Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0004s1277 Capsella rubella HOM05D006537 ORTHO05D008186 2.1e-135 485.7 251 100.0
AL4G26710 Arabidopsis lyrata HOM05D006537 ORTHO05D008186 7.5e-133 477.2 249 98.0
AT2G31440 Arabidopsis thaliana HOM05D006537 ORTHO05D008186 2.2e-132 475.7 249 97.6
BcaC01g05952 Brassica carinata HOM05D006537 ORTHO05D008186 6.1e-127 457.6 249 92.4
C03p20710 Brassica napus HOM05D006537 ORTHO05D008186 6.1e-127 457.6 249 92.4
BolC3t14452H Brassica oleracea HOM05D006537 ORTHO05D008186 6.1e-127 457.6 249 92.4
Thhalv10017140m.g Eutrema salsugineum HOM05D006537 ORTHO05D008186 1.4e-126 456.4 249 94.4
Sp4g13920 Schrenkiella parvula HOM05D006537 ORTHO05D008186 1.4e-126 456.4 246 93.5
BraA03t11027Z Brassica rapa HOM05D006537 ORTHO05D008186 1.8e-126 456.1 246 93.1
A03p17600 Brassica napus HOM05D006537 ORTHO05D008186 5.2e-126 454.5 246 92.7
CARHR125090 Cardamine hirsuta HOM05D006537 ORTHO05D008186 8.9e-126 453.8 246 94.7
BcaB01g04045 Brassica carinata HOM05D006537 ORTHO05D008186 1.1e-123 446.8 246 92.7
TWI63G0033 Tripterygium wilfordii HOM05D006537 ORTHO05D008186 1.2e-114 416.8 249 81.1
Aa31LG5G5440 Aethionema arabicum HOM05D006537 ORTHO05D008186 8.6e-113 410.6 249 85.9
MD04G1039500 Malus domestica HOM05D006537 ORTHO05D008186 1.1e-112 410.2 248 78.2
Prupe.1G190300 Prunus persica HOM05D006537 ORTHO05D008186 2.1e-111 406.0 248 77.4
GSVIVG01010746001 Vitis vinifera HOM05D006537 ORTHO05D008186 2.1e-111 406.0 249 77.5
Duzib212G0958 Durio zibethinus HOM05D006537 ORTHO05D008186 4.7e-111 404.8 248 77.4
Haze_01534 Corylus avellana HOM05D006537 ORTHO05D008186 1.8e-110 402.9 248 77.4
Dinv22722 Davidia involucrata HOM05D006537 ORTHO05D008186 1.8e-110 402.9 249 77.1
CiPaw.01G101300 Carya illinoinensis HOM05D006537 ORTHO05D008186 2.3e-110 402.5 245 80.0
Ciclev10021930m.g Citrus clementina HOM05D006537 ORTHO05D008186 3.1e-110 402.1 239 81.6
Thecc.04G185300 Theobroma cacao HOM05D006537 ORTHO05D008186 3.1e-110 402.1 248 76.6
Gohir.A02G015200 Gossypium hirsutum HOM05D006537 ORTHO05D008186 5.2e-110 401.4 245 77.1
FvH4_4g11160 Fragaria vesca HOM05D006537 ORTHO05D008186 6.8e-110 401.0 245 79.2
Potri.007G127400 Populus trichocarpa HOM05D006537 ORTHO05D008186 8.9e-110 400.6 243 79.4
QL10p048350 Quercus lobata HOM05D006537 ORTHO05D008186 2.0e-109 399.4 249 75.9
CSS0005792 Camellia sinensis var. sinensis HOM05D006537 ORTHO05D008186 4.4e-109 398.3 245 77.6
Duzib268G1074 Durio zibethinus HOM05D006537 ORTHO05D008186 4.4e-109 398.3 248 76.6
Atru.chr3.1537 Acer truncatum HOM05D006537 ORTHO05D008186 5.8e-109 397.9 245 78.4
