Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 2.0e-178 629.0 323 100.0
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 4.9e-161 571.2 323 89.2
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.2e-160 568.5 324 88.6
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 3.5e-151 538.5 317 86.1
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 2.5e-149 532.3 318 86.2
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 1.3e-148 530.0 310 86.8
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 6.2e-148 527.7 310 86.1
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.8e-147 526.2 317 86.4
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 6.9e-147 524.2 310 85.5
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 1.4e-144 516.5 328 81.4
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 1.6e-143 513.1 309 85.1
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 1.0e-134 483.8 309 79.0
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 2.9e-129 465.7 318 77.4
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 5.3e-123 444.9 320 70.9
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 3.9e-118 428.7 293 73.7
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.5e-117 426.8 243 82.7
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 2.0e-117 426.4 243 81.5
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.6e-117 426.0 274 77.0
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.6e-117 426.0 274 77.0
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.7e-117 424.9 242 82.6
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.7e-117 424.9 243 82.3
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 7.4e-117 424.5 274 76.6
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 9.7e-117 424.1 257 77.8
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 9.7e-117 424.1 244 80.7
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 2.8e-116 422.5 243 81.5
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 2.8e-116 422.5 243 81.5
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 4.8e-116 421.8 255 78.0
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 6.3e-116 421.4 297 69.7
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 6.3e-116 421.4 245 80.4
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 1.4e-115 420.2 270 75.6
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.8e-115 419.9 321 68.2
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 1.8e-115 419.9 289 70.6
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 3.1e-115 419.1 286 72.7
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 3.1e-115 419.1 250 78.8
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 4.1e-115 418.7 250 78.4
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 5.3e-115 418.3 278 73.0
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 5.3e-115 418.3 335 63.6
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 9.1e-115 417.5 303 68.3
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.5e-114 416.8 293 71.3
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 1.5e-114 416.8 331 64.7
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 2.0e-114 416.4 240 81.2
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 2.0e-114 416.4 246 78.0
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 3.4e-114 415.6 256 76.2
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 3.4e-114 415.6 318 66.0
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 4.5e-114 415.2 245 79.2
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 4.5e-114 415.2 252 75.8
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 4.5e-114 415.2 251 76.9
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 1.0e-113 414.1 245 77.6
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.3e-113 413.7 249 77.5
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.7e-113 413.3 242 79.8
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.9e-113 412.5 260 74.2
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 2.9e-113 412.5 253 75.9
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 6.5e-113 411.4 252 75.8
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 2.5e-112 409.5 287 69.7
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 2.5e-112 409.5 245 77.1
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 2.5e-112 409.5 314 65.3
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 4.2e-112 408.7 318 65.1
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 4.2e-112 408.7 250 75.6
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 4.2e-112 408.7 282 70.2
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 9.4e-112 407.5 313 66.1
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 9.4e-112 407.5 311 67.8
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 1.6e-111 406.8 322 65.8
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 1.6e-111 406.8 290 66.9
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 2.1e-111 406.4 250 76.4
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 2.1e-111 406.4 247 76.9
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 7.9e-111 404.4 256 74.2
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.0e-110 404.1 261 75.5
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.4e-110 403.7 254 73.6
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 1.8e-110 403.3 269 71.7
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 1.8e-110 403.3 245 77.1
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 2.3e-110 402.9 245 74.7
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 1.1e-109 400.6 278 69.4
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.5e-109 400.2 256 72.3
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 1.5e-109 400.2 291 68.0
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 2.0e-109 399.8 292 68.5
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 2.6e-109 399.4 254 73.2
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 9.7e-109 397.5 256 72.7
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 3.7e-108 395.6 275 67.6
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.4e-107 393.7 245 74.3
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.8e-107 393.3 254 71.7
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 2.6e-106 389.4 311 60.5
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 5.9e-106 388.3 248 71.8
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 3.8e-105 385.6 247 71.7
