Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0004s1719 Capsella rubella HOM05D006137 ORTHO05D007697 6.9e-218 760.4 389 100.0
AL4G31550 Arabidopsis lyrata HOM05D006137 ORTHO05D007697 2.3e-205 718.8 393 94.9
Thhalv10016768m.g Eutrema salsugineum HOM05D006137 ORTHO05D007697 2.5e-199 698.7 393 92.4
AT2G35500 Arabidopsis thaliana HOM05D006137 ORTHO05D007697 3.9e-197 691.4 392 91.8
Sp4g17720 Schrenkiella parvula HOM05D006137 ORTHO05D007697 1.3e-195 686.4 393 90.6
C04p64320 Brassica napus HOM05D006137 ORTHO05D007697 8.2e-195 683.7 392 89.5
CARHR129650 Cardamine hirsuta HOM05D006137 ORTHO05D007697 1.5e-193 679.5 392 89.5
BcaB06g28845 Brassica carinata HOM05D006137 ORTHO05D007697 2.6e-193 678.7 383 90.6
A04p26930 Brassica napus HOM05D006137 ORTHO05D007697 1.3e-192 676.4 394 89.1
BraA04t18192Z Brassica rapa HOM05D006137 ORTHO05D007697 1.7e-192 676.0 394 89.6
BolC4t27919H Brassica oleracea HOM05D006137 ORTHO05D007697 3.2e-191 671.8 393 88.3
BcaC02g07708 Brassica carinata HOM05D006137 ORTHO05D007697 7.2e-167 590.9 307 96.4
Aa31LG9G15490 Aethionema arabicum HOM05D006137 ORTHO05D007697 1.2e-158 563.5 392 77.0
THA.LOC104814417 Tarenaya hassleriana HOM05D006137 ORTHO05D007697 1.3e-147 526.9 381 73.0
Thecc.03G309800 Theobroma cacao HOM05D006137 ORTHO05D007697 8.6e-136 487.6 331 73.4
Gohir.A12G206400 Gossypium hirsutum HOM05D006137 ORTHO05D007697 3.3e-135 485.7 338 71.6
Duzib068G1414 Durio zibethinus HOM05D006137 ORTHO05D007697 6.2e-134 481.5 334 72.8
Potri.003G096600 Populus trichocarpa HOM05D006137 ORTHO05D007697 5.2e-133 478.4 381 65.1
Gohir.D12G208800 Gossypium hirsutum HOM05D006137 ORTHO05D007697 6.8e-133 478.0 389 64.8
Gorai.008G224300 Gossypium raimondii HOM05D006137 ORTHO05D007697 8.9e-133 477.6 389 64.3
Ciclev10001458m.g Citrus clementina HOM05D006137 ORTHO05D007697 7.5e-132 474.6 385 67.0
TWI15G1160 Tripterygium wilfordii HOM05D006137 ORTHO05D007697 3.7e-131 472.2 358 68.2
CsaV3_3G001380 Cucumis sativus L. HOM05D006137 ORTHO05D007697 1.1e-130 470.7 379 64.9
CSS0021967 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 1.4e-130 470.3 345 67.5
COL.COLO4_16947 Corchorus olitorius HOM05D006137 ORTHO05D007697 2.4e-130 469.5 301 75.7
MD06G1026400 Malus domestica HOM05D006137 ORTHO05D007697 3.2e-130 469.2 384 64.8
MELO3C013825.2 Cucumis melo HOM05D006137 ORTHO05D007697 4.1e-130 468.8 376 64.9
Dinv25255 Davidia involucrata HOM05D006137 ORTHO05D007697 9.2e-130 467.6 379 64.1
GSVIVG01013108001 Vitis vinifera HOM05D006137 ORTHO05D007697 6.0e-129 464.9 317 72.9
PGR042G0393 Punica granatum HOM05D006137 ORTHO05D007697 7.8e-129 464.5 388 63.7
Sabra03G0065200 Salix brachista HOM05D006137 ORTHO05D007697 7.8e-129 464.5 315 72.1
RcHm_v2.0_Chr7g0211741 Rosa chinensis HOM05D006137 ORTHO05D007697 3.0e-128 462.6 306 72.2
FvH4_5g23010 Fragaria vesca HOM05D006137 ORTHO05D007697 5.1e-128 461.8 320 69.4