Gohir.D02G016700 Gossypium hirsutum HOM05D006537 ORTHO05D008186 5.8e-109 397.9 245 76.3
Solyc06g073410.3 Solanum lycopersicum HOM05D006537 ORTHO05D008186 3.7e-108 395.2 245 76.7
Sopen06g029790 Solanum pennellii HOM05D006537 ORTHO05D008186 3.7e-108 395.2 245 76.7
Gorai.005G020200 Gossypium raimondii HOM05D006537 ORTHO05D008186 6.4e-108 394.4 245 75.5
PGSC0003DMG400027008 Solanum tuberosum HOM05D006537 ORTHO05D008186 6.4e-108 394.4 245 76.3
AUR62015408 Chenopodium quinoa HOM05D006537 ORTHO05D008186 3.2e-107 392.1 245 77.1
Nitab4.5_0004579g0020 Nicotiana tabacum HOM05D006537 ORTHO05D008186 3.2e-107 392.1 245 75.5
ClCG08G004470 Citrullus lanatus HOM05D006537 ORTHO05D008186 7.1e-107 391.0 245 75.9
Eucgr.A00074 Eucalyptus grandis HOM05D006537 ORTHO05D008186 7.1e-107 391.0 241 76.8
MELO3C011641.2 Cucumis melo HOM05D006537 ORTHO05D008186 9.2e-107 390.6 245 76.3
THA.LOC104826193 Tarenaya hassleriana HOM05D006537 ORTHO05D008186 1.2e-106 390.2 249 80.7
Eucgr.A00271 Eucalyptus grandis HOM05D006537 ORTHO05D008186 2.1e-106 389.4 241 76.8
TAR633G2589 Trochodendron aralioides HOM05D006537 ORTHO05D008186 2.1e-106 389.4 246 75.6
Cc00_g09850 Coffea canephora HOM05D006537 ORTHO05D008186 3.5e-106 388.7 249 75.1
Lj3g0010197 Lotus japonicus HOM05D006537 ORTHO05D008186 6.0e-106 387.9 249 73.1
Peaxi162Scf00375g00618 Petunia axillaris HOM05D006537 ORTHO05D008186 6.0e-106 387.9 245 75.1
PSO732G0008 Papaver somniferum HOM05D006537 ORTHO05D008186 7.8e-106 387.5 249 75.9
CsaV3_6G003840 Cucumis sativus L. HOM05D006537 ORTHO05D008186 1.0e-105 387.1 244 76.2
Ca_20779_v3 Cicer arietinum L. HOM05D006537 ORTHO05D008186 1.7e-105 386.3 241 75.1
Aqoxy2G04100 Aquilegia oxysepala HOM05D006537 ORTHO05D008186 6.6e-105 384.4 249 73.5
CANSAT78G1337 Cannabis sativa HOM05D006537 ORTHO05D008186 6.6e-105 384.4 245 76.3
arahy.Tifrunner.gnm1.ann1.RQ8JR0 Arachis hypogaea HOM05D006537 ORTHO05D008186 8.6e-105 384.0 247 74.5
arahy.Tifrunner.gnm1.ann1.W0CVEC Arachis hypogaea HOM05D006537 ORTHO05D008186 8.6e-105 384.0 247 74.5
Sed0000584 Sechium edule HOM05D006537 ORTHO05D008186 1.1e-104 383.6 252 74.6
PSO675G9308 Papaver somniferum HOM05D006537 ORTHO05D008186 3.3e-104 382.1 249 74.3
Psat7g214000 Pisum sativum HOM05D006537 ORTHO05D008186 7.3e-104 380.9 241 73.9
Actinidia35970 Actinidia chinensis HOM05D006537 ORTHO05D008186 1.2e-103 380.2 245 74.7
Rhsim09G0028500 Rhododendron simsii HOM05D006537 ORTHO05D008186 1.2e-103 380.2 258 72.9
TPR.G34202 Trifolium pratense HOM05D006537 ORTHO05D008186 3.6e-103 378.6 241 73.4
Phvul.011G055200 Phaseolus vulgaris HOM05D006537 ORTHO05D008186 4.7e-103 378.3 241 75.1
