Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0006s0147 Capsella rubella HOM05D007555 ORTHO05D009521 2.5e-98 362.1 177 100.0
AL6G11950 Arabidopsis lyrata HOM05D007555 ORTHO05D009521 2.7e-89 332.0 178 91.0
A10p33000 Brassica napus HOM05D007555 ORTHO05D009521 1.7e-86 322.8 178 89.3
C09p73970 Brassica napus HOM05D007555 ORTHO05D009521 8.3e-86 320.5 178 88.2
BraA10t45337Z Brassica rapa HOM05D007555 ORTHO05D009521 1.4e-85 319.7 178 88.8
BcaC06g32006 Brassica carinata HOM05D007555 ORTHO05D009521 3.1e-85 318.5 179 88.3
AT5G02710 Arabidopsis thaliana HOM05D007555 ORTHO05D009521 2.7e-84 315.5 178 87.6
Thhalv10014815m.g Eutrema salsugineum HOM05D007555 ORTHO05D009521 4.5e-84 314.7 177 86.4
BolC9t60132H Brassica oleracea HOM05D007555 ORTHO05D009521 2.9e-83 312.0 179 87.2
BcaNung03281 Brassica carinata HOM05D007555 ORTHO05D009521 2.5e-82 308.9 179 86.0
CARHR210660 Cardamine hirsuta HOM05D007555 ORTHO05D009521 7.2e-82 307.4 178 86.0
Aa31LG1G22170 Aethionema arabicum HOM05D007555 ORTHO05D009521 3.2e-77 292.0 179 81.6
Sp6g39860 Schrenkiella parvula HOM05D007555 ORTHO05D009521 2.4e-69 265.8 144 88.2
BolC1t02552H Brassica oleracea HOM05D007555 ORTHO05D009521 6.2e-65 251.1 167 78.4
THA.LOC104816299 Tarenaya hassleriana HOM05D007555 ORTHO05D009521 3.1e-64 248.8 185 69.2
C01p26070 Brassica napus HOM05D007555 ORTHO05D009521 9.8e-63 243.8 167 77.2
C02p41790 Brassica napus HOM05D007555 ORTHO05D009521 2.2e-62 242.7 156 78.8
BcaC03g16355 Brassica carinata HOM05D007555 ORTHO05D009521 1.2e-60 236.9 156 77.6
BcaC09g50387 Brassica carinata HOM05D007555 ORTHO05D009521 6.8e-56 221.1 181 66.9
Thecc.05G049100 Theobroma cacao HOM05D007555 ORTHO05D009521 1.3e-54 216.9 167 64.1
Nitab4.5_0000643g0170 Nicotiana tabacum HOM05D007555 ORTHO05D009521 1.2e-52 210.3 175 56.6
Prupe.6G246000 Prunus persica HOM05D007555 ORTHO05D009521 1.2e-52 210.3 161 62.1
MSTRG.26743 Avicennia marina HOM05D007555 ORTHO05D009521 2.1e-52 209.5 149 65.1
Sabra06G0166200 Salix brachista HOM05D007555 ORTHO05D009521 2.1e-52 209.5 163 61.3
Atru.chr8.2503 Acer truncatum HOM05D007555 ORTHO05D009521 2.7e-52 209.1 141 67.4
Gorai.002G252400 Gossypium raimondii HOM05D007555 ORTHO05D009521 2.7e-52 209.1 147 66.7
Gohir.D01G207300 Gossypium hirsutum HOM05D007555 ORTHO05D009521 4.6e-52 208.4 147 66.7
Potri.006G215300 Populus trichocarpa HOM05D007555 ORTHO05D009521 4.6e-52 208.4 162 62.3
Migut.L01641 Erythranthe guttata HOM05D007555 ORTHO05D009521 6.0e-52 208.0 179 50.8
Hma1.2p1_0111F.1_g053420 Hydrangea macrophylla HOM05D007555 ORTHO05D009521 7.8e-52 207.6 167 57.5
Eucgr.A01211 Eucalyptus grandis HOM05D007555 ORTHO05D009521 1.0e-51 207.2 159 62.9
CAN.G350.37 Capsicum annuum HOM05D007555 ORTHO05D009521 1.3e-51 206.8 151 63.6
Gohir.A01G218500 Gossypium hirsutum HOM05D007555 ORTHO05D009521 1.3e-51 206.8 147 66.0
MD12G1131600 Malus domestica HOM05D007555 ORTHO05D009521 2.3e-51 206.1 161 61.5