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 5.0e-105 385.2 217 82.0
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 5.0e-105 385.2 302 63.9
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 5.0e-105 385.2 244 72.5
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 1.1e-104 384.0 288 64.9
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 5.5e-104 381.7 247 71.3
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 6.7e-102 374.8 288 63.9
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 8.8e-102 374.4 250 70.8
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 2.6e-101 372.9 277 63.2
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 4.4e-101 372.1 278 65.8
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 1.7e-100 370.2 236 76.7
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 2.8e-100 369.4 213 80.3
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 4.8e-100 368.6 258 68.6
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 4.1e-99 365.5 258 70.5
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 2.0e-98 363.2 398 51.0
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 3.5e-98 362.5 307 59.6
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 1.7e-97 360.1 279 65.9
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 6.8e-94 348.2 244 68.9
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 3.4e-93 345.9 352 53.7
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 2.2e-92 343.2 397 48.6
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 7.0e-91 338.2 252 68.3
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 1.3e-89 334.0 321 57.3
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 1.3e-89 334.0 248 64.5
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 9.5e-88 327.8 310 53.2
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 4.7e-87 325.5 215 72.6
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.5e-85 320.5 265 61.1
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.7e-84 317.0 265 55.8
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 4.1e-83 312.4 270 62.6
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.7e-79 298.9 231 65.8
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 6.4e-76 288.5 224 68.8
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 7.0e-75 285.0 259 51.4
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 5.0e-73 278.9 215 60.0
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.9e-72 276.9 167 76.6
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 1.9e-67 260.4 179 70.4
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 1.7e-65 253.8 167 71.3
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 3.3e-64 249.6 251 50.6
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 5.6e-64 248.8 264 45.8
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 3.6e-63 246.1 159 72.3
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 9.9e-61 238.0 143 77.6
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 1.4e-59 234.2 253 44.7
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.6e-55 220.7 206 56.8
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.1e-55 220.3 137 78.1
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 3.6e-55 219.5 191 58.6
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.1e-54 216.5 119 86.6
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 5.8e-53 212.2 258 48.4
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.9e-51 207.2 137 70.1
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 4.1e-51 206.1 136 75.7
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 4.1e-51 206.1 136 75.7
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 2.1e-50 203.8 238 45.4
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 2.1e-50 203.8 133 71.4
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 4.3e-48 196.1 153 65.4
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 2.1e-47 193.7 167 56.3
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 8.1e-47 191.8 128 71.9
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 1.4e-46 191.0 164 62.8
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 4.0e-46 189.5 112 75.0
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 5.8e-45 185.7 110 79.1
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.4e-43 181.0 99 80.8
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 2.4e-43 180.3 176 54.5
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 8.1e-39 165.2 239 37.2
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 5.8e-37 159.1 252 35.7
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 9.9e-37 158.3 95 74.7
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 4.2e-35 152.9 164 51.2
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 3.0e-33 146.7 220 38.2
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 3.9e-33 146.4 82 78.0
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 4.8e-31 139.4 79 77.2
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 2.2e-28 130.6 76 75.0
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 3.8e-28 129.8 144 53.5
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 2.7e-26 123.6 76 68.4
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 3.5e-26 123.2 88 70.5
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 3.0e-25 120.2 69 72.5
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 9.0e-22 108.6 63 74.6
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 1.7e-20 104.4 65 78.5
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.7e-20 104.4 56 76.8
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 6.5e-20 102.4 106 54.7
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.4e-19 101.3 247 27.9
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 1.5e-16 91.3 50 80.0
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 4.8e-15 86.3 48 77.1
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 8.2e-15 85.5 88 53.4
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 3.8e-12 76.6 45 77.8
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.0e-12 76.3 142 33.8
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.9e-11 74.3 59 47.5
CARHR124880 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.8e-09 67.8 88 54.5
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 3.3e-08 63.5 102 34.3


User provided reference genes

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