Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 5.4e-156 554.3 282 100.0
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 1.4e-143 513.1 272 94.9
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 2.4e-143 512.3 282 92.6
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 3.1e-143 511.9 278 92.8
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 3.7e-136 488.4 283 87.3
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 2.4e-135 485.7 283 86.9
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 2.4e-135 485.7 283 86.9
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 1.2e-134 483.4 276 89.5
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 1.2e-134 483.4 276 89.5
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 1.2e-134 483.4 283 86.2
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 2.0e-134 482.6 277 86.6
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 2.6e-134 482.3 272 89.7
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 2.6e-134 482.3 272 89.7
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 5.8e-134 481.1 278 86.7
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 6.7e-130 467.6 240 95.4
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 2.5e-129 465.7 268 85.8
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 2.5e-129 465.7 240 94.6
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 8.2e-128 460.7 240 93.8
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 3.4e-126 455.3 240 92.1
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 6.1e-123 444.5 240 90.4
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 6.1e-123 444.5 280 78.6
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 1.5e-121 439.9 286 76.2
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 1.9e-121 439.5 276 79.7
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 2.5e-121 439.1 286 76.2
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 9.7e-121 437.2 283 76.0
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 1.8e-119 433.0 284 76.4
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.8e-119 433.0 284 76.4
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.8e-119 433.0 284 76.4
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 2.4e-119 432.6 277 78.3
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 6.9e-119 431.0 289 75.4
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 9.0e-119 430.6 275 76.7
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.2e-118 430.3 284 75.7
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 1.2e-118 430.3 256 81.6
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 1.5e-118 429.9 285 75.8
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 2.6e-118 429.1 285 75.1
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 3.4e-118 428.7 282 76.2
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 7.7e-118 427.6 279 77.4
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 7.7e-118 427.6 259 81.9
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 1.7e-117 426.4 259 80.3
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 2.2e-117 426.0 279 77.4
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 2.2e-117 426.0 280 75.4
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 2.2e-117 426.0 263 79.5
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 3.8e-117 425.2 254 81.1
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 8.5e-117 424.1 279 76.7
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 1.9e-116 422.9 264 78.4
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 3.2e-116 422.2 282 74.5
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 4.2e-116 421.8 273 76.2
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 4.2e-116 421.8 285 74.7
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 7.2e-116 421.0 271 78.2
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 1.2e-115 420.2 271 78.2
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 2.1e-115 419.5 285 72.6
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 2.1e-115 419.5 252 81.3
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 2.1e-115 419.5 240 82.9
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 4.6e-115 418.3 255 81.2
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 7.9e-115 417.5 259 77.6
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 1.0e-114 417.2 276 76.4
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 1.8e-114 416.4 283 73.9
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 2.3e-114 416.0 277 76.2
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 2.3e-114 416.0 242 82.6
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 3.0e-114 415.6 246 82.1
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 8.8e-114 414.1 238 81.9
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 8.8e-114 414.1 260 77.7
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 2.0e-113 412.9 283 73.5
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 2.5e-113 412.5 251 78.1
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 7.4e-113 411.0 261 76.2
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 9.7e-113 410.6 277 74.4
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 2.2e-112 409.5 240 80.8
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 3.7e-112 408.7 238 80.3
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 4.8e-112 408.3 273 75.8
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 6.3e-112 407.9 265 74.3
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 1.1e-111 407.1 233 80.7
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 1.4e-111 406.8 238 80.7
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 5.3e-111 404.8 284 72.5
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 1.2e-110 403.7 260 76.2
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.2e-110 403.7 258 74.8
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 2.0e-110 402.9 236 80.5
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 7.7e-110 401.0 234 79.5
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 7.7e-110 401.0 274 71.9
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 1.0e-109 400.6 246 78.5
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 1.7e-109 399.8 249 75.9
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 2.9e-109 399.1 240 78.3
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 9.4e-108 394.0 222 83.8
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 1.2e-107 393.7 293 69.6
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 1.2e-107 393.7 254 74.8
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 2.1e-107 392.9 269 71.0
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 6.1e-107 391.3 287 69.3
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 7.9e-107 391.0 260 75.0
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 1.0e-106 390.6 246 75.6
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 6.7e-106 387.9 283 69.3
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 1.1e-105 387.1 256 72.7
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.5e-105 386.7 284 69.0
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 3.3e-105 385.6 245 75.9
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 5.7e-105 384.8 272 68.8
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 9.7e-105 384.0 258 72.5
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 1.7e-104 383.3 239 74.1
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 2.8e-104 382.5 245 74.3
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 3.7e-104 382.1 405 53.3
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 8.2e-104 380.9 239 74.9
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 1.1e-103 380.6 237 74.3
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 7.0e-103 377.9 235 75.3
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 1.2e-102 377.1 277 68.2
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 3.5e-102 375.6 261 70.5
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 3.5e-102 375.6 235 74.9
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 6.5e-101 371.3 239 74.5
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 9.4e-100 367.5 225 76.4
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 1.0e-98 364.0 223 75.8
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 2.8e-96 355.9 254 67.3
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 1.2e-94 350.5 262 66.0
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 2.9e-93 345.9 281 63.0
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 6.5e-93 344.7 243 69.1
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 1.5e-89 333.6 225 70.7
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 2.2e-88 329.7 241 64.3
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 2.4e-87 326.2 239 65.3
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 7.0e-87 324.7 189 82.0
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 1.6e-86 323.6 277 58.5
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 3.7e-80 302.4 235 61.7
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 2.3e-77 293.1 238 58.4
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 2.3e-77 293.1 214 71.5
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 2.1e-75 286.6 245 59.6
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 8.0e-75 284.6 284 55.6
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 6.8e-74 281.6 224 62.5
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 2.0e-73 280.0 175 76.0
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 6.4e-72 275.0 206 66.5
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 7.3e-68 261.5 234 56.4
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 1.9e-63 246.9 279 49.8
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 7.8e-62 241.5 254 51.2
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 2.3e-58 229.9 168 71.4
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 3.4e-57 226.1 171 60.8
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 9.2e-55 218.0 135 79.3
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 1.6e-54 217.2 245 49.0
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 3.3e-52 209.5 230 45.2
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 6.2e-51 205.3 124 79.8
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 6.0e-46 188.7 106 78.3
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 5.6e-44 182.2 219 43.8
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 9.6e-44 181.4 125 71.2
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 6.8e-42 175.3 221 42.1
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 7.8e-38 161.8 115 71.3
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 5.3e-34 149.1 144 59.7
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 9.0e-34 148.3 87 78.2
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 9.9e-33 144.8 87 72.4
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.7e-32 144.1 164 51.8
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 2.8e-27 126.7 113 64.6
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 8.4e-24 115.2 255 31.4
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 1.2e-22 111.3 97 56.7
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 2.7e-22 110.2 64 75.0
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 4.9e-16 89.4 86 51.2
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 6.0e-14 82.4 159 40.3
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.0e-13 81.6 47 74.5
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 4.8e-11 72.8 71 57.7
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 1.5e-09 67.8 69 58.0
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 1.3e-08 64.7 243 24.7
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 8.4e-08 62.0 225 24.0
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 9.3e-07 58.5 232 23.3
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 1.2e-06 58.2 232 23.7
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.6e-06 57.8 28 89.3
Solyc11g027840.2 Solanum lycopersicum HOM05D003774 ORTHO05D009174 2.1e-06 57.4 232 23.3
Mapoly0091s0038 Marchantia polymorpha HOM05D001214 ORTHO05D001029 4.6e-06 56.2 169 33.1
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 4.6e-06 56.2 203 27.6


User provided reference genes

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