Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 8.4e-54 213.4 105 100.0
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 3.5e-52 208.0 105 96.2
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 3.0e-51 204.9 105 94.3
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 3.3e-50 201.4 105 91.4
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 5.7e-50 200.7 105 91.4
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 2.4e-48 195.3 105 89.5
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 6.9e-48 193.7 105 88.6
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 2.0e-47 192.2 105 87.6
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 8.5e-46 186.8 103 83.5
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 2.7e-44 181.8 103 83.5
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 1.1e-42 176.4 103 76.7
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 2.8e-41 171.8 103 76.7
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 4.8e-41 171.0 103 77.7
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 1.1e-40 169.9 103 76.7
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 1.1e-40 169.9 103 78.6
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 1.8e-40 169.1 103 75.7
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 2.4e-40 168.7 104 74.0
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 4.1e-40 167.9 103 76.7
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 4.1e-40 167.9 103 76.7
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 5.3e-40 167.5 103 75.7
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 6.9e-40 167.2 103 76.7
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 9.1e-40 166.8 103 75.7
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 9.1e-40 166.8 102 74.5
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 1.5e-39 166.0 103 75.7
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 1.5e-39 166.0 103 76.7
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 2.6e-39 165.2 103 75.7
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 2.6e-39 165.2 103 77.7
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 3.4e-39 164.9 103 74.8
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 4.5e-39 164.5 104 72.1
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 1.0e-38 163.3 103 72.8
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 1.0e-38 163.3 102 74.5
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 1.0e-38 163.3 103 71.8
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 1.3e-38 162.9 103 72.8
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 1.3e-38 162.9 103 72.8
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.7e-38 162.5 103 75.7
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 2.2e-38 162.2 103 73.8
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 2.9e-38 161.8 103 69.9
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 2.9e-38 161.8 103 72.8
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 5.0e-38 161.0 103 72.8
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 6.5e-38 160.6 103 72.8
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 1.1e-37 159.8 103 74.8
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 1.1e-37 159.8 103 72.8
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 1.9e-37 159.1 103 72.8
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 1.9e-37 159.1 103 71.8
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 2.5e-37 158.7 103 72.8
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 2.5e-37 158.7 103 75.7
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 2.5e-37 158.7 103 70.9
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 3.2e-37 158.3 103 71.8
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 3.2e-37 158.3 102 69.6
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 4.2e-37 157.9 103 71.8
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 4.2e-37 157.9 102 69.6
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 4.2e-37 157.9 102 69.6
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 4.2e-37 157.9 103 70.9
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 5.5e-37 157.5 103 73.8
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 5.5e-37 157.5 102 69.6
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 7.2e-37 157.1 103 73.8
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 7.2e-37 157.1 103 70.9
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 1.2e-36 156.4 103 69.9
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 1.2e-36 156.4 103 70.9
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.7e-36 155.2 102 68.6
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 3.6e-36 154.8 103 72.8
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 3.6e-36 154.8 103 68.9
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 4.7e-36 154.5 103 70.9
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 4.7e-36 154.5 103 68.0
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 6.1e-36 154.1 103 69.9
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 6.1e-36 154.1 102 69.6
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 6.1e-36 154.1 102 68.6
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 6.1e-36 154.1 103 71.8
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 6.1e-36 154.1 103 69.9
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 7.9e-36 153.7 103 68.9
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 7.9e-36 153.7 103 71.8
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 1.0e-35 153.3 103 69.9
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 1.4e-35 152.9 103 71.8
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 1.4e-35 152.9 103 71.8
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 1.8e-35 152.5 97 73.2
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 2.3e-35 152.1 103 68.9
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 3.0e-35 151.8 103 67.0
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 3.0e-35 151.8 103 68.9
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 3.9e-35 151.4 103 67.0
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 3.9e-35 151.4 103 67.0
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 1.1e-34 149.8 103 66.0
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 1.1e-34 149.8 103 67.0
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 2.0e-34 149.1 103 68.9
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 2.6e-34 148.7 103 68.9
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 5.7e-34 147.5 94 73.4
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 7.4e-34 147.1 103 67.0
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 9.7e-34 146.7 99 70.7
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 9.7e-34 146.7 103 66.0
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 1.3e-33 146.4 103 69.9
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 1.7e-33 146.0 103 66.0
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 1.7e-33 146.0 103 66.0
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 1.7e-33 146.0 103 65.0
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 2.2e-33 145.6 101 68.3
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 8.2e-33 143.7 101 68.3
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 9.1e-32 140.2 103 62.1
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 2.0e-31 139.0 103 65.0
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 1.7e-30 136.0 97 62.9
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 2.9e-30 135.2 92 68.5
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 1.5e-29 132.9 131 51.9
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 1.9e-29 132.5 94 63.8
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 1.9e-29 132.5 103 62.1
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 3.2e-29 131.7 102 63.7
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 3.2e-29 131.7 103 61.2
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 5.5e-29 131.0 101 58.4
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 9.4e-29 130.2 102 61.8
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 9.4e-29 130.2 76 84.2
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 3.6e-28 128.3 132 51.5
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 3.6e-28 128.3 100 56.0
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 1.8e-27 125.9 103 58.3
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 6.7e-27 124.0 78 75.6
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 8.8e-27 123.6 91 59.3
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 1.1e-26 123.2 105 61.0
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 2.6e-26 122.1 76 75.0
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 3.3e-26 121.7 103 55.3
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 5.7e-26 120.9 93 60.2
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 1.4e-24 116.3 76 75.0
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 2.4e-24 115.5 70 81.4
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 2.4e-24 115.5 70 81.4
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 2.4e-24 115.5 75 73.3
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 1.6e-23 112.8 93 54.8
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 4.5e-23 111.3 86 65.1
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 1.3e-22 109.8 96 52.1
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 2.9e-22 108.6 75 66.7
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 8.0e-20 100.5 84 57.1
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 2.3e-19 99.0 97 56.7
Sed0003931 Sechium edule HOM05D005747 ORTHO05D007159 2.6e-18 95.5 64 64.1
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 3.7e-17 91.7 103 50.5
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 3.7e-17 91.7 111 49.5
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 4.5e-15 84.7 50 84.0
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 7.7e-15 84.0 82 58.5
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 4.7e-12 74.7 45 71.1
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 1.4e-11 73.2 90 40.0
Lalb_Chr25g0289001 Lupinus albus HOM05D005747 ORTHO05D007159 1.1e-08 63.5 52 63.5
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 1.8e-08 62.8 42 61.9


User provided reference genes

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