e-166 589.3 435 64.8
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 7.0e-166 587.8 421 68.9
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 9.1e-166 587.4 363 73.6
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 5.0e-164 581.6 445 64.7
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 8.5e-164 580.9 344 77.9
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 6.8e-161 571.2 387 70.0
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 6.8e-161 571.2 387 70.3
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 1.2e-160 570.5 383 70.0
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 1.5e-155 553.5 653 47.8
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 2.2e-151 539.7 349 74.2
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 1.6e-146 523.5 445 59.3
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 2.8e-146 522.7 443 60.7
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 4.7e-146 521.9 352 69.9
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 8.0e-146 521.2 438 56.8
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 7.0e-134 481.5 448 56.2
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 1.3e-132 477.2 441 55.6
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 1.7e-132 476.9 441 54.9
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 1.9e-131 473.4 389 59.6
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 1.9e-131 473.4 500 52.2
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 4.0e-129 465.7 445 54.6
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 1.2e-128 464.2 339 68.4
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 1.3e-127 460.7 363 61.2
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 1.4e-126 457.2 285 76.1
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 1.2e-125 454.1 381 62.7
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 2.3e-124 449.9 285 75.1
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 2.5e-123 446.4 282 75.2
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 1.4e-121 440.7 285 73.3
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 5.2e-121 438.7 279 76.3
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 6.0e-117 425.2 441 52.6
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.1e-115 421.0 446 51.3
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 1.8e-113 413.7 461 45.6
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 5.8e-112 408.7 441 51.9
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 1.2e-109 401.0 286 67.8
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 2.5e-107 393.3 443 49.9
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 6.2e-106 388.7 407 51.8
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 2.4e-105 386.7 287 64.5
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 4.8e-98 362.5 441 46.5
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 1.7e-95 354.0 212 80.2
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 6.5e-95 352.1 212 79.7
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 4.8e-90 335.9 418 45.9
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 1.6e-85 320.9 339 47.5
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 6.5e-71 272.3 152 84.2
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 4.7e-69 266.2 172 75.0
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 4.7e-69 266.2 172 75.0
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.0e-67 260.8 163 76.1
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 6.7e-60 235.7 152 69.1
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 1.8e-57 227.6 186 59.1
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 1.0e-47 195.3 123 69.9
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 2.5e-46 190.7 274 37.2
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.0e-44 185.3 127 64.6
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 5.2e-44 183.0 126 63.5
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 1.2e-43 181.8 128 61.7
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 8.3e-42 175.6 107 86.0
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.8e-41 174.5 95 85.3
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 7.7e-40 169.1 123 61.8
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 7.7e-40 169.1 129 61.2
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 3.3e-38 163.7 176 52.3
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 2.3e-31 141.0 95 66.3
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 3.3e-30 137.1 105 63.8
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 4.4e-27 126.7 91 64.8
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 1.2e-21 108.6 107 47.7
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.9e-17 94.7 45 95.6
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 7.1e-17 92.8 66 68.2
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.7e-15 88.2 69 60.9
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 6.6e-15 86.3 63 68.3
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 3.3e-14 84.0 63 66.7
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 6.2e-13 79.7 54 64.8
EL10Ac1g01043 Beta vulgaris HOM05D005203 ORTHO05D006383 9.9e-11 72.4 31 93.5


User provided reference genes

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