Actinidia05288 Actinidia chinensis HOM05D007555 ORTHO05D009521 3.0e-51 205.7 164 60.4
Ciclev10012844m.g Citrus clementina HOM05D007555 ORTHO05D009521 3.0e-51 205.7 173 60.1
TWI53G2115 Tripterygium wilfordii HOM05D007555 ORTHO05D009521 5.1e-51 204.9 131 67.9
Solyc09g006000.3 Solanum lycopersicum HOM05D007555 ORTHO05D009521 6.6e-51 204.5 184 53.3
SGA_v2.0_scaffold94G28647 Striga asiatica HOM05D007555 ORTHO05D009521 8.6e-51 204.1 174 53.4
Nitab4.5_0006252g0040 Nicotiana tabacum HOM05D007555 ORTHO05D009521 1.5e-50 203.4 186 56.5
Dinv37229 Davidia involucrata HOM05D007555 ORTHO05D009521 2.5e-50 202.6 161 59.0
Glyma.13G134800 Glycine max HOM05D007555 ORTHO05D009521 2.5e-50 202.6 174 56.3
Nn2g12825 Nelumbo nucifera HOM05D000419 ORTHO05D000692 5.6e-50 201.4 151 61.6
ATR0693G428 Amborella trichopoda HOM05D007555 ORTHO05D009521 7.3e-50 201.1 139 66.2
QL07p045973 Quercus lobata HOM05D007555 ORTHO05D009521 7.3e-50 201.1 141 66.0
GSVIVG01025579001 Vitis vinifera HOM05D007555 ORTHO05D009521 7.3e-50 201.1 129 68.2
VMungo0720G3150 Vigna mungo HOM05D007555 ORTHO05D009521 9.6e-50 200.7 174 56.9
DCAR_017749 Daucus carota HOM05D007555 ORTHO05D009521 1.2e-49 200.3 151 58.9
Cpa.g.sc114.21 Carica papaya HOM05D007555 ORTHO05D009521 2.8e-49 199.1 151 62.3
Medtr1g067330 Medicago truncatula HOM05D007555 ORTHO05D009521 3.6e-49 198.7 172 54.7
PSO339G2355 Papaver somniferum HOM05D007555 ORTHO05D009521 3.6e-49 198.7 182 55.5
Phvul.007G161000 Phaseolus vulgaris HOM05D007555 ORTHO05D009521 3.6e-49 198.7 174 55.2
Haze_20696 Corylus avellana HOM05D007555 ORTHO05D009521 4.7e-49 198.4 150 62.0
ECA238G3221 Erigeron canadensis HOM05D000025 ORTHO05D000040 1.1e-48 197.2 136 65.4
PSO384G0825 Papaver somniferum HOM05D007555 ORTHO05D009521 1.1e-48 197.2 181 55.8
EL10Ac9g22121 Beta vulgaris HOM05D007555 ORTHO05D009521 1.4e-48 196.8 159 58.5
ClCG04G008630 Citrullus lanatus HOM05D007555 ORTHO05D009521 1.8e-48 196.4 167 58.1
Aqoxy2G01932 Aquilegia oxysepala HOM05D007555 ORTHO05D009521 3.1e-48 195.7 130 66.2
Manes.08G000300 Manihot esculenta HOM05D007555 ORTHO05D009521 4.0e-48 195.3 119 70.6
Hund06478 Selenicereus undatus HOM05D007555 ORTHO05D009521 6.8e-48 194.5 170 57.6
Lj5g0027152 Lotus japonicus HOM05D007555 ORTHO05D009521 8.9e-48 194.1 167 54.5
CsaV3_4G024530 Cucumis sativus L. HOM05D007555 ORTHO05D009521 1.5e-47 193.4 165 57.6
MELO3C003085.2 Cucumis melo HOM05D007555 ORTHO05D009521 2.0e-47 193.0 167 55.7
vmacro08680 Vaccinium macrocarpon HOM05D007555 ORTHO05D009521 4.4e-47 191.8 165 55.2
Cc06_g03250 Coffea canephora HOM05D007555 ORTHO05D009521 1.3e-46 190.3 124 64.5
FAN09G3476 Fragaria x ananassa HOM05D007555 ORTHO05D009521 2.2e-46 189.5 157 59.9
RcHm_v2.0_Chr3g0468011 Rosa chinensis HOM05D007555 ORTHO05D009521 2.2e-46 189.5 160 57.5
CDE05G2937 Ceratophyllum demersum HOM05D007555 ORTHO05D009521 2.9e-46 189.1 125 62.4
HanXRQChr07g0204191 Helianthus annuus HOM05D007555 ORTHO05D009521 2.9e-46 189.1 171 50.9
