Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 5.2e-40 167.5 102 100.0
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.7e-28 128.6 76 90.8
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.3e-27 126.3 74 91.9
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 2.3e-27 125.6 101 72.3
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 9.5e-26 120.2 96 71.9
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 9.5e-26 120.2 96 71.9
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 9.5e-26 120.2 96 71.9
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 3.6e-25 118.2 96 70.8
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 3.6e-25 118.2 96 70.8
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 5.2e-24 114.4 76 82.9
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 8.9e-24 113.6 69 89.9
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 3.8e-19 98.2 86 66.3
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 5.0e-19 97.8 76 69.7
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 8.6e-19 97.1 75 70.7
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 4.3e-18 94.7 83 67.5
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 1.2e-17 93.2 80 67.5
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 1.6e-17 92.8 91 64.8
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 2.8e-17 92.0 73 69.9
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 2.8e-17 92.0 73 69.9
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 3.6e-17 91.7 73 69.9
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 4.0e-16 88.2 66 74.2
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 6.8e-16 87.4 66 74.2
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 2.0e-15 85.9 72 63.9
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 2.6e-15 85.5 73 68.5
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 2.6e-15 85.5 95 53.7
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 2.6e-15 85.5 90 55.6
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 3.4e-15 85.1 75 62.7
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 7.5e-15 84.0 76 61.8
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.7e-14 82.8 73 65.8
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 1.7e-14 82.8 73 61.6
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.7e-14 82.8 92 51.1
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 2.2e-14 82.4 74 60.8
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 3.7e-14 81.6 73 61.6
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 4.9e-14 81.3 67 67.2
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 4.9e-14 81.3 92 54.3
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 4.9e-14 81.3 74 58.1
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.4e-13 79.7 72 61.1
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 1.8e-13 79.3 73 63.0
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 1.8e-13 79.3 68 66.2
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 1.8e-13 79.3 73 60.3
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 2.4e-13 79.0 76 59.2
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 3.2e-13 78.6 66 68.2
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 3.2e-13 78.6 66 68.2
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 4.1e-13 78.2 75 60.0
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.4e-13 77.8 91 51.6
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 5.4e-13 77.8 76 59.2
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 5.4e-13 77.8 73 63.0
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 7.0e-13 77.4 70 62.9
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 9.2e-13 77.0 76 61.8
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 9.2e-13 77.0 66 65.2
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 1.2e-12 76.6 71 63.4
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.2e-12 76.6 67 67.2
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 1.2e-12 76.6 67 65.7
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.2e-12 76.6 67 65.7
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 1.6e-12 76.3 88 52.3
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 1.6e-12 76.3 67 65.7
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 1.6e-12 76.3 72 61.1
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 1.6e-12 76.3 76 60.5
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 2.0e-12 75.9 73 60.3
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 2.7e-12 75.5 83 61.4
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.7e-12 75.5 90 51.1
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.7e-12 75.5 91 50.5
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 3.5e-12 75.1 66 66.7
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 3.5e-12 75.1 70 60.0
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 3.5e-12 75.1 72 61.1
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 4.6e-12 74.7 71 63.4
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 6.0e-12 74.3 73 61.6
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 6.0e-12 74.3 75 57.3
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 6.0e-12 74.3 71 60.6
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 6.0e-12 74.3 69 59.4
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 7.8e-12 73.9 73 57.5
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 7.8e-12 73.9 73 57.5
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 7.8e-12 73.9 71 60.6
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 7.8e-12 73.9 72 58.3
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 1.0e-11 73.6 68 60.3
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 1.0e-11 73.6 66 65.2
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.0e-11 73.6 66 65.2
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.3e-11 73.2 67 59.7
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.3e-11 73.2 67 59.7
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.3e-11 73.2 94 50.0
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 1.3e-11 73.2 66 63.6
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.7e-11 72.8 72 55.6
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 1.7e-11 72.8 69 62.3
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.7e-11 72.8 67 59.7
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 2.3e-11 72.4 74 54.1
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 2.3e-11 72.4 70 60.0
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.3e-11 72.4 72 56.9
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 3.0e-11 72.0 74 55.4
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 3.0e-11 72.0 72 58.3
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 3.0e-11 72.0 73 57.5
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 3.0e-11 72.0 67 61.2
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 3.0e-11 72.0 73 57.5
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 3.9e-11 71.6 67 59.7
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 3.9e-11 71.6 63 65.1
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 5.0e-11 71.2 67 59.7
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 6.6e-11 70.9 70 61.4
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 6.6e-11 70.9 67 58.2
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.1e-10 70.1 67 59.7
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 1.1e-10 70.1 66 59.1
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 1.1e-10 70.1 74 55.4
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.5e-10 69.7 68 58.8
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 1.5e-10 69.7 67 61.2
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 2.5e-10 68.9 73 54.8
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 2.5e-10 68.9 75 54.7
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 3.3e-10 68.6 86 48.8
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 5.6e-10 67.8 71 53.5
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 7.3e-10 67.4 74 54.1
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.3e-10 67.4 70 61.4
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 7.3e-10 67.4 69 58.0
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 9.5e-10 67.0 68 58.8
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 9.5e-10 67.0 65 61.5
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.2e-09 66.6 69 58.0
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 1.2e-09 66.6 69 58.0
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 2.1e-09 65.9 56 64.3
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.1e-09 65.9 66 59.1
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 2.8e-09 65.5 58 63.8
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 3.6e-09 65.1 56 67.9
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 3.6e-09 65.1 62 54.8
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 3.6e-09 65.1 86 55.8
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 3.6e-09 65.1 65 56.9
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 6.2e-09 64.3 65 55.4
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 8.0e-09 63.9 69 56.5
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 8.0e-09 63.9 75 52.0
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 8.0e-09 63.9 56 66.1
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 8.0e-09 63.9 77 49.4
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 1.4e-08 63.2 65 56.9
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 1.8e-08 62.8 69 58.0
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 2.3e-08 62.4 70 52.9
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.1e-08 62.0 67 55.2
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 3.1e-08 62.0 75 53.3
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 3.1e-08 62.0 85 49.4
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 3.1e-08 62.0 68 57.4
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 1.2e-07 60.1 69 56.5
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.5e-07 59.7 65 60.0
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 2.6e-07 58.9 65 55.4
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 2.6e-07 58.9 67 53.7
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.4e-07 58.5 66 54.5
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.4e-07 58.2 63 57.1
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 5.8e-07 57.8 67 50.7
A10p04340 Brassica napus HOM05D000875 ORTHO05D000684 1.3e-06 56.6 42 69.0
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.3e-06 56.6 67 50.7
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 1.3e-06 56.6 67 50.7
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 1.7e-06 56.2 58 55.2
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 1.7e-06 56.2 66 56.1
HPP92_023456 Vanilla planifolia HOM05D004722 ORTHO05D005453 3.7e-06 55.1 67 49.3
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 4.9e-06 54.7 60 58.3
FAN10G0002 Fragaria x ananassa HOM05D040482 ORTHO05D005453 6.4e-06 54.3 52 55.8


User provided reference genes

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