EL10Ac3g05587 Beta vulgaris HOM05D006537 ORTHO05D008186 8.1e-103 377.5 264 72.3
VMungo1127G2200 Vigna mungo HOM05D006537 ORTHO05D008186 8.1e-103 377.5 241 75.1
HanXRQChr14g0433111 Helianthus annuus HOM05D006537 ORTHO05D008186 1.4e-102 376.7 243 73.3
Glyma.12G053200 Glycine max HOM05D006537 ORTHO05D008186 2.4e-102 375.9 241 74.3
Oeu011639.1 Olea europaea HOM05D006537 ORTHO05D008186 2.4e-102 375.9 249 72.3
Medtr4g067050 Medicago truncatula HOM05D006537 ORTHO05D008186 3.1e-102 375.6 249 71.5
Glyma.11G128700 Glycine max HOM05D006537 ORTHO05D008186 1.2e-101 373.6 241 74.7
RcHm_v2.0_Chr4g0407291 Rosa chinensis HOM05D006537 ORTHO05D008186 4.4e-101 371.7 245 74.7
SGA_v2.0_scaffold74G24571 Striga asiatica HOM05D006537 ORTHO05D008186 5.8e-101 371.3 245 71.4
Actinidia34608 Actinidia chinensis HOM05D006537 ORTHO05D008186 7.6e-101 370.9 245 73.9
Lalb_Chr01g0003221 Lupinus albus HOM05D006537 ORTHO05D008186 2.9e-100 369.0 249 71.9
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 4.2e-99 365.2 242 70.7
CDE04G1858 Ceratophyllum demersum HOM05D006537 ORTHO05D008186 3.5e-98 362.1 244 69.3
ECA238G3138 Erigeron canadensis HOM05D000961 ORTHO05D000001 1.0e-97 360.5 234 74.4
Migut.C00288 Erythranthe guttata HOM05D006537 ORTHO05D008186 1.0e-97 360.5 245 71.0
A10p04320 Brassica napus HOM05D006537 ORTHO05D008186 3.9e-97 358.6 195 89.2
Lsat_1_v5_gn_2_34721 Lactuca sativa HOM05D006537 ORTHO05D008186 1.6e-95 353.2 243 70.0
Nn1g09574 Nelumbo nucifera HOM05D006537 ORTHO05D008186 2.1e-95 352.8 245 71.0
Manes.04G042325 Manihot esculenta HOM05D006537 ORTHO05D008186 2.0e-93 346.3 203 83.3
CAN.G65.183 Capsicum annuum HOM05D006537 ORTHO05D008186 5.8e-93 344.7 245 69.0
COL.COLO4_24411 Corchorus olitorius HOM05D006537 ORTHO05D008186 6.4e-92 341.3 203 80.8
Zm00001eb237480 Zea mays HOM05D006537 ORTHO05D008186 2.4e-91 339.3 249 65.9
Nitab4.5_0003132g0110 Nicotiana tabacum HOM05D006537 ORTHO05D008186 1.6e-90 336.7 217 75.1
SEGI_14947 Sequoiadendron giganteum HOM05D006537 ORTHO05D008186 2.1e-90 336.3 239 67.4
HPP92_005584 Vanilla planifolia HOM05D006537 ORTHO05D008186 4.6e-90 335.1 242 66.9
HPP92_005589 Vanilla planifolia HOM05D006537 ORTHO05D008186 6.0e-90 334.7 242 66.9
vmacro22675 Vaccinium macrocarpon HOM05D006537 ORTHO05D008186 3.0e-89 332.4 203 76.8
ATR0686G132 Amborella trichopoda HOM05D006537 ORTHO05D008186 1.1e-88 330.5 245 65.7
Sabra07G0103400 Salix brachista HOM05D006537 ORTHO05D008186 1.1e-88 330.5 213 76.1
Os02g0272600 Oryza sativa ssp. japonica HOM05D006537 ORTHO05D008186 3.3e-88 328.9 249 64.3
Sc25g0002980 Simmondsia chinensis HOM05D006537 ORTHO05D008186 2.8e-87 325.9 245 65.7
