Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 5.3e-66 254.2 130 100.0
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 3.0e-61 238.4 130 93.8
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 3.4e-60 235.0 130 93.8
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 3.6e-54 214.9 129 86.8
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 1.3e-51 206.5 130 86.2
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 5.9e-49 197.6 129 82.2
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 4.4e-44 181.4 125 77.6
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 4.4e-44 181.4 125 77.6
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 4.4e-44 181.4 125 77.6
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 4.4e-44 181.4 125 77.6
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 5.8e-44 181.0 132 72.7
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 9.8e-44 180.3 125 77.6
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 1.5e-39 166.4 126 71.4
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 9.8e-36 153.7 131 62.6
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 1.3e-35 153.3 129 63.6
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 1.7e-35 152.9 129 63.6
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 1.7e-35 152.9 129 63.6
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 1.1e-34 150.2 128 60.9
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 2.4e-34 149.1 137 62.0
Potri.009G136100 Populus trichocarpa HOM05D006047 ORTHO05D007353 3.2e-34 148.7 143 59.4
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 7.0e-34 147.5 125 60.0
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 9.2e-34 147.1 131 61.1
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 9.2e-34 147.1 129 59.7
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 1.2e-33 146.7 140 60.0
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 1.2e-33 146.7 138 58.7
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 1.2e-33 146.7 138 57.2
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 1.2e-33 146.7 138 57.2
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 1.2e-33 146.7 125 60.8
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 3.5e-33 145.2 152 53.9
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 1.0e-32 143.7 141 57.4
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 1.3e-32 143.3 125 58.4
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 3.0e-32 142.1 125 58.4
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 3.9e-32 141.7 125 56.8
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 3.9e-32 141.7 131 55.7
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 6.6e-32 141.0 141 56.0
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 8.6e-32 140.6 125 57.6
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 8.6e-32 140.6 123 61.8
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 1.1e-31 140.2 137 56.9
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 1.1e-31 140.2 137 57.7
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 1.5e-31 139.8 134 56.7
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 1.9e-31 139.4 138 56.5
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 3.3e-31 138.7 141 57.4
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 3.3e-31 138.7 141 55.3
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 5.6e-31 137.9 139 56.1
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 5.6e-31 137.9 155 54.2
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 5.6e-31 137.9 125 56.8
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 9.5e-31 137.1 141 53.9
Sabra09G0105700 Salix brachista HOM05D006047 ORTHO05D007353 1.6e-30 136.3 137 58.4
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 2.1e-30 136.0 143 53.8
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 2.8e-30 135.6 127 56.7
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 2.8e-30 135.6 131 57.3
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 2.8e-30 135.6 141 52.5
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 3.6e-30 135.2 131 56.5
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 3.6e-30 135.2 146 50.7
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 8.1e-30 134.0 136 56.6
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 8.1e-30 134.0 129 56.6
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 1.1e-29 133.7 125 56.8
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 1.4e-29 133.3 144 57.6
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 1.8e-29 132.9 154 49.4
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 1.8e-29 132.9 128 55.5
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 1.8e-29 132.9 139 53.2
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 4.0e-29 131.7 131 55.0
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 5.2e-29 131.3 140 53.6
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 5.2e-29 131.3 136 52.9
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 6.8e-29 131.0 125 52.8
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 6.8e-29 131.0 131 56.5
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 6.8e-29 131.0 130 56.2
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 8.9e-29 130.6 141 51.1
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 1.2e-28 130.2 150 50.7
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 1.5e-28 129.8 133 53.4
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 1.5e-28 129.8 142 52.8
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 1.5e-28 129.8 134 53.7
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 1.5e-28 129.8 140 55.0
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 1.5e-28 129.8 142 52.1
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 1.5e-28 129.8 142 52.1
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 2.0e-28 129.4 131 53.4
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 2.0e-28 129.4 139 54.0
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 2.6e-28 129.0 149 51.7
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 3.4e-28 128.6 133 54.9
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 3.4e-28 128.6 132 53.8
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 3.4e-28 128.6 135 55.6
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 3.4e-28 128.6 135 55.6
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 4.4e-28 128.3 145 49.7
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 5.8e-28 127.9 133 54.9
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 7.5e-28 127.5 132 55.3
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 9.9e-28 127.1 144 52.1
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 9.9e-28 127.1 127 55.1
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 9.9e-28 127.1 129 57.4
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 1.3e-27 126.7 146 49.3
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 1.7e-27 126.3 133 54.1
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.7e-27 126.3 133 54.1
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 2.2e-27 125.9 130 53.1
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 2.2e-27 125.9 141 49.6
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 3.7e-27 125.2 131 53.4
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 8.3e-27 124.0 125 56.0
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 8.3e-27 124.0 143 51.0
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 1.4e-26 123.2 137 54.0
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 1.9e-26 122.9 145 49.0
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 2.4e-26 122.5 140 53.6
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 5.4e-26 121.3 118 57.6
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 5.4e-26 121.3 145 51.0
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 5.4e-26 121.3 146 50.0
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 7.1e-26 120.9 130 50.0
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 2.1e-25 119.4 117 58.1
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 2.1e-25 119.4 130 49.2
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 2.1e-25 119.4 142 51.4
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 2.7e-25 119.0 117 57.3
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 2.3e-24 115.9 125 52.0
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 3.0e-24 115.5 141 51.1
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 3.3e-23 112.1 129 51.2
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 6.2e-22 107.8 128 53.1
Zm00001eb331780 Zea mays HOM05D006047 ORTHO05D007353 1.8e-21 106.3 143 44.1
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 2.0e-20 102.8 135 45.9
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 5.8e-20 101.3 127 48.0
Zm00001eb103880 Zea mays HOM05D006047 ORTHO05D007353 1.7e-19 99.8 141 43.3
Nitab4.5_0000283g0480 Nicotiana tabacum HOM05D006047 ORTHO05D007353 2.2e-19 99.4 139 43.9
SMO367G0473 Selaginella moellendorffii HOM05D006047 ORTHO05D007353 3.8e-19 98.6 146 42.5
CDE04G1108 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 1.6e-17 93.2 114 46.5
MD05G1195600 Malus domestica HOM05D006047 ORTHO05D007353 1.6e-17 93.2 106 51.9
SEGI_27161 Sequoiadendron giganteum HOM05D006047 ORTHO05D007353 5.1e-16 88.2 109 48.6
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 1.5e-15 86.7 123 42.3
Nitab4.5_0003914g0120 Nicotiana tabacum HOM05D006047 ORTHO05D007353 7.3e-15 84.3 125 44.0
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 7.3e-15 84.3 115 43.5
Sed0021144 Sechium edule HOM05D006047 ORTHO05D007353 1.7e-11 73.2 59 59.3
CAN.G588.87 Capsicum annuum HOM05D006047 ORTHO05D007353 2.2e-11 72.8 57 61.4
Sed0002860 Sechium edule HOM05D006047 ORTHO05D007353 6.4e-11 71.2 59 57.6
SalBow5G2603 Salvia bowleyana HOM05D006047 ORTHO05D007353 1.2e-09 67.0 47 63.8
Cre01.g031250 Chlamydomonas reinhardtii HOM05D006047 ORTHO05D007353 3.5e-09 65.5 115 35.7
HPP92_025899 Vanilla planifolia HOM05D006047 ORTHO05D007353 2.5e-07 59.3 46 54.3
Zm00001eb046330 Zea mays HOM05D001486 ORTHO05D036446 1.6e-06 56.6 41 63.4


User provided reference genes

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