Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 2.3e-125 452.2 228 100.0
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 3.4e-108 395.2 233 84.5
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 7.1e-106 387.5 224 86.6
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 1.2e-105 386.7 227 85.0
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 1.5e-103 379.8 227 83.7
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 1.3e-102 376.7 228 82.0
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 4.8e-102 374.8 223 83.0
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 1.4e-101 373.2 232 80.6
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 2.4e-101 372.5 225 81.8
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 5.3e-101 371.3 227 81.5
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 9.0e-101 370.5 224 82.6
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 3.4e-100 368.6 227 81.5
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 7.6e-100 367.5 227 81.1
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 3.7e-94 348.6 243 71.2
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.7e-91 339.7 242 72.3
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 4.8e-86 321.6 242 67.8
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 6.5e-83 311.2 230 67.0
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.4e-82 310.1 236 65.3
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.9e-82 309.7 230 66.5
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 2.5e-82 309.3 242 63.2
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.2e-82 308.5 230 66.1
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.6e-81 306.6 209 69.4
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 1.6e-81 306.6 253 61.7
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 1.6e-81 306.6 246 62.2
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 4.6e-81 305.1 248 62.5
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 6.1e-81 304.7 234 64.1
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 1.0e-80 303.9 238 62.2
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 1.0e-80 303.9 246 63.0
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.3e-80 303.5 232 62.5
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 3.0e-80 302.4 228 64.5
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 3.0e-80 302.4 241 64.3
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 3.0e-80 302.4 251 60.6
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 3.9e-80 302.0 251 59.4
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 5.1e-80 301.6 231 63.2
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 6.7e-80 301.2 250 62.8
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 8.7e-80 300.8 243 63.8
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.1e-79 300.4 255 60.4
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 1.1e-79 300.4 250 62.8
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 1.5e-79 300.1 254 59.1
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 1.5e-79 300.1 238 61.3
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 1.9e-79 299.7 233 63.1
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 2.5e-79 299.3 202 69.8
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 3.3e-79 298.9 228 64.9
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 3.3e-79 298.9 233 60.1
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 3.3e-79 298.9 233 60.1
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 4.3e-79 298.5 247 59.9
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 5.7e-79 298.1 247 63.2
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 5.7e-79 298.1 250 58.0
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 7.4e-79 297.7 246 62.6
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 9.7e-79 297.4 202 69.3
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 9.7e-79 297.4 247 59.5
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.3e-78 297.0 246 60.2
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.3e-78 297.0 247 59.9
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.3e-78 297.0 250 58.8
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 1.6e-78 296.6 193 72.5
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 1.6e-78 296.6 237 62.0
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 2.8e-78 295.8 232 62.1
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 3.7e-78 295.4 244 59.4
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 3.7e-78 295.4 237 62.0
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 8.2e-78 294.3 242 61.2
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 8.2e-78 294.3 231 62.8
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 1.1e-77 293.9 236 61.4
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 1.1e-77 293.9 244 61.1
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 1.4e-77 293.5 208 66.8
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 2.4e-77 292.7 235 61.3
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 5.3e-77 291.6 212 65.6
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 6.9e-77 291.2 179 73.7
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 9.0e-77 290.8 234 61.1
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 9.0e-77 290.8 235 60.9
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 1.2e-76 290.4 248 61.3
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 1.5e-76 290.0 207 68.1
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.5e-76 290.0 231 61.5
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 2.6e-76 289.3 231 61.0
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.6e-76 289.3 250 58.8
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 3.4e-76 288.9 236 61.4
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 3.4e-76 288.9 234 60.3
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 4.5e-76 288.5 244 58.6
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.3e-75 287.0 193 67.9
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.2e-75 286.2 245 58.8
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 5.0e-75 285.0 228 62.3
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 1.1e-74 283.9 179 72.1
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 1.1e-74 283.9 179 70.9
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 1.1e-74 283.9 236 59.7
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 1.4e-74 283.5 179 70.9
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.4e-74 283.5 227 64.3
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 2.5e-74 282.7 270 56.3
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 7.2e-74 281.2 250 56.8
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 7.9e-73 277.7 184 67.9
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 3.0e-72 275.8 246 58.9
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 3.0e-72 275.8 288 52.4
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 7.4e-71 271.2 187 66.8
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 3.7e-70 268.9 217 59.4
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 6.3e-70 268.1 167 74.3
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 1.4e-69 266.9 250 54.8
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 2.4e-69 266.2 245 55.5
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.1e-69 265.8 268 53.0
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 9.1e-69 264.2 172 69.2
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 3.4e-68 262.3 190 67.9
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 9.4e-66 254.2 246 51.2
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 2.3e-64 249.6 211 60.2
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 6.7e-64 248.1 180 62.2
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 3.7e-62 242.3 233 52.4
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 6.3e-62 241.5 202 59.9
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 7.0e-61 238.0 185 63.8
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 1.2e-60 237.3 230 53.0
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 2.6e-60 236.1 186 61.3
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 4.5e-60 235.3 186 61.3
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.5e-58 230.3 170 62.9
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 3.2e-58 229.2 237 52.3
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 9.4e-58 227.6 245 49.8
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 1.6e-57 226.9 140 72.1
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 4.7e-57 225.3 157 66.9
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 8.0e-57 224.6 248 53.2
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 2.0e-55 219.9 146 68.5
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 8.2e-54 214.5 161 61.5
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 2.6e-52 209.5 189 53.4
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 9.4e-50 201.1 227 45.4
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 1.0e-48 197.6 169 57.4
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 8.8e-48 194.5 182 56.0
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 2.6e-47 193.0 130 70.0
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 7.5e-47 191.4 188 55.3
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 2.2e-46 189.9 185 54.1
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 1.1e-45 187.6 177 56.5
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 2.0e-44 183.3 182 49.5
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 1.2e-41 174.1 132 67.4
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 9.8e-39 164.5 146 58.9
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 6.3e-38 161.8 111 67.6
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 3.1e-37 159.5 119 69.7
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 2.0e-36 156.8 118 67.8
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 8.6e-35 151.4 86 77.9
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 3.3e-34 149.4 179 48.0
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 1.2e-33 147.5 155 52.9
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.2e-33 147.5 142 54.2
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 2.8e-33 146.4 157 51.0
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 6.1e-33 145.2 114 61.4
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 1.4e-32 144.1 134 61.2
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 1.4e-32 144.1 134 61.2
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 2.6e-31 139.8 166 49.4
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 5.7e-31 138.7 101 64.4
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 2.4e-29 133.3 124 54.8
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 5.4e-29 132.1 95 61.1
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.4e-24 117.5 65 87.7
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 5.4e-21 105.5 185 34.1
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 2.0e-20 103.6 72 66.7
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 3.5e-20 102.8 67 67.2
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 1.5e-15 87.4 70 58.6
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 2.6e-15 86.7 69 59.4
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.8e-15 85.5 84 60.7
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 9.2e-13 78.2 84 57.1
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 1.2e-12 77.8 120 42.5
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 2.3e-11 73.6 61 55.7
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 2.3e-11 73.6 105 42.9
Cpa.g.sc34.213 Carica papaya HOM05D004791 ORTHO05D005637 8.4e-06 55.1 34 70.6


User provided reference genes

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