Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 5.7e-273 943.7 505 100.0
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 6.5e-261 903.7 505 95.4
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 5.5e-260 900.6 505 95.0
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 4.4e-257 891.0 505 94.3
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 6.8e-250 867.1 505 91.7
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 8.3e-248 860.1 505 91.1
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 8.0e-243 843.6 508 89.2
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 2.0e-241 839.0 507 88.8
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 1.6e-235 819.3 505 86.9
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 1.6e-235 819.3 505 86.9
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 3.7e-232 808.1 507 85.8
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 5.4e-231 804.3 497 86.7
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 9.5e-228 793.5 514 84.2
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 4.6e-206 721.5 510 78.6
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 4.8e-195 684.9 508 74.2
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 5.8e-193 677.9 507 74.2
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 3.8e-192 675.2 510 72.7
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 6.0e-190 667.9 509 72.7
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 2.5e-188 662.5 492 73.0
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 9.6e-188 660.6 507 71.8
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.4e-186 656.8 509 71.3
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.4e-186 656.8 509 71.5
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.8e-186 656.4 476 75.0
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 2.0e-185 652.9 510 70.6
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 7.6e-185 651.0 476 74.4
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 8.4e-184 647.5 508 70.9
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 4.2e-183 645.2 489 72.6
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 4.2e-183 645.2 510 69.6
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 5.5e-183 644.8 476 73.7
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 5.5e-183 644.8 510 71.8
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.2e-182 643.7 495 71.5
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 1.6e-182 643.3 491 71.3
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 1.3e-181 640.2 508 70.3
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 2.3e-181 639.4 502 72.1
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 3.9e-181 638.6 504 71.4
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 8.7e-181 637.5 501 71.7
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 8.7e-181 637.5 511 69.9
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.5e-180 636.0 501 70.1
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 2.5e-180 636.0 510 69.8
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 2.5e-180 636.0 486 71.4
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 3.3e-180 635.6 501 70.1
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 2.1e-179 632.9 505 69.3
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 2.1e-179 632.9 498 71.5
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 6.3e-179 631.3 508 68.7
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.3e-179 631.3 472 73.5
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 8.2e-179 630.9 492 71.3
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 1.1e-178 630.6 500 70.0
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 9.0e-178 627.5 488 69.5
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 1.2e-177 627.1 472 73.1
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 1.5e-177 626.7 506 71.3
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 2.0e-177 626.3 509 68.6
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 2.0e-177 626.3 509 68.2
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 2.6e-177 625.9 500 69.6
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 4.5e-177 625.2 500 69.6
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 2.2e-176 622.9 507 67.1
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 1.1e-175 620.5 485 70.3
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 3.2e-175 619.0 502 70.5
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 9.3e-175 617.5 508 67.3
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 1.6e-174 616.7 506 69.2
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 2.3e-173 612.8 493 69.2
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.0e-173 612.5 518 66.0
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 5.1e-173 611.7 494 69.6
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 8.7e-173 610.9 483 70.4
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 2.5e-172 609.4 494 69.2
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 9.7e-172 607.4 531 65.7
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 1.3e-171 607.1 509 67.8
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 6.3e-171 604.7 508 68.1
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.3e-171 604.7 497 67.2
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 1.1e-170 604.0 502 67.9
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.8e-170 603.2 508 68.3
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 7.7e-169 597.8 489 68.5
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 2.9e-168 595.9 506 67.4
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.9e-167 593.2 505 65.9
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 2.5e-167 592.8 497 66.8
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 4.2e-167 592.0 519 64.7
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 5.5e-167 591.7 500 66.6
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 9.4e-167 590.9 510 67.1
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 9.4e-167 590.9 512 65.8
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 1.6e-166 590.1 500 66.2
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 7.9e-166 587.8 476 68.9
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 1.4e-165 587.0 488 66.6
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.4e-165 587.0 505 65.1
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 1.8e-165 586.6 490 67.1
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 5.7e-164 581.6 504 66.5
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 1.3e-163 580.5 507 64.1
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 9.1e-162 574.3 499 70.5
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 1.0e-160 570.9 511 65.0
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 2.2e-160 569.7 421 74.3
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 5.0e-160 568.5 473 67.0
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 1.9e-159 566.6 490 66.1
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.9e-159 566.6 491 64.0
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 4.2e-159 565.5 493 64.7
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 1.6e-158 563.5 488 65.0
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 3.6e-158 562.4 488 67.0
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 6.1e-158 561.6 491 64.0
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 3.9e-157 558.9 504 62.7
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 5.1e-157 558.5 512 62.9
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 5.7e-156 555.1 512 63.1
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 5.7e-156 555.1 512 63.3
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 9.7e-156 554.3 511 62.6
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.8e-152 542.3 510 62.2
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 1.1e-151 540.8 448 67.9
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.6e-150 537.0 381 76.4
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 3.6e-150 535.8 508 61.2
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 4.8e-147 525.4 358 77.4
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 1.4e-146 523.9 391 79.0
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 1.4e-146 523.9 391 79.0
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 4.2e-143 512.3 448 65.6
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 2.9e-136 489.6 540 56.5
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 2.5e-135 486.5 487 57.9
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 4.2e-135 485.7 492 58.3
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 1.8e-130 470.3 475 57.9
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 3.4e-124 449.5 503 53.1
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 6.4e-123 445.3 480 58.1
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.3e-120 436.8 394 66.2
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.5e-119 434.1 447 59.3
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 4.9e-115 419.1 386 58.3
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 6.0e-113 412.1 397 60.2
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 1.0e-104 384.8 382 61.3
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 3.1e-93 346.7 207 83.1
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.1e-89 334.0 221 81.9
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 1.9e-82 310.8 413 46.7
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 2.4e-82 310.5 427 47.5
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 2.4e-82 310.5 324 52.5
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 7.1e-82 308.9 253 69.6
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.5e-79 301.2 434 43.8
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.8e-78 296.2 220 71.8
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 4.9e-75 286.2 286 63.3
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 4.2e-74 283.1 390 45.6
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 3.2e-58 230.3 202 66.3
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 5.1e-56 223.0 276 49.6
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.2e-54 217.6 350 40.9
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 3.6e-49 200.3 382 36.4
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 7.4e-47 192.6 327 38.5
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.4e-45 188.3 145 73.8
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.5e-44 184.9 231 50.2
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.4e-39 166.8 97 82.5
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 2.0e-36 157.9 93 82.8
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.7e-33 146.7 107 62.6
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.3e-30 138.7 88 77.3
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 6.3e-30 136.3 138 60.1
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 2.6e-23 114.4 123 55.3
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 6.3e-22 109.8 70 91.4
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 1.1e-21 109.0 185 41.1
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.0e-11 75.9 58 67.2
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.0e-11 75.9 58 67.2
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 9.5e-10 69.3 58 62.1
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 3.6e-09 67.4 59 66.1
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 1.2e-07 62.4 50 70.0
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.0e-07 61.6 93 36.6
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 4.4e-07 60.5 44 68.2
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 5.7e-07 60.1 72 48.6


User provided reference genes

Program Settings