Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 7.3e-256 886.7 445 100.0
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 1.6e-234 815.8 450 92.0
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 1.3e-233 812.8 449 92.0
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 1.9e-232 808.9 451 92.2
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 1.3e-228 796.2 447 90.6
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 4.9e-228 794.3 451 90.2
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 3.3e-224 781.6 474 85.7
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 4.3e-224 781.2 480 84.8
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 1.1e-222 776.5 479 85.2
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 3.5e-218 761.5 412 92.7
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 6.0e-218 760.8 450 86.0
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 3.9e-209 731.5 386 94.3
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 5.3e-198 694.5 474 76.2
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 5.0e-180 634.8 428 74.8
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 5.5e-179 631.3 435 74.7
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 7.2e-179 630.9 435 74.0
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 9.4e-179 630.6 430 74.9
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 9.4e-179 630.6 435 74.5
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 1.6e-178 629.8 410 75.9
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 3.9e-177 625.2 433 73.4
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 5.2e-177 624.8 430 73.7
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 5.2e-177 624.8 419 75.7
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 8.8e-177 624.0 415 75.7
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 2.6e-176 622.5 393 78.6
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 4.4e-176 621.7 415 76.1
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 1.3e-175 620.2 440 73.6
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 1.3e-175 620.2 392 79.3
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 2.2e-175 619.4 408 77.0
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 1.8e-174 616.3 393 77.6
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 3.1e-174 615.5 419 73.7
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 4.1e-174 615.1 421 74.1
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 7.0e-174 614.4 396 77.8
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 7.0e-174 614.4 430 72.6
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 7.0e-174 614.4 435 71.5
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 9.1e-174 614.0 419 75.2
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 9.1e-174 614.0 428 72.4
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.6e-173 613.2 434 72.6
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 2.0e-173 612.8 400 76.8
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 3.5e-173 612.1 393 77.4
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 4.5e-173 611.7 397 76.6
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 1.0e-172 610.5 393 77.1
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 1.0e-172 610.5 437 72.3
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 1.3e-172 610.1 393 76.8
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 1.7e-172 609.8 394 76.9
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 2.9e-172 609.0 427 75.2
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 2.9e-172 609.0 415 74.9
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 5.0e-172 608.2 386 77.5
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 6.5e-172 607.8 434 71.9
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 4.2e-171 605.1 394 76.6
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 3.6e-170 602.1 386 77.5
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 3.6e-170 602.1 428 72.2
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 6.1e-170 601.3 387 77.8
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 1.8e-169 599.7 423 72.3
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 2.3e-169 599.4 410 73.9
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 1.7e-164 583.2 397 74.8
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 8.5e-164 580.9 365 79.2
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 5.5e-163 578.2 372 76.6
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 7.2e-163 577.8 431 70.8
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 9.4e-163 577.4 474 64.3
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 1.2e-162 577.0 395 74.2
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 6.1e-162 574.7 427 69.1
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 5.2e-161 571.6 368 78.0
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 1.5e-160 570.1 394 72.8
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 1.3e-159 567.0 408 71.1
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 1.6e-157 560.1 354 78.2
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 1.5e-155 553.5 377 74.8
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 1.4e-153 547.0 440 66.8
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 3.0e-153 545.8 434 67.3
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 3.0e-153 545.8 530 57.4
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 7.5e-152 541.2 417 67.6
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 1.1e-150 537.3 394 70.1
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.9e-147 526.6 345 78.3
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 2.5e-147 526.2 406 66.3
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 3.3e-147 525.8 416 66.3
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 4.3e-147 525.4 401 65.8
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.8e-145 520.0 443 63.4
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 1.4e-142 510.4 385 66.0
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 5.4e-142 508.4 429 66.2
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 7.8e-141 504.6 401 64.6
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 3.0e-140 502.7 385 68.6
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 3.1e-137 492.7 434 61.8
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 1.5e-136 490.3 391 66.5
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 1.5e-136 490.3 415 64.8
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 4.4e-136 488.8 425 62.8
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 6.4e-135 485.0 412 64.8
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 3.5e-133 479.2 292 81.8
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.9e-131 473.4 401 63.6
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 3.3e-131 472.6 357 69.5
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 4.7e-130 468.8 431 59.6
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 7.8e-125 451.4 386 64.8
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 3.6e-122 442.6 336 69.9
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 5.1e-116 422.2 403 56.1
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 2.9e-111 406.4 398 54.5
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 1.4e-110 404.1 243 82.7
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 2.1e-109 400.2 464 49.1
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 2.1e-101 373.6 257 74.7
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 3.5e-101 372.9 257 74.3
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 1.3e-87 327.8 196 82.7
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 8.2e-82 308.5 208 76.0
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 9.0e-81 305.1 205 75.6
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 2.7e-77 293.5 203 70.9
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 2.2e-74 283.9 240 67.9
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 2.2e-74 283.9 240 67.9
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 2.2e-74 283.9 240 67.9
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 1.1e-73 281.6 224 70.5
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 2.5e-70 270.4 172 79.1
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 1.2e-69 268.1 530 36.4
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 3.6e-69 266.5 243 65.8
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 6.1e-69 265.8 185 70.8
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.1e-67 261.5 185 69.2
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 1.3e-66 258.1 155 81.9
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 2.4e-65 253.8 186 68.8
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 1.7e-63 247.7 346 44.2
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 5.0e-63 246.1 146 82.9
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 8.5e-63 245.4 165 73.9
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 9.4e-62 241.9 183 67.8
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 1.7e-58 231.1 174 67.2
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.7e-55 221.1 124 83.9
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 7.0e-49 199.1 162 63.0
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 8.8e-44 182.2 157 62.4
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 4.9e-42 176.4 130 66.9
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.2e-40 171.8 124 72.6
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 2.0e-35 154.5 139 63.3
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 3.4e-35 153.7 99 81.8
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 4.4e-35 153.3 99 81.8
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 5.7e-35 152.9 105 71.4
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 1.8e-33 147.9 119 64.7
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 1.1e-30 138.7 144 50.7
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.2e-27 128.6 74 77.0
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 2.0e-24 117.9 121 54.5
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 6.0e-24 116.3 73 76.7
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 8.1e-21 105.9 86 59.3
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 5.2e-20 103.2 62 75.8
CARHR128200 Cardamine hirsuta HOM05D005057 ORTHO05D006570 1.3e-18 98.6 64 81.2
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 1.6e-16 91.7 182 39.0
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 7.8e-16 89.4 73 63.0
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 1.9e-14 84.7 161 36.6
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 4.7e-13 80.1 57 66.7
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 5.2e-12 76.6 132 40.2
RcHm_v2.0_Chr5g0010491 Rosa chinensis HOM05D005057 ORTHO05D006570 5.6e-06 56.6 85 40.0


User provided reference genes

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