Atru.chr6.1520 Acer truncatum HOM05D006137 ORTHO05D007697 1.5e-127 460.3 310 73.9
arahy.Tifrunner.gnm1.ann1.3JZK2J Arachis hypogaea HOM05D006137 ORTHO05D007697 1.5e-127 460.3 316 70.6
arahy.Tifrunner.gnm1.ann1.J91B8N Arachis hypogaea HOM05D006137 ORTHO05D007697 1.5e-127 460.3 316 70.6
CiPaw.11G098100 Carya illinoinensis HOM05D006137 ORTHO05D007697 5.6e-127 458.4 316 71.5
Medtr5g029550 Medicago truncatula HOM05D006137 ORTHO05D007697 5.6e-127 458.4 315 69.8
Nn3g19394 Nelumbo nucifera HOM05D006137 ORTHO05D007697 1.2e-126 457.2 325 68.3
TAR629G2895 Trochodendron aralioides HOM05D006137 ORTHO05D007697 1.2e-126 457.2 382 64.1
FAN08G1929 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.1e-126 456.4 320 68.4
FAN18G2668 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.8e-126 456.1 304 71.4
FvH4_2g06760 Fragaria vesca HOM05D006137 ORTHO05D007697 6.2e-126 454.9 306 71.2
VMungo1215G0535 Vigna mungo HOM05D006137 ORTHO05D007697 1.4e-125 453.8 314 69.7
FAN04G0555 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.8e-125 453.4 320 67.8
Lalb_Chr09g0325501 Lupinus albus HOM05D006137 ORTHO05D007697 2.3e-125 453.0 314 68.8
TPR.G19427 Trifolium pratense HOM05D006137 ORTHO05D007697 2.3e-125 453.0 345 64.9
Lj3g0008594 Lotus japonicus HOM05D006137 ORTHO05D007697 8.9e-125 451.1 329 66.6
CSS0050317 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 3.4e-124 449.1 307 70.0
Aqoxy2G03876 Aquilegia oxysepala HOM05D006137 ORTHO05D007697 3.7e-123 445.7 324 66.4
FAN13G2862 Fragaria x ananassa HOM05D006137 ORTHO05D007697 3.7e-123 445.7 337 65.3
Glyma.01G014900 Glycine max HOM05D006137 ORTHO05D007697 4.9e-123 445.3 313 69.3
Phvul.002G137400 Phaseolus vulgaris HOM05D006137 ORTHO05D007697 8.3e-123 444.5 314 68.5
FAN18G2637 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.1e-122 444.1 355 62.5
Hma1.2p1_1027F.1_g249480 Hydrangea macrophylla HOM05D006137 ORTHO05D007697 4.1e-122 442.2 325 67.4
Peaxi162Scf00170g00615 Petunia axillaris HOM05D006137 ORTHO05D007697 2.7e-121 439.5 377 58.6
PGSC0003DMG400014792 Solanum tuberosum HOM05D006137 ORTHO05D007697 2.7e-121 439.5 316 66.1
ClCG10G001310 Citrullus lanatus HOM05D006137 ORTHO05D007697 3.5e-121 439.1 409 57.2
Nitab4.5_0002190g0020 Nicotiana tabacum HOM05D006137 ORTHO05D007697 3.5e-121 439.1 374 61.8
Solyc08g076410.4 Solanum lycopersicum HOM05D006137 ORTHO05D007697 6.0e-121 438.3 316 65.8
Psat2g138120 Pisum sativum HOM05D006137 ORTHO05D007697 1.0e-120 437.6 316 67.7
Sopen08g024990 Solanum pennellii HOM05D006137 ORTHO05D007697 2.3e-120 436.4 388 58.5
CAN.G726.20 Capsicum annuum HOM05D006137 ORTHO05D007697 1.9e-119 433.3 324 64.5
Cc08_g03270 Coffea canephora HOM05D006137 ORTHO05D007697 7.3e-119 431.4 334 63.5
CANSAT21G0809 Cannabis sativa HOM05D006137 ORTHO05D007697 2.1e-118 429.9 310 68.7
Rhsim11G0021000 Rhododendron simsii HOM05D006137 ORTHO05D007697 2.1e-118 429.9 346 64.2
