Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0004s0224 Capsella rubella HOM05D007513 ORTHO05D008148 1.9e-44 182.2 96 100.0
Thhalv10000379m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 1.1e-18 96.7 94 59.6
BcaNung02934 Brassica carinata HOM05D014277 ORTHO05D008148 1.1e-15 86.7 95 53.7
C07p62480 Brassica napus HOM05D014277 ORTHO05D008148 2.4e-15 85.5 95 53.7
Aa31LG6G14500 Aethionema arabicum HOM05D007513 ORTHO05D008148 5.4e-15 84.3 81 56.8
BcaNung02064 Brassica carinata HOM05D014277 ORTHO05D008148 2.1e-14 82.4 95 52.6
Thhalv10027185m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 2.1e-14 82.4 75 57.3
BolC3t20170H Brassica oleracea HOM05D007513 ORTHO05D008148 1.0e-13 80.1 70 58.6
A08p22690 Brassica napus HOM05D007513 ORTHO05D008148 1.3e-13 79.7 72 56.9
C03p79260 Brassica napus HOM05D007513 ORTHO05D008148 2.3e-13 79.0 70 57.1
BcaC01g00397 Brassica carinata HOM05D007513 ORTHO05D008148 3.0e-13 78.6 70 57.1
BcaB03g12338 Brassica carinata HOM05D007513 ORTHO05D008148 5.1e-13 77.8 70 57.1
THA.LOC104807627 Tarenaya hassleriana HOM05D007513 ORTHO05D008148 5.1e-13 77.8 78 56.4
BraA08t34236Z Brassica rapa HOM05D007513 ORTHO05D008148 6.6e-13 77.4 79 54.4
AT4G37608 Arabidopsis thaliana HOM05D014277 ORTHO05D008148 8.6e-13 77.0 81 50.6
BolC7t46662H Brassica oleracea HOM05D014277 ORTHO05D008148 3.3e-12 75.1 84 56.0
CARHR245990 Cardamine hirsuta HOM05D014277 ORTHO05D008148 4.7e-11 71.2 79 50.6
Manes.13G112700 Manihot esculenta HOM05D007513 ORTHO05D008148 6.2e-11 70.9 71 53.5
TWI09G0373 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 1.4e-10 69.7 70 54.3
DCAR_017173 Daucus carota HOM05D007513 ORTHO05D008148 1.8e-10 69.3 58 62.1
Atru.chr3.153 Acer truncatum HOM05D007513 ORTHO05D008148 3.1e-10 68.6 83 45.8
Hma1.2p1_0730F.1_g209790 Hydrangea macrophylla HOM05D007513 ORTHO05D008148 4.0e-10 68.2 64 56.2
Thecc.01G071100 Theobroma cacao HOM05D007513 ORTHO05D008148 4.0e-10 68.2 90 43.3
TWI73G0368 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 4.0e-10 68.2 81 48.1
Atru.chr3.182 Acer truncatum HOM05D007513 ORTHO05D008148 5.2e-10 67.8 83 45.8
Nitab4.5_0000714g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 6.8e-10 67.4 90 42.2
A03p65340 Brassica napus HOM05D014277 ORTHO05D008148 1.2e-09 66.6 83 50.6
BraA03t15588Z Brassica rapa HOM05D014277 ORTHO05D008148 1.2e-09 66.6 83 50.6
Potri.009G004400 Populus trichocarpa HOM05D007513 ORTHO05D008148 1.5e-09 66.2 68 52.9
ClCG10G015420 Citrullus lanatus HOM05D007513 ORTHO05D008148 2.0e-09 65.9 66 51.5
Psat6g024240 Pisum sativum HOM05D007513 ORTHO05D008148 2.0e-09 65.9 66 51.5
CSS0045444 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 2.6e-09 65.5 66 48.5