Dinv44198 Davidia involucrata HOM05D006537 ORTHO05D008186 7.6e-85 317.8 184 83.2
AUR62002287 Chenopodium quinoa HOM05D006537 ORTHO05D008186 1.3e-84 317.0 198 73.2
Cpa.g.sc409.1 Carica papaya HOM05D006537 ORTHO05D008186 4.6e-82 308.5 202 74.8
PGR083G1737 Punica granatum HOM05D006537 ORTHO05D008186 3.0e-81 305.8 249 61.4
Hund03149 Selenicereus undatus HOM05D006537 ORTHO05D008186 3.5e-74 282.3 259 61.4
MSTRG.24999 Avicennia marina HOM05D006537 ORTHO05D008186 3.0e-73 279.3 247 59.5
BraA10t42709Z Brassica rapa HOM05D006537 ORTHO05D008186 3.0e-73 279.3 157 89.2
Lj6A56G22 Lonicera japonica HOM05D006537 ORTHO05D008186 6.7e-73 278.1 249 58.2
AagrBONN_evm.TU.Sc2ySwM_344.2170 Anthoceros agrestis HOM05D006537 ORTHO05D008186 2.4e-70 269.6 238 55.0
Mapoly0042s0024 Marchantia polymorpha HOM05D006537 ORTHO05D008186 6.1e-66 255.0 249 51.0
SMO174G0097 Selaginella moellendorffii HOM05D006537 ORTHO05D008186 2.2e-63 246.5 238 53.8
Pp3c14_4280 Physcomitrium patens HOM05D006537 ORTHO05D008186 3.1e-62 242.7 244 49.6
FAN07G2858 Fragaria x ananassa HOM05D006537 ORTHO05D008186 1.9e-59 233.4 202 62.9
Pp3c10_5780 Physcomitrium patens HOM05D006537 ORTHO05D008186 2.5e-59 233.0 237 47.7
SHI21233 Sapria himalayana HOM05D006537 ORTHO05D008186 1.0e-49 201.1 159 61.0
PSO675G6606 Papaver somniferum HOM05D006537 ORTHO05D008186 2.3e-49 199.9 152 63.2
PSO675G1145 Papaver somniferum HOM05D006537 ORTHO05D008186 3.0e-49 199.5 159 62.3
PSO229G0026 Papaver somniferum HOM05D006537 ORTHO05D008186 2.0e-48 196.8 152 62.5
PSO832G3398 Papaver somniferum HOM05D006537 ORTHO05D008186 6.3e-47 191.8 120 76.7
SalBow7G4202 Salvia bowleyana HOM05D006537 ORTHO05D008186 3.1e-46 189.5 116 72.4
PSO017G0422 Papaver somniferum HOM05D006537 ORTHO05D008186 9.1e-46 188.0 128 73.4
A10p04420 Brassica napus HOM05D006537 ORTHO05D008186 6.7e-41 171.8 94 90.4
DCAR_022903 Daucus carota HOM05D006537 ORTHO05D008186 1.0e-36 157.9 119 64.7
BraA10t42699Z Brassica rapa HOM05D006537 ORTHO05D008186 1.7e-36 157.1 95 84.2
Cre13.g576300 Chlamydomonas reinhardtii HOM05D006537 ORTHO05D008186 6.5e-36 155.2 231 39.0
Lj6P622T45 Lonicera japonica HOM05D006537 ORTHO05D008186 1.4e-30 137.5 91 69.2
CBR_g29804 Chara braunii HOM05D006537 ORTHO05D008186 1.2e-16 91.3 71 59.2
vmacro00700 Vaccinium macrocarpon HOM05D006537 ORTHO05D008186 4.4e-16 89.4 166 38.0
Cpa.g.c46401 Carica papaya HOM05D006537 ORTHO05D008186 1.7e-07 60.8 42 57.1
Sopen06g005930 Solanum pennellii HOM05D006537 ORTHO05D008186 2.9e-07 60.1 38 81.6


User provided reference genes

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