PSO782G3150 Papaver somniferum HOM05D006137 ORTHO05D007697 3.6e-118 429.1 379 56.7
CANSAT21G0548 Cannabis sativa HOM05D006137 ORTHO05D007697 8.1e-118 427.9 310 68.4
HanXRQChr04g0098961 Helianthus annuus HOM05D006137 ORTHO05D007697 1.4e-117 427.2 321 65.7
ECA233G6209 Erigeron canadensis HOM05D006137 ORTHO05D007697 3.1e-117 426.0 318 64.2
Sed0022354 Sechium edule HOM05D006137 ORTHO05D007697 3.1e-117 426.0 301 68.4
EL10Ac2g03238 Beta vulgaris HOM05D006137 ORTHO05D007697 4.0e-117 425.6 298 69.1
Oeu017078.1 Olea europaea HOM05D006137 ORTHO05D007697 6.4e-115 418.3 302 67.2
CDE06G2536 Ceratophyllum demersum HOM05D006137 ORTHO05D007697 4.6e-113 412.1 397 56.7
Nitab4.5_0003416g0030 Nicotiana tabacum HOM05D006137 ORTHO05D007697 8.7e-112 407.9 382 56.8
Migut.A01172 Erythranthe guttata HOM05D006137 ORTHO05D007697 4.3e-111 405.6 322 63.7
PSO063G4597 Papaver somniferum HOM05D006137 ORTHO05D007697 4.3e-111 405.6 301 64.5
DCAR_008226 Daucus carota HOM05D006137 ORTHO05D007697 2.8e-110 402.9 298 66.8
Ah.09g233490 Amaranthus hybridus HOM05D006137 ORTHO05D007697 8.1e-110 401.4 309 63.4
unitig_748.g7545 Utricularia gibba HOM05D006137 ORTHO05D007697 9.0e-109 397.9 386 54.9
FAN24G0436 Fragaria x ananassa HOM05D006137 ORTHO05D007697 4.4e-108 395.6 279 68.8
Os10g0577700 Oryza sativa ssp. japonica HOM05D006137 ORTHO05D007697 9.9e-108 394.4 312 62.5
Sc24g0002950 Simmondsia chinensis HOM05D006137 ORTHO05D007697 3.8e-107 392.5 288 66.3
QL12p001513 Quercus lobata HOM05D006137 ORTHO05D007697 1.9e-106 390.2 352 59.4
Lsat_1_v5_gn_6_3681 Lactuca sativa HOM05D006137 ORTHO05D007697 5.4e-106 388.7 384 56.5
vmacro08163 Vaccinium macrocarpon HOM05D006137 ORTHO05D007697 3.6e-102 375.9 275 67.6
HPP92_014848 Vanilla planifolia HOM05D006137 ORTHO05D007697 4.8e-102 375.6 339 54.6
MSTRG.24846 Avicennia marina HOM05D006137 ORTHO05D007697 8.1e-102 374.8 381 53.0
Eucgr.E00233 Eucalyptus grandis HOM05D006137 ORTHO05D007697 1.4e-101 374.0 290 64.5
Prupe.5G028300 Prunus persica HOM05D006137 ORTHO05D007697 1.8e-101 373.6 319 60.8
Zm00001eb025030 Zea mays HOM05D006137 ORTHO05D007697 7.6e-100 368.2 312 59.0
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 3.2e-98 362.8 283 64.7
Oeu019613.1 Olea europaea HOM05D006137 ORTHO05D007697 5.4e-98 362.1 291 62.2
ATR0829G218 Amborella trichopoda HOM05D006137 ORTHO05D007697 5.3e-93 345.5 277 61.4
Oeu019614.1 Olea europaea HOM05D006137 ORTHO05D007697 1.0e-91 341.3 322 55.9
FAN20G1935 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.7e-91 340.5 306 59.5
Lj2A232T29 Lonicera japonica HOM05D006137 ORTHO05D007697 1.7e-91 340.5 328 55.5
Oeu002327.1 Olea europaea HOM05D006137 ORTHO05D007697 4.2e-90 335.9 225 71.1
SEGI_14560 Sequoiadendron giganteum HOM05D006137 ORTHO05D007697 1.3e-86 324.3 357 50.1
Haze_08142 Corylus avellana HOM05D006137 ORTHO05D007697 6.9e-85 318.5 465 41.9
