Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 3.1e-93 345.1 174 100.0
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 3.3e-87 325.1 174 96.6
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 9.3e-82 307.0 174 91.4
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.8e-77 292.7 171 88.3
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.4e-77 292.4 169 88.8
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 6.9e-77 290.8 172 87.8
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 5.8e-76 287.7 173 87.3
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 5.8e-76 287.7 173 87.3
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 1.0e-75 287.0 175 86.3
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 2.9e-75 285.4 173 86.7
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 3.2e-74 282.0 175 84.6
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.2e-73 280.0 168 85.7
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.2e-73 280.0 174 83.3
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 3.5e-73 278.5 175 84.0
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.5e-71 273.1 169 83.4
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 8.2e-70 267.3 174 79.9
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 1.9e-66 256.1 176 77.8
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.8e-64 249.6 171 77.2
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.8e-64 249.6 171 77.2
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 2.6e-60 235.7 164 76.2
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 6.3e-54 214.5 174 69.5
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 5.3e-53 211.5 174 64.9
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 6.9e-53 211.1 168 64.9
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 9.1e-53 210.7 169 63.9
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 3.4e-52 208.8 169 63.3
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 2.2e-51 206.1 173 61.8
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 3.8e-51 205.3 168 63.1
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 3.8e-51 205.3 168 63.7
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 6.5e-51 204.5 169 61.5
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 8.5e-51 204.1 169 60.9
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.1e-50 203.8 168 61.9
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 2.5e-50 202.6 168 61.9
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 2.5e-50 202.6 169 62.1
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 2.5e-50 202.6 169 62.1
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 3.2e-50 202.2 174 61.5
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 4.2e-50 201.8 169 61.5
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 5.5e-50 201.4 118 86.4
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 5.5e-50 201.4 168 60.7
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 7.2e-50 201.1 130 78.5
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 1.2e-49 200.3 170 61.8
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 2.1e-49 199.5 168 61.3
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 2.7e-49 199.1 169 60.9
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 4.7e-49 198.4 168 61.9
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 4.7e-49 198.4 168 60.1
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 4.7e-49 198.4 170 63.5
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 4.7e-49 198.4 169 60.9
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 6.1e-49 198.0 127 78.0
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 6.1e-49 198.0 174 60.9
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 1.0e-48 197.2 174 59.8
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 1.4e-48 196.8 170 60.0
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.8e-48 196.4 168 60.7
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 3.0e-48 195.7 169 60.9
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 3.0e-48 195.7 168 61.9
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 3.9e-48 195.3 169 59.8
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 3.9e-48 195.3 169 58.6
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 5.2e-48 194.9 169 62.7
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 5.2e-48 194.9 168 61.3
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 8.8e-48 194.1 169 59.8
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 1.5e-47 193.4 168 59.5
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 3.3e-47 192.2 169 59.2
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 5.7e-47 191.4 169 59.2
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 7.4e-47 191.0 168 59.5
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 9.7e-47 190.7 169 58.0
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 9.7e-47 190.7 171 56.7
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 1.3e-46 190.3 169 58.0
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 2.8e-46 189.1 169 58.6
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 3.7e-46 188.7 171 56.7
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.1e-45 187.2 169 57.4
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 1.4e-45 186.8 169 58.6
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.1e-45 185.7 171 58.5
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.1e-45 185.7 171 58.5
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 4.1e-45 185.3 168 58.3
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 4.1e-45 185.3 171 57.9
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.6e-44 182.6 167 56.9
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 2.6e-44 182.6 168 58.3
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 2.6e-44 182.6 167 57.5
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 2.6e-44 182.6 167 57.5
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 3.5e-44 182.2 169 57.4
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 7.7e-44 181.0 167 58.1
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 1.0e-43 180.6 168 57.7
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.0e-43 180.6 167 57.5
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 1.0e-43 180.6 169 56.2
