Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 5.3e-93 344.4 175 100.0
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 1.8e-85 319.3 175 93.1
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.4e-85 318.9 175 94.3
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 2.4e-85 318.9 175 91.4
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 3.4e-84 315.1 175 94.3
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 5.9e-84 314.3 175 91.4
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 5.9e-84 314.3 175 91.4
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 1.3e-83 313.2 175 90.9
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 4.2e-82 308.1 175 90.9
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 1.4e-80 303.1 175 89.7
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 3.0e-80 302.0 178 88.2
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 1.1e-77 293.5 169 89.3
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 1.5e-66 256.5 168 80.4
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 1.8e-64 249.6 176 78.4
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.3e-62 243.4 172 72.7
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 2.2e-62 242.7 136 89.0
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 1.2e-60 236.9 136 87.5
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.7e-52 209.1 175 64.0
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 2.7e-49 199.1 177 61.6
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 3.6e-49 198.7 176 60.2
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 6.1e-49 198.0 175 60.6
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 8.0e-49 197.6 136 72.8
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 1.8e-48 196.4 173 58.4
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 3.0e-48 195.7 175 59.4
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 5.2e-48 194.9 175 59.4
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 5.2e-48 194.9 175 60.0
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 1.5e-47 193.4 170 61.2
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 5.7e-47 191.4 182 57.1
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 9.8e-47 190.7 175 57.7
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 1.3e-46 190.3 172 60.5
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.3e-46 190.3 186 55.4
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 1.7e-46 189.9 175 58.3
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 3.7e-46 188.7 175 56.6
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 3.7e-46 188.7 173 59.0
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 3.7e-46 188.7 175 60.0
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 6.3e-46 188.0 175 59.4
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.8e-45 186.4 174 56.9
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.8e-45 186.4 174 56.9
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 1.8e-45 186.4 178 60.1
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 2.4e-45 186.0 172 57.6
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 7.0e-45 184.5 173 58.4
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 1.2e-44 183.7 179 55.9
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 1.2e-44 183.7 169 58.0
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 7.7e-44 181.0 173 57.8
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.0e-43 180.6 176 57.4
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 1.0e-43 180.6 173 57.8
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 1.3e-43 180.3 172 58.1
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 5.0e-43 178.3 173 57.2
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 1.1e-42 177.2 174 56.3
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 1.1e-42 177.2 162 57.4
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 1.5e-42 176.8 175 58.3
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.9e-42 176.4 168 58.3
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.5e-42 176.0 176 56.8
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 3.6e-41 172.2 170 54.1
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 6.1e-41 171.4 177 55.9
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 8.0e-41 171.0 175 50.9
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 8.0e-41 171.0 175 55.4
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 8.0e-41 171.0 177 55.4
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 8.0e-41 171.0 178 53.9
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 1.0e-40 170.6 174 56.3
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 1.0e-40 170.6 179 52.0
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 1.4e-40 170.2 178 53.4
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 5.2e-40 168.3 187 51.3
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 1.2e-39 167.2 171 55.0
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.5e-39 166.8 175 52.0
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 5.7e-39 164.9 175 51.4
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 5.7e-39 164.9 187 52.4
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 1.7e-38 163.3 106 80.2
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 1.7e-38 163.3 106 80.2
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 1.7e-38 163.3 178 50.6
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.4e-37 160.2 173 51.4
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 9.2e-37 157.5 181 50.8
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 9.2e-37 157.5 181 50.8
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.0e-36 156.4 173 50.9
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 2.7e-36 156.0 174 50.6
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 2.7e-36 156.0 98 81.6
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 4.6e-36 155.2 180 50.6