Mapoly0006s0263 Marchantia polymorpha HOM05D006137 ORTHO05D007697 3.2e-82 309.7 356 46.9
Eucgr.E00231 Eucalyptus grandis HOM05D006137 ORTHO05D007697 4.1e-77 292.7 266 56.8
SMO228G0118 Selaginella moellendorffii HOM05D006137 ORTHO05D007697 2.2e-75 287.0 304 48.4
Pp3c12_17740 Physcomitrium patens HOM05D006137 ORTHO05D007697 8.8e-72 275.0 337 41.8
AagrBONN_evm.TU.Sc2ySwM_344.1996 Anthoceros agrestis HOM05D006137 ORTHO05D007697 1.8e-69 267.3 380 40.8
Manes.15G185701 Manihot esculenta HOM05D006137 ORTHO05D007697 2.6e-68 263.5 243 60.1
C03p78000 Brassica napus HOM05D006137 ORTHO05D007697 1.1e-63 248.1 178 73.0
Hund09822 Selenicereus undatus HOM05D006137 ORTHO05D007697 8.2e-62 241.9 153 75.8
Ca_25185_v3 Cicer arietinum L. HOM05D006137 ORTHO05D007697 9.1e-61 238.4 200 61.5
AUR62002644 Chenopodium quinoa HOM05D006137 ORTHO05D007697 7.7e-60 235.3 199 60.3
BolC1t02019H Brassica oleracea HOM05D006137 ORTHO05D007697 1.4e-56 224.6 169 72.2
C01p20920 Brassica napus HOM05D006137 ORTHO05D007697 2.9e-51 206.8 174 66.7
BolC3t20061H Brassica oleracea HOM05D006137 ORTHO05D007697 3.8e-51 206.5 176 65.3
Oeu033557.2 Olea europaea HOM05D006137 ORTHO05D007697 3.0e-48 196.8 163 59.5
AUR62002645 Chenopodium quinoa HOM05D006137 ORTHO05D007697 7.7e-44 182.2 226 45.6
AUR62040998 Chenopodium quinoa HOM05D006137 ORTHO05D007697 9.4e-42 175.3 134 62.7
Hund09821 Selenicereus undatus HOM05D006137 ORTHO05D000006 3.4e-39 166.8 129 60.5
CBR_g18978 Chara braunii HOM05D006137 ORTHO05D007697 6.1e-33 146.0 179 47.5
Glyma.07G152633 Glycine max HOM05D006137 ORTHO05D007697 5.7e-31 139.4 112 63.4
MCO11G470 Micromonas commoda HOM05D006137 ORTHO05D007697 2.4e-29 134.0 203 33.5
Medtr1g009450 Medicago truncatula HOM05D006137 ORTHO05D007697 2.3e-27 127.5 126 54.8
AUR62040999 Chenopodium quinoa HOM05D006137 ORTHO05D007697 8.6e-27 125.6 86 73.3
PRCOL_00002339 Prasinoderma coloniale HOM05D006137 ORTHO05D007697 4.4e-23 113.2 198 32.8
BcaC09g50780 Brassica carinata HOM05D006137 ORTHO05D007697 1.9e-18 97.8 99 61.6
C02p41610 Brassica napus HOM05D006137 ORTHO05D007697 6.2e-17 92.8 46 87.0
BolC2t10179H Brassica oleracea HOM05D006137 ORTHO05D007697 6.2e-17 92.8 46 87.0
BcaC02g07709 Brassica carinata HOM05D006137 ORTHO05D007697 1.7e-14 84.7 91 62.6
Cre16.g659850 Chlamydomonas reinhardtii HOM05D006137 ORTHO05D007697 2.8e-09 67.4 204 26.0
BolC2t11174H Brassica oleracea HOM05D006137 ORTHO05D007697 1.8e-08 64.7 31 87.1
Mapoly0035s0139 Marchantia polymorpha HOM05D002058 ORTHO05D003758 6.8e-08 62.8 149 33.6
MCO12G135 Micromonas commoda HOM05D002058 ORTHO05D003758 1.2e-07 62.0 170 26.5
SEGI_36463 Sequoiadendron giganteum HOM05D002058 ORTHO05D009216 5.8e-07 59.7 119 34.5
Mapoly0089s0033 Marchantia polymorpha HOM05D002058 ORTHO05D003758 7.6e-07 59.3 315 26.7


User provided reference genes

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