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.3e-43 180.3 162 57.4
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.7e-43 179.9 167 57.5
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 2.2e-43 179.5 168 57.7
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 2.2e-43 179.5 167 57.5
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 3.8e-43 178.7 167 55.7
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 5.0e-43 178.3 168 58.3
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 5.0e-43 178.3 167 55.7
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 5.0e-43 178.3 167 56.9
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 8.5e-43 177.6 162 56.2
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 8.5e-43 177.6 166 57.2
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 1.5e-42 176.8 168 56.5
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.5e-42 176.8 168 56.5
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.9e-42 176.4 171 54.4
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 1.9e-42 176.4 168 55.4
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 3.2e-42 175.6 162 59.9
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 3.2e-42 175.6 167 56.3
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 4.2e-42 175.3 169 56.2
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 4.2e-42 175.3 160 58.8
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 4.2e-42 175.3 168 56.0
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 5.5e-42 174.9 167 55.1
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 9.4e-42 174.1 169 55.0
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 9.4e-42 174.1 168 55.4
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 9.4e-42 174.1 171 53.8
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.2e-41 173.7 167 55.1
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 2.1e-41 172.9 177 54.2
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.7e-41 172.6 167 55.1
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 2.7e-41 172.6 167 55.1
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 6.1e-41 171.4 154 57.1
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 2.3e-40 169.5 126 71.4
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 4.0e-40 168.7 168 53.6
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 6.7e-40 167.9 167 54.5
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.5e-39 166.8 132 66.7
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 9.7e-39 164.1 164 53.0
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 2.8e-38 162.5 177 55.9
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 1.2e-36 157.1 161 52.8
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 2.7e-36 156.0 132 61.4
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.7e-36 156.0 168 52.4
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 7.7e-36 154.5 129 62.0
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 8.5e-35 151.0 127 58.3
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 7.2e-34 147.9 177 51.4
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 2.3e-32 142.9 166 47.0
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 2.6e-31 139.4 130 56.9
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 5.7e-31 138.3 129 55.0
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 1.7e-30 136.7 127 59.1
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 9.1e-29 131.0 168 47.0
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 5.9e-28 128.3 168 46.4
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 7.7e-28 127.9 168 46.4
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.0e-27 127.5 166 43.4
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 2.9e-27 125.9 159 44.7
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 1.1e-26 124.0 167 46.7
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 1.6e-25 120.2 171 43.9
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 1.8e-24 116.7 100 56.0
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 3.0e-24 115.9 140 45.0
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.2e-23 114.0 160 45.0
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 1.3e-22 110.5 154 39.6
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 2.2e-22 109.8 141 41.8
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 2.8e-22 109.4 122 43.4
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 5.4e-21 105.1 89 59.6
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 1.2e-20 104.0 136 44.1
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 1.9e-18 96.7 66 65.2
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 9.5e-18 94.4 78 60.3
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 1.3e-14 84.0 63 58.7
Sp4g08150 Schrenkiella parvula HOM05D000096 ORTHO05D000045 4.9e-14 82.0 45 86.7
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 6.4e-14 81.6 92 50.0
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.0e-12 76.6 97 42.3
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 7.8e-12 74.7 84 48.8
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 2.3e-11 73.2 70 57.1
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 1.9e-10 70.1 63 50.8
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.9e-10 70.1 167 34.7
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 3.1e-08 62.8 64 57.8
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 5.2e-08 62.0 69 55.1
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 2.0e-07 60.1 65 53.8
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 9.8e-07 57.8 84 39.3
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 9.8e-07 57.8 41 65.9
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.3e-06 57.4 65 52.3
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.9e-06 56.2 64 48.4
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 3.7e-06 55.8 80 36.2
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 3.7e-06 55.8 60 51.7
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 4.9e-06 55.5 60 50.0
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 4.9e-06 55.5 60 50.0
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 4.9e-06 55.5 63 41.3


User provided reference genes

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