Duzib264G1124 Durio zibethinus HOM05D007513 ORTHO05D008148 2.6e-09 65.5 95 40.0
MD15G1295400 Malus domestica HOM05D007513 ORTHO05D008148 2.6e-09 65.5 71 52.1
Cc04_g16170 Coffea canephora HOM05D007513 ORTHO05D008148 3.4e-09 65.1 77 46.8
MD02G1183800 Malus domestica HOM05D007513 ORTHO05D008148 3.4e-09 65.1 57 57.9
Medtr4g088715 Medicago truncatula HOM05D007513 ORTHO05D008148 3.4e-09 65.1 66 50.0
DCAR_013160 Daucus carota HOM05D007513 ORTHO05D008148 4.4e-09 64.7 57 57.9
Psat6g076840 Pisum sativum HOM05D007513 ORTHO05D008148 4.4e-09 64.7 56 55.4
CiPaw.02G003300 Carya illinoinensis HOM05D007513 ORTHO05D008148 5.8e-09 64.3 62 51.6
CsaV3_3G041080 Cucumis sativus L. HOM05D007513 ORTHO05D008148 5.8e-09 64.3 66 51.5
Sc16g0003000 Simmondsia chinensis HOM05D007513 ORTHO05D008148 5.8e-09 64.3 68 51.5
Actinidia03699 Actinidia chinensis HOM05D007513 ORTHO05D008148 9.9e-09 63.5 65 50.8
CANSAT01G0833 Cannabis sativa HOM05D007513 ORTHO05D008148 9.9e-09 63.5 57 56.1
Nitab4.5_0001417g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 9.9e-09 63.5 57 52.6
Sed0010624 Sechium edule HOM05D007513 ORTHO05D008148 9.9e-09 63.5 57 54.4
CSS0003656 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.3e-08 63.2 86 40.7
Ciclev10023109m.g Citrus clementina HOM05D007513 ORTHO05D008148 1.3e-08 63.2 70 51.4
Dinv26918 Davidia involucrata HOM05D007513 ORTHO05D008148 1.7e-08 62.8 70 52.9
ECA233G3995 Erigeron canadensis HOM05D007513 ORTHO05D008148 1.7e-08 62.8 85 43.5
Prupe.6G222400 Prunus persica HOM05D007513 ORTHO05D008148 1.7e-08 62.8 57 56.1
FvH4_1g17450 Fragaria vesca HOM05D015974 ORTHO05D008148 2.2e-08 62.4 87 44.8
FAN19G1675 Fragaria x ananassa HOM05D015974 ORTHO05D008148 2.2e-08 62.4 87 44.8
FAN28G2668 Fragaria x ananassa HOM05D015974 ORTHO05D008148 2.2e-08 62.4 87 44.8
Gohir.D03G027900 Gossypium hirsutum HOM05D007513 ORTHO05D008148 2.2e-08 62.4 66 51.5
Ca_18552_v3 Cicer arietinum L. HOM05D007513 ORTHO05D008148 2.9e-08 62.0 61 47.5
COL.COLO4_11560 Corchorus olitorius HOM05D007513 ORTHO05D008148 2.9e-08 62.0 76 43.4
Dinv04064 Davidia involucrata HOM05D007513 ORTHO05D008148 2.9e-08 62.0 70 50.0
HanXRQChr08g0219071 Helianthus annuus HOM05D007513 ORTHO05D008148 2.9e-08 62.0 70 50.0
HanXRQChr08g0219141 Helianthus annuus HOM05D007513 ORTHO05D008148 2.9e-08 62.0 86 46.5
CSS0005454 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 3.8e-08 61.6 86 43.0
CSS0011696 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 3.8e-08 61.6 86 43.0
RcHm_v2.0_Chr5g0053551 Rosa chinensis HOM05D015974 ORTHO05D008148 3.8e-08 61.6 90 45.6
Solyc03g044080.4 Solanum lycopersicum HOM05D007513 ORTHO05D008148 3.8e-08 61.6 73 46.6
CDE07G2080 Ceratophyllum demersum HOM05D007513 ORTHO05D008148 4.9e-08 61.2 66 50.0
