Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 1.6e-95 352.8 186 100.0
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 9.0e-83 310.5 186 89.8
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 5.8e-82 307.8 188 88.3
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 4.9e-81 304.7 188 90.4
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 1.5e-77 293.1 185 87.0
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 2.6e-74 282.3 178 86.5
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 2.1e-71 272.7 189 84.1
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 2.7e-71 272.3 190 84.7
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 2.7e-71 272.3 190 84.7
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 1.3e-70 270.0 190 84.2
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 1.3e-70 270.0 190 84.2
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.1e-69 266.9 187 80.2
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 5.7e-69 264.6 186 79.6
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 8.2e-68 260.8 186 76.3
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 2.4e-67 259.2 189 76.2
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 3.1e-67 258.8 188 78.2
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 6.9e-67 257.7 188 75.0
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 9.0e-67 257.3 188 78.2
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 1.2e-66 256.9 186 79.6
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 2.6e-66 255.8 186 78.0
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 7.7e-66 254.2 187 79.1
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 7.9e-63 244.2 183 74.9
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 2.3e-62 242.7 193 73.6
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 6.3e-60 234.6 209 67.0
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 3.1e-59 232.3 194 68.6
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 5.3e-59 231.5 186 73.1
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 1.0e-57 227.3 167 75.4
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 5.0e-57 224.9 195 67.7
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 1.1e-56 223.8 174 70.1
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 1.4e-56 223.4 166 72.9
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 3.2e-56 222.2 173 72.8
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.6e-55 219.9 149 75.8
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.1e-55 219.5 151 77.5
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 2.7e-55 219.2 181 70.2
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 2.7e-55 219.2 181 70.2
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 3.6e-55 218.8 140 82.9
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 3.6e-55 218.8 183 69.9
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 4.7e-55 218.4 149 74.5
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 4.7e-55 218.4 172 72.7
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 6.1e-55 218.0 140 82.9
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 7.9e-55 217.6 143 83.2
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 1.4e-54 216.9 140 83.6
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.8e-54 216.5 186 67.2
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 1.8e-54 216.5 160 73.8
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 2.3e-54 216.1 196 68.4
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 2.3e-54 216.1 140 81.4
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 2.3e-54 216.1 167 72.5
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 2.3e-54 216.1 143 81.1
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 2.3e-54 216.1 186 67.7
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 2.3e-54 216.1 143 81.8
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 3.0e-54 215.7 174 72.4
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 3.9e-54 215.3 173 69.9
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 3.9e-54 215.3 152 77.6
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 5.1e-54 214.9 139 80.6
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 6.7e-54 214.5 160 75.6
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 8.8e-54 214.2 158 75.3
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 1.5e-53 213.4 141 82.3
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.5e-53 213.4 186 66.1
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 1.5e-53 213.4 186 66.1
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 2.0e-53 213.0 200 62.0
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 2.0e-53 213.0 164 73.2
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 2.0e-53 213.0 164 73.2
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 2.0e-53 213.0 180 70.6
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 2.6e-53 212.6 147 78.9
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 3.3e-53 212.2 140 82.1
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 4.4e-53 211.8 174 70.1
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 5.7e-53 211.5 148 77.7
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 5.7e-53 211.5 188 65.4
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 5.7e-53 211.5 184 66.3
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 5.7e-53 211.5 143 79.0
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 5.7e-53 211.5 163 72.4
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 7.4e-53 211.1 194 64.9
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 7.4e-53 211.1 187 66.8
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 7.4e-53 211.1 180 68.9
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 7.4e-53 211.1 140 82.1
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 7.4e-53 211.1 168 70.8
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 9.7e-53 210.7 151 76.8
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 9.7e-53 210.7 163 71.8
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 1.3e-52 210.3 150 76.7
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.3e-52 210.3 187 69.0
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 1.3e-52 210.3 148 79.7
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 2.2e-52 209.5 190 63.7
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 2.8e-52 209.1 139 81.3
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 3.7e-52 208.8 163 71.8
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 4.8e-52 208.4 140 80.0