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.3e-35 153.7 177 48.6
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.7e-35 153.3 181 49.2
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 2.9e-35 152.5 175 53.1
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 5.0e-35 151.8 175 50.3
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 6.6e-35 151.4 177 50.3
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 1.9e-34 149.8 167 47.9
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 2.5e-34 149.4 173 49.1
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 4.3e-34 148.7 119 63.0
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.3e-34 148.7 242 42.1
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 1.6e-33 146.7 158 53.8
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 2.8e-33 146.0 180 46.1
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 3.6e-33 145.6 172 52.3
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 4.7e-33 145.2 174 45.4
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 4.7e-33 145.2 163 46.0
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 8.0e-33 144.4 104 69.2
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 8.0e-33 144.4 172 48.3
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 8.0e-33 144.4 175 49.1
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 1.0e-32 144.1 177 46.9
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 1.0e-32 144.1 169 52.1
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 5.2e-32 141.7 112 65.2
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 6.8e-32 141.4 162 51.2
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 8.9e-32 141.0 146 52.7
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 8.9e-32 141.0 127 58.3
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.2e-31 140.6 137 54.7
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 1.2e-31 140.6 190 45.3
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 1.5e-31 140.2 174 46.6
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 1.5e-31 140.2 174 46.0
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 2.6e-31 139.4 152 52.6
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 2.6e-31 139.4 172 47.1
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 3.4e-31 139.0 175 45.1
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 4.4e-31 138.7 165 50.3
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 2.9e-30 136.0 175 45.1
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 2.9e-30 136.0 172 46.5
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 6.4e-30 134.8 175 47.4
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 1.1e-29 134.0 182 45.1
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 1.4e-29 133.7 174 46.0
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 1.9e-29 133.3 160 48.1
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.2e-28 130.6 182 43.4
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 2.7e-28 129.4 158 47.5
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 7.8e-28 127.9 176 43.2
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 1.7e-27 126.7 113 57.5
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 2.3e-27 126.3 178 41.6
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 1.9e-26 123.2 177 42.9
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 2.5e-26 122.9 106 57.5
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 9.5e-26 120.9 174 42.0
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 4.7e-25 118.6 106 56.6
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 1.1e-24 117.5 169 46.2
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 3.1e-24 115.9 177 42.9
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 8.9e-24 114.4 81 69.1
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 5.8e-23 111.7 187 38.0
AL4G14440 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 4.1e-21 105.5 62 83.9
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 3.0e-19 99.4 167 34.7
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 3.9e-19 99.0 127 47.2
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 3.9e-19 99.0 106 46.2
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 1.5e-18 97.1 106 45.3
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 3.3e-18 95.9 75 62.7
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 3.6e-17 92.4 108 53.7
BcaC09g50389 Brassica carinata HOM05D015100 ORTHO05D005488 8.9e-16 87.8 64 75.0
BolC9t53790H Brassica oleracea HOM05D015100 ORTHO05D005488 8.9e-16 87.8 64 75.0
BolC9t55552H Brassica oleracea HOM05D015100 ORTHO05D005488 1.5e-15 87.0 66 72.7
BolC1t01821H Brassica oleracea HOM05D015100 ORTHO05D005488 2.6e-15 86.3 66 72.7
BolC1t02550H Brassica oleracea HOM05D015100 ORTHO05D005488 3.4e-15 85.9 64 73.4
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 1.7e-14 83.6 111 45.0
BraA05t19187Z Brassica rapa HOM05D015100 ORTHO05D005488 4.1e-13 79.0 101 48.5
Thhalv10016561m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 7.1e-13 78.2 59 72.9
BraA03t11517Z Brassica rapa HOM05D000171 ORTHO05D000101 1.5e-10 70.5 39 89.7
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 5.6e-10 68.6 94 38.3
MCO11G196 Micromonas commoda HOM05D004876 ORTHO05D005488 5.6e-10 68.6 120 32.5
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 8.1e-09 64.7 141 36.2
AT2G40910 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.4e-08 63.9 54 63.0
C03p27210 Brassica napus HOM05D015100 ORTHO05D031876 6.8e-08 61.6 69 60.9
BolC3t15102H Brassica oleracea HOM05D015100 ORTHO05D031876 6.8e-08 61.6 69 60.9
BcaC01g05378 Brassica carinata HOM05D015100 ORTHO05D031876 2.0e-07 60.1 71 57.7
Carub.0004s2322 Capsella rubella HOM05D000171 ORTHO05D000101 4.4e-07 58.9 59 57.6
AL4G38850 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.7e-06 57.0 56 62.5


User provided reference genes

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