Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 0.0e+00 1320.8 707 100.0
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 0.0e+00 1075.8 707 83.9
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 1.4e-309 1065.8 710 82.7
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 4.0e-248 861.7 711 68.1
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 1.1e-229 800.4 716 65.9
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 2.4e-229 799.3 716 65.6
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 2.4e-229 799.3 716 65.6
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 1.0e-227 793.9 717 65.7
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 1.9e-226 789.6 718 66.0
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 2.5e-226 789.3 718 65.7
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 2.8e-225 785.8 724 65.6
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 2.1e-220 769.6 712 63.6
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 8.1e-217 757.7 722 63.9
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 1.5e-215 753.4 720 63.8
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 2.8e-209 732.6 754 57.3
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 1.4e-208 730.3 716 61.0
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 1.3e-203 713.8 583 69.3
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 4.4e-162 575.9 707 50.6
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 2.2e-161 573.5 493 67.5
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 9.8e-146 521.5 311 82.6
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 1.5e-125 454.5 351 62.7
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 1.5e-125 454.5 659 43.9
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 1.1e-123 448.4 775 40.4
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 1.5e-122 444.5 401 58.9
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 2.9e-121 440.3 344 62.2
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 6.4e-121 439.1 769 39.7
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 8.3e-121 438.7 385 57.7
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 1.4e-120 438.0 425 54.1
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 4.1e-120 436.4 635 43.6
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 7.0e-120 435.6 766 39.3
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 2.1e-119 434.1 630 42.5
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 4.6e-119 433.0 657 42.9
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 3.9e-118 429.9 323 70.0
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 8.6e-118 428.7 518 46.5
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 8.6e-118 428.7 644 42.2
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 2.1e-116 424.1 433 51.5
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 2.1e-116 424.1 746 38.6
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 3.6e-116 423.3 720 39.9
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 4.7e-116 422.9 355 59.2
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 6.2e-116 422.5 433 51.3
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 6.2e-116 422.5 425 52.5
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 1.4e-115 421.4 669 40.5
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 5.2e-115 419.5 433 51.5
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 8.9e-115 418.7 419 53.2
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 2.0e-114 417.5 360 58.3
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 2.6e-114 417.2 360 58.1
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 2.6e-114 417.2 401 55.1
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 4.4e-114 416.4 344 58.4
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 1.7e-113 414.5 707 39.2
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 2.9e-113 413.7 383 57.4
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 4.1e-112 409.8 344 57.3
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 4.1e-112 409.8 418 52.6
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 1.6e-111 407.9 404 53.0
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 4.6e-111 406.4 726 39.3
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 3.9e-110 403.3 342 59.6
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 6.6e-110 402.5 353 58.1
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 6.6e-110 402.5 344 59.6
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 1.1e-109 401.7 368 54.9
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 1.9e-109 401.0 471 48.6
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 1.9e-109 401.0 722 38.9
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 1.9e-109 401.0 343 59.2
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 2.5e-109 400.6 391 52.9
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 3.3e-109 400.2 643 41.4
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 2.8e-108 397.1 342 57.6
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 1.4e-107 394.8 343 58.3
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 1.2e-106 391.7 364 54.7
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 1.5e-106 391.3 708 38.4
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 1.5e-106 391.3 420 50.5
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 2.6e-106 390.6 345 56.8
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 5.8e-106 389.4 342 58.2
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 1.7e-105 387.9 343 57.1
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 3.8e-105 386.7 333 58.9
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 4.9e-105 386.3 392 51.8
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 8.4e-105 385.6 344 56.1
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 1.9e-104 384.4 419 51.1
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 1.9e-104 384.4 470 47.0
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 3.2e-104 383.6 408 52.0
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 4.2e-104 383.3 438 49.3
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 1.6e-103 381.3 344 56.1
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 1.6e-103 381.3 327 55.4
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 2.7e-103 380.6 342 55.0
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 4.6e-103 379.8 399 49.6
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 1.0e-102 378.6 364 54.7
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 1.7e-102 377.9 344 55.5
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 2.3e-102 377.5 344 54.7
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 2.3e-102 377.5 373 53.1
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 1.1e-101 375.2 325 58.8
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 1.1e-101 375.2 369 52.0
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 2.8e-100 370.5 720 37.4
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 3.6e-100 370.2 389 51.7
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 4.7e-100 369.8 389 51.7
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 4.4e-98 363.2 381 52.5
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 9.9e-98 362.1 334 54.5
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 8.4e-97 359.0 740 36.2
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 1.1e-96 358.6 460 45.2
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 7.1e-96 355.9 742 34.9
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 6.0e-95 352.8 456 46.1
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 1.1e-91 342.0 307 55.4
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 4.0e-91 340.1 401 44.9
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 2.0e-90 337.8 764 36.6
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 3.4e-90 337.0 334 53.0
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 4.5e-90 336.7 408 45.1
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.1e-88 332.0 341 52.8
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 2.5e-85 320.9 720 33.8
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 7.4e-85 319.3 315 53.0
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 1.6e-84 318.2 709 33.4
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 3.4e-82 310.5 709 33.3
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 2.8e-76 290.8 239 62.3
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 8.2e-68 262.7 270 51.9
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 5.5e-64 250.0 208 61.1
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 1.0e-62 245.7 326 42.3
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 6.9e-59 233.0 432 35.0
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 2.6e-58 231.1 207 55.6
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 1.9e-56 224.9 255 42.4
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 3.3e-53 214.2 298 40.6
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 9.4e-48 196.1 323 37.5
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 1.0e-46 192.6 534 32.8
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 2.0e-34 151.8 206 43.2
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.9e-32 145.2 113 60.2
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 6.8e-30 136.7 117 57.3
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 9.8e-29 132.9 151 45.7
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 2.4e-27 128.3 402 30.8
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 2.0e-26 125.2 127 52.0
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 1.0e-22 112.8 126 44.4
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 3.0e-22 111.3 84 60.7
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 2.0e-21 108.6 162 33.3
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 1.8e-19 102.1 140 40.0
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 6.8e-14 83.6 180 27.2
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 1.5e-13 82.4 76 48.7
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 7.5e-13 80.1 62 54.8
C07p28110 Brassica napus HOM05D008189 ORTHO05D031905 3.7e-12 77.8 72 54.2
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 1.3e-09 69.3 55 58.2
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 1.3e-09 69.3 55 58.2
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 1.9e-08 65.5 55 56.4


User provided reference genes

Program Settings