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 6.3e-52 208.0 187 68.4
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 8.2e-52 207.6 149 75.8
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 1.1e-51 207.2 150 73.3
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 1.1e-51 207.2 138 80.4
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 1.1e-51 207.2 140 80.0
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 1.1e-51 207.2 140 80.0
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 1.1e-51 207.2 140 80.0
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.4e-51 206.8 139 77.7
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 1.4e-51 206.8 166 70.5
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 1.8e-51 206.5 187 65.2
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 4.1e-51 205.3 171 67.3
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 4.1e-51 205.3 164 68.9
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 5.3e-51 204.9 179 65.9
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 5.3e-51 204.9 143 76.2
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 7.0e-51 204.5 148 75.0
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 7.0e-51 204.5 190 64.2
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 9.1e-51 204.1 193 63.7
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 1.5e-50 203.4 175 69.1
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 1.5e-50 203.4 150 74.0
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 2.0e-50 203.0 141 78.0
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 2.0e-50 203.0 175 68.0
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 2.6e-50 202.6 195 65.6
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 2.6e-50 202.6 187 62.6
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 3.5e-50 202.2 196 64.3
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 3.5e-50 202.2 189 65.6
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 5.9e-50 201.4 176 69.9
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 5.9e-50 201.4 170 68.2
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 1.0e-49 200.7 197 61.4
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 1.3e-49 200.3 152 74.3
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.7e-49 199.9 115 90.4
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.7e-49 199.9 139 76.3
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.7e-49 199.9 139 75.5
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 2.2e-49 199.5 158 67.7
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 5.0e-49 198.4 158 70.9
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 1.1e-48 197.2 160 68.8
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 1.1e-48 197.2 143 74.1
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 1.4e-48 196.8 174 67.2
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 1.9e-48 196.4 115 88.7
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 4.2e-48 195.3 115 86.1
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 4.2e-48 195.3 115 86.1
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 5.5e-48 194.9 113 89.4
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.2e-47 193.7 186 65.1
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 2.1e-47 193.0 158 71.5
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 6.1e-47 191.4 112 88.4
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 2.3e-46 189.5 145 70.3
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 5.2e-46 188.3 113 85.0
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 1.5e-45 186.8 167 62.3
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 2.6e-45 186.0 182 61.5
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 4.8e-44 181.8 136 65.4
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 6.3e-44 181.4 177 60.5
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 3.1e-43 179.1 111 83.8
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.7e-41 173.3 139 66.2
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 2.2e-41 172.9 109 78.9
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 7.2e-40 167.9 129 71.3
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 9.4e-40 167.5 187 59.4
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 9.4e-40 167.5 179 55.9
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.4e-38 163.7 169 55.0
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.8e-38 163.3 138 66.7
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.8e-38 163.3 138 66.7
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 8.8e-38 161.0 147 61.9
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 1.2e-37 160.6 152 58.6
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 4.4e-37 158.7 113 71.7
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 5.7e-37 158.3 111 71.2
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 2.2e-36 156.4 115 73.0
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 8.3e-36 154.5 153 61.4
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 8.3e-36 154.5 152 62.5
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 8.3e-36 154.5 150 60.7
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 1.5e-32 143.7 108 73.1
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 3.2e-32 142.5 292 36.3
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 8.8e-30 134.4 109 61.5
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 1.3e-25 120.6 101 72.3
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 5.0e-25 118.6 96 74.0
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 6.6e-25 118.2 150 51.3
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 6.6e-25 118.2 132 50.8
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 1.9e-24 116.7 97 75.3
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 5.5e-24 115.2 91 72.5
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 1.2e-23 114.0 97 74.2
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 1.2e-23 114.0 97 74.2
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 8.9e-22 107.8 113 59.3
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 3.4e-21 105.9 88 68.2
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 5.0e-17 92.0 81 60.5
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 1.6e-15 87.0 49 91.8
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 8.0e-15 84.7 47 89.4
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 7.5e-13 78.2 44 88.6
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 5.6e-08 62.0 38 81.6


User provided reference genes

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