VMungo1080G1633 Vigna mungo HOM05D007513 ORTHO05D008148 4.9e-08 61.2 61 52.5
arahy.Tifrunner.gnm1.ann1.8F1CK2 Arachis hypogaea HOM05D007513 ORTHO05D008148 6.4e-08 60.8 56 51.8
arahy.Tifrunner.gnm1.ann1.LDCV9W Arachis hypogaea HOM05D007513 ORTHO05D008148 6.4e-08 60.8 56 51.8
unitig_0.g544 Utricularia gibba HOM05D007513 ORTHO05D008148 6.4e-08 60.8 58 51.7
AUR62016920 Chenopodium quinoa HOM05D007513 ORTHO05D008148 8.4e-08 60.5 57 56.1
FAN23G1252 Fragaria x ananassa HOM05D015974 ORTHO05D008148 8.4e-08 60.5 86 44.2
Rhsim11G0028000 Rhododendron simsii HOM05D007513 ORTHO05D008148 8.4e-08 60.5 62 51.6
TPR.G24448 Trifolium pratense HOM05D007513 ORTHO05D008148 8.4e-08 60.5 66 48.5
arahy.Tifrunner.gnm1.ann1.P2RW0X Arachis hypogaea HOM05D007513 ORTHO05D008148 1.1e-07 60.1 56 51.8
arahy.Tifrunner.gnm1.ann1.QIRY5C Arachis hypogaea HOM05D007513 ORTHO05D008148 1.1e-07 60.1 56 51.8
PGR102G1378 Punica granatum HOM05D007513 ORTHO05D008148 1.1e-07 60.1 69 43.5
Eucgr.A01208 Eucalyptus grandis HOM05D007513 ORTHO05D008148 1.4e-07 59.7 57 54.4
vmacro14398 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 1.4e-07 59.7 97 38.1
Lalb_Chr08g0235081 Lupinus albus HOM05D007513 ORTHO05D008148 2.4e-07 58.9 56 51.8
SalBow6G0964 Salvia bowleyana HOM05D007513 ORTHO05D008148 3.2e-07 58.5 75 44.0
Os03g0205150 Oryza sativa ssp. japonica HOM05D007513 ORTHO05D008148 4.2e-07 58.2 69 46.4
Peaxi162Scf00118g02024 Petunia axillaris HOM05D007513 ORTHO05D008148 4.2e-07 58.2 64 51.6
RcHm_v2.0_Chr5g0053611 Rosa chinensis HOM05D015974 ORTHO05D008148 5.4e-07 57.8 57 50.9
PGSC0003DMG400014868 Solanum tuberosum HOM05D007513 ORTHO05D008148 5.4e-07 57.8 73 43.8
Ah.14g088990 Amaranthus hybridus HOM05D007513 ORTHO05D008148 9.3e-07 57.0 57 52.6
Glyma.06G321800 Glycine max HOM05D007513 ORTHO05D008148 9.3e-07 57.0 60 48.3
Lalb_Chr24g0403261 Lupinus albus HOM05D007513 ORTHO05D008148 9.3e-07 57.0 56 50.0
SGA_v2.0_scaffold486G52374 Striga asiatica HOM05D007513 ORTHO05D008148 9.3e-07 57.0 89 40.4
Phvul.005G004100 Phaseolus vulgaris HOM05D007513 ORTHO05D008148 1.2e-06 56.6 61 45.9
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.2e-06 56.6 82 40.2
vmacro07203 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 1.2e-06 56.6 57 50.9
Lsat_1_v5_gn_8_17020 Lactuca sativa HOM05D007513 ORTHO05D008148 2.1e-06 55.8 62 45.2
Lsat_1_v5_gn_8_19701 Lactuca sativa HOM05D007513 ORTHO05D008148 2.7e-06 55.5 62 45.2
EL10Ac8g20627 Beta vulgaris HOM05D007513 ORTHO05D008148 4.6e-06 54.7 57 50.9
arahy.Tifrunner.gnm1.ann1.S3QGNL Arachis hypogaea HOM05D000640 ORTHO05D008148 7.8e-06 53.9 46 56.5
MELO3C030975.2 Cucumis melo HOM05D007513 ORTHO05D008148 7.8e-06 53.9 55 54.5


User provided reference genes

Program Settings