Ah.01g007300 Amaranthus hybridus HOM05D007555 ORTHO05D009521 4.9e-46 188.3 172 54.7
Sed0003448 Sechium edule HOM05D007555 ORTHO05D009521 4.9e-46 188.3 165 55.2
CiPaw.09G185700 Carya illinoinensis HOM05D007555 ORTHO05D009521 6.4e-46 188.0 159 57.9
PGR004G0254 Punica granatum HOM05D007555 ORTHO05D009521 6.4e-46 188.0 161 55.3
FvH4_6g14780 Fragaria vesca HOM05D007555 ORTHO05D009521 8.4e-46 187.6 160 58.1
FAN05G0792 Fragaria x ananassa HOM05D007555 ORTHO05D009521 8.4e-46 187.6 168 56.5
FAN14G0454 Fragaria x ananassa HOM05D007555 ORTHO05D009521 8.4e-46 187.6 160 58.1
TPR.G7549 Trifolium pratense HOM05D007555 ORTHO05D009521 1.9e-45 186.4 120 66.7
AUR62030924 Chenopodium quinoa HOM05D007555 ORTHO05D009521 7.1e-45 184.5 170 52.9
Psat6g069400 Pisum sativum HOM05D007555 ORTHO05D009521 1.2e-44 183.7 171 53.2
arahy.Tifrunner.gnm1.ann1.UIJ5I4 Arachis hypogaea HOM05D007555 ORTHO05D009521 3.5e-44 182.2 168 53.6
arahy.Tifrunner.gnm1.ann1.ASDQ9T Arachis hypogaea HOM05D007555 ORTHO05D009521 3.0e-43 179.1 167 53.3
SEGI_01945 Sequoiadendron giganteum HOM05D007555 ORTHO05D009521 1.9e-42 176.4 161 52.2
unitig_0.g697 Utricularia gibba HOM05D000139 ORTHO05D009521 3.3e-42 175.6 132 58.3
Lj2P231T24 Lonicera japonica HOM05D007555 ORTHO05D009521 1.4e-40 170.2 116 61.2
Zm00001eb017700 Zea mays HOM05D007555 ORTHO05D009521 1.4e-40 170.2 115 63.5
Cfa017464 Carpinus fangiana HOM05D007555 ORTHO05D009521 1.2e-39 167.2 162 51.9
Lsat_1_v5_gn_2_111420 Lactuca sativa HOM05D007555 ORTHO05D009521 5.8e-39 164.9 122 61.5
Sc08g0004110 Simmondsia chinensis HOM05D007555 ORTHO05D009521 6.4e-38 161.4 118 61.0
Medtr0016s0020 Medicago truncatula HOM05D007555 ORTHO05D009521 5.4e-37 158.3 141 51.8
PGSC0003DMG400023920 Solanum tuberosum HOM05D007555 ORTHO05D009521 9.3e-37 157.5 193 46.1
Os03g0363400 Oryza sativa ssp. japonica HOM05D007555 ORTHO05D009521 1.7e-35 153.3 117 56.4
Lalb_Chr02g0153411 Lupinus albus HOM05D007555 ORTHO05D009521 2.1e-33 146.4 87 74.7
Pp3c1_22520 Physcomitrium patens HOM05D007555 ORTHO05D009521 3.6e-33 145.6 167 45.5
Peaxi162Scf00597g00516 Petunia axillaris HOM05D007555 ORTHO05D009521 6.9e-32 141.4 179 43.0
FAN02G2228 Fragaria x ananassa HOM05D007555 ORTHO05D009521 3.7e-25 119.0 88 56.8
TAR636G0687 Trochodendron aralioides HOM05D007555 ORTHO05D009521 4.9e-22 108.6 92 54.3
SEGI_05937 Sequoiadendron giganteum HOM05D007555 ORTHO05D009521 1.5e-15 87.0 56 66.1
Lj2A103T67 Lonicera japonica HOM05D007555 ORTHO05D009521 2.2e-14 83.2 167 33.5
COL.COLO4_10316 Corchorus olitorius HOM05D007555 ORTHO05D009521 4.2e-13 79.0 67 56.7
Lalb_Chr02g0153401 Lupinus albus HOM05D007555 ORTHO05D009521 1.5e-10 70.5 41 73.2
CSS0046800 Camellia sinensis var. sinensis HOM05D007555 ORTHO05D009521 1.1e-08 64.3 86 41.9
BolC2t10195H Brassica oleracea HOM05D007555 ORTHO05D009521 1.2e-07 60.8 51 72.5


User provided reference genes

Program Settings