Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 2.2e-188 662.1 336 100.0
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 1.8e-81 307.0 378 48.9
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 1.2e-80 304.3 372 48.9
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 2.1e-77 293.5 372 46.8
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 6.2e-74 282.0 369 46.9
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 3.1e-73 279.6 381 45.1
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 4.0e-73 279.3 382 45.0
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 1.1e-70 271.2 370 45.7
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 1.7e-63 247.3 373 41.0
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 8.4e-63 245.0 365 43.0
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 7.1e-62 241.9 357 42.6
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 7.1e-62 241.9 357 42.6
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 7.1e-62 241.9 362 41.2
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 1.2e-61 241.1 357 42.0
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 1.2e-61 241.1 357 42.0
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 1.2e-61 241.1 357 42.0
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 3.5e-61 239.6 391 39.4
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 1.0e-60 238.0 362 39.8
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 6.6e-60 235.3 361 40.2
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 2.1e-58 230.3 352 39.5
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 8.1e-58 228.4 363 39.1
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.8e-57 227.3 390 38.5
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 1.8e-57 227.3 363 39.4
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 2.4e-57 226.9 390 38.7
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 3.1e-57 226.5 372 39.5
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 5.3e-57 225.7 359 40.7
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 9.0e-57 224.9 392 37.2
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 8.4e-55 218.4 353 38.8
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 1.4e-54 217.6 363 37.5
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 2.4e-54 216.9 367 38.7
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 2.1e-53 213.8 366 40.4
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 1.3e-52 211.1 371 37.5
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 1.3e-52 211.1 350 38.9
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 2.3e-52 210.3 369 36.3
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 8.7e-52 208.4 364 38.5
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 1.5e-51 207.6 374 36.4
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 1.9e-51 207.2 356 37.9
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 2.5e-51 206.8 370 35.7
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 2.5e-51 206.8 373 37.5
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 2.5e-51 206.8 355 40.3
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 3.3e-51 206.5 373 36.7
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 5.6e-51 205.7 359 38.2
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 9.6e-51 204.9 347 37.5
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 9.6e-51 204.9 363 37.2
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 1.3e-50 204.5 347 36.9
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 1.6e-50 204.1 365 36.4
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 2.1e-50 203.8 347 36.6
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 2.8e-50 203.4 239 46.0
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 2.8e-50 203.4 364 38.2
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.8e-50 203.4 362 37.0
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 2.8e-50 203.4 347 37.2
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.7e-50 203.0 362 37.0
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 3.7e-50 203.0 380 37.6
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 3.7e-50 203.0 364 37.4
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 4.8e-50 202.6 376 37.0
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 6.2e-50 202.2 369 36.9
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 8.1e-50 201.8 362 37.0
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.8e-49 200.7 363 38.0
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 1.8e-49 200.7 377 36.3
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 1.8e-49 200.7 369 36.6
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 1.8e-49 200.7 367 36.2
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 1.8e-49 200.7 346 38.7
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 2.4e-49 200.3 350 38.6
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 5.3e-49 199.1 360 36.9
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 9.0e-49 198.4 347 36.0
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.2e-48 198.0 316 39.9
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 4.5e-48 196.1 348 36.5
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 7.6e-48 195.3 350 37.1
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 7.6e-48 195.3 363 36.1
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 1.0e-47 194.9 345 37.4
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 1.3e-47 194.5 369 37.1
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 1.7e-47 194.1 338 38.5
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 3.8e-47 193.0 340 37.9
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 1.1e-46 191.4 207 52.7
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 1.9e-46 190.7 360 36.9
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 2.5e-46 190.3 373 35.7
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 5.5e-46 189.1 380 35.8
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 7.1e-46 188.7 377 35.5
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 9.3e-46 188.3 354 37.0
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 1.2e-45 188.0 388 36.3
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 1.6e-45 187.6 352 35.5
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 2.1e-45 187.2 356 36.0
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 2.1e-45 187.2 377 34.7
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 2.7e-45 186.8 345 37.4
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 1.0e-44 184.9 357 34.7
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.0e-44 184.9 397 34.8
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.0e-44 184.9 364 36.5
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.8e-44 184.1 203 46.3
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 8.7e-44 181.8 373 34.9
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 2.1e-42 177.2 347 34.3
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.1e-41 174.9 233 45.1
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 2.4e-41 173.7 211 47.4
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 2.4e-41 173.7 351 33.3
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 5.3e-41 172.6 211 45.5
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 9.0e-41 171.8 351 33.9
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 1.5e-40 171.0 350 34.6
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 2.0e-40 170.6 349 33.2
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 2.0e-40 170.6 360 35.0
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 2.6e-40 170.2 349 33.0
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 2.6e-40 170.2 374 32.9
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 4.5e-40 169.5 202 46.0
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 5.8e-40 169.1 349 34.4
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.3e-39 167.9 211 48.8
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 1.7e-39 167.5 384 32.8
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 1.7e-39 167.5 355 33.2
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 2.9e-39 166.8 363 35.0
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 3.8e-39 166.4 355 33.0
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 1.9e-38 164.1 299 37.8
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 1.9e-38 164.1 350 33.4
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 2.5e-38 163.7 210 44.3
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 1.0e-36 158.3 209 46.9
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.5e-35 154.5 384 31.8
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 1.5e-35 154.5 203 45.3
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 2.5e-35 153.7 217 41.5
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 6.9e-33 145.6 366 31.4
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 3.4e-32 143.3 157 56.7
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 2.9e-31 140.2 355 33.2
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.5e-30 137.1 210 41.4
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 5.5e-30 136.0 231 38.1
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 2.1e-29 134.0 564 24.1
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 4.6e-29 132.9 197 38.6
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 6.7e-28 129.0 190 41.1
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 3.1e-25 120.2 367 28.6
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.5e-24 117.9 230 35.7
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.6e-24 117.1 140 42.9
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.0e-23 115.2 154 42.2
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 1.4e-22 111.3 248 32.3
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 9.4e-22 108.6 284 29.2
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 2.7e-21 107.1 359 26.2
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 3.6e-21 106.7 207 33.8
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 6.1e-21 105.9 244 33.2
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.5e-19 101.3 176 38.1
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 3.3e-19 100.1 113 50.4
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.8e-18 96.3 106 48.1
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 3.1e-17 93.6 235 33.2
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 1.5e-16 91.3 249 34.9
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 5.5e-14 82.8 139 41.0
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 3.6e-13 80.1 114 39.5
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.4e-12 78.2 151 33.8
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 6.3e-10 69.3 182 28.6
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 2.4e-09 67.4 280 26.4
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 4.5e-08 63.2 99 41.4
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 3.2e-06 57.0 319 25.4
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 7.2e-06 55.8 140 30.0


User provided reference genes

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