Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 4.2e-57 224.6 119 100.0
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 2.2e-42 175.6 118 81.4
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 4.2e-41 171.4 117 79.5
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 5.4e-41 171.0 117 80.3
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 2.1e-40 169.1 117 79.5
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 3.5e-40 168.3 117 76.9
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 3.5e-40 168.3 117 76.9
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 7.9e-40 167.2 117 76.9
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 1.8e-39 166.0 117 76.9
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 1.8e-39 166.0 117 76.9
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 2.3e-39 165.6 117 76.1
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 2.3e-39 165.6 117 76.1
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 2.3e-39 165.6 117 76.1
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 2.3e-39 165.6 120 77.5
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 5.1e-39 164.5 117 76.1
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 3.3e-38 161.8 117 75.2
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 1.4e-33 146.4 107 75.7
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 2.7e-32 142.1 110 70.0
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 1.5e-22 109.8 118 52.5
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 1.1e-20 103.6 116 52.6
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 9.0e-20 100.5 110 53.6
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 9.0e-20 100.5 119 56.3
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 1.2e-19 100.1 114 51.8
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 5.9e-19 97.8 109 49.5
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 1.0e-18 97.1 109 49.5
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.0e-18 97.1 112 54.5
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 2.9e-18 95.5 107 50.5
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 5.0e-18 94.7 118 50.0
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 5.0e-18 94.7 108 55.6
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 6.5e-18 94.4 112 50.0
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 8.5e-18 94.0 113 49.6
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 1.1e-17 93.6 115 53.9
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 1.4e-17 93.2 119 48.7
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.4e-17 93.2 113 49.6
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 2.5e-17 92.4 113 47.8
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 2.5e-17 92.4 113 49.6
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.2e-17 92.0 111 54.1
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 4.2e-17 91.7 109 45.9
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 4.2e-17 91.7 107 49.5
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 4.2e-17 91.7 111 48.6
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 5.5e-17 91.3 116 46.6
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 5.5e-17 91.3 116 46.6
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 5.5e-17 91.3 110 48.2
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 7.2e-17 90.9 116 47.4
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 9.4e-17 90.5 116 46.6
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.2e-16 90.1 116 46.6
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 2.1e-16 89.4 112 50.0
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 4.6e-16 88.2 107 48.6
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 6.1e-16 87.8 118 49.2
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 6.1e-16 87.8 111 48.6
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 6.1e-16 87.8 112 47.3
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 1.0e-15 87.0 109 45.9
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.4e-15 86.7 113 49.6
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.4e-15 86.7 119 47.1
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 3.0e-15 85.5 111 46.8
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.0e-15 85.5 113 48.7
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 3.0e-15 85.5 109 44.0
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 3.9e-15 85.1 118 47.5
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 5.1e-15 84.7 108 44.4
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 8.8e-15 84.0 116 44.0
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 1.5e-14 83.2 116 44.8
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 1.5e-14 83.2 114 45.6
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 2.5e-14 82.4 118 45.8
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.5e-14 82.4 113 47.8
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 3.3e-14 82.0 112 42.9
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 3.3e-14 82.0 109 45.0
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 3.3e-14 82.0 110 42.7
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 3.3e-14 82.0 116 46.6
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 7.4e-14 80.9 110 47.3
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.7e-14 80.5 117 45.3
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 1.3e-13 80.1 112 47.3
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.3e-13 80.1 113 48.7
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 2.2e-13 79.3 115 43.5
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 2.2e-13 79.3 111 48.6
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 4.8e-13 78.2 116 43.1
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 4.8e-13 78.2 118 47.5
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 4.8e-13 78.2 111 47.7
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 4.8e-13 78.2 116 43.1
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 8.2e-13 77.4 113 46.9
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 8.2e-13 77.4 116 46.6
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 1.4e-12 76.6 111 44.1
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.8e-12 76.3 115 46.1
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 3.1e-12 75.5 118 44.1
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 3.1e-12 75.5 109 43.1
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 3.1e-12 75.5 110 43.6
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 6.9e-12 74.3 115 47.0
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 9.1e-12 73.9 112 49.1
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 9.1e-12 73.9 110 46.4
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 1.2e-11 73.6 111 43.2
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 1.2e-11 73.6 114 40.4
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.0e-11 72.8 118 39.8
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 3.4e-11 72.0 106 40.6
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.4e-11 72.0 103 44.7
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 5.9e-11 71.2 117 41.0
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.0e-10 70.5 118 42.4
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 1.0e-10 70.5 118 41.5
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 1.0e-10 70.5 118 41.5
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.3e-10 70.1 110 42.7
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 1.3e-10 70.1 110 40.9
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 1.3e-10 70.1 118 42.4
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.7e-10 69.7 111 43.2
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 1.7e-10 69.7 122 42.6
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 1.7e-10 69.7 110 40.9
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 2.2e-10 69.3 128 41.4
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 3.8e-10 68.6 110 43.6
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 3.8e-10 68.6 110 40.9
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 6.5e-10 67.8 110 40.9
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 6.5e-10 67.8 118 38.1
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 3.2e-09 65.5 120 37.5
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 3.2e-09 65.5 111 41.4
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 9.4e-09 63.9 111 40.5
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 6.1e-08 61.2 121 38.8
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 7.9e-08 60.8 119 41.2
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 3.0e-07 58.9 118 38.1
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 2.6e-06 55.8 108 35.2


User provided reference genes

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