Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 5.5e-153 544.3 277 100.0
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 1.3e-130 469.9 267 89.9
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 5.0e-130 468.0 278 87.8
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 2.2e-125 452.6 275 86.2
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 1.6e-112 409.8 278 78.4
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 1.1e-105 387.1 270 78.1
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 9.5e-105 384.0 257 80.9
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 3.6e-104 382.1 271 77.1
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 3.1e-103 379.0 257 79.8
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 3.1e-103 379.0 202 94.1
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 4.4e-102 375.2 261 78.5
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 2.9e-101 372.5 261 78.2
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 7.1e-100 367.9 237 80.6
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 2.7e-91 339.3 268 69.4
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 6.6e-90 334.7 277 65.7
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 8.7e-90 334.3 269 67.7
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.5e-89 333.6 272 66.2
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 4.3e-89 332.0 239 72.8
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 3.6e-88 328.9 250 70.0
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 4.8e-88 328.6 260 68.1
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 6.2e-88 328.2 265 66.8
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 1.4e-87 327.0 211 79.1
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.8e-87 326.6 267 65.9
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 4.0e-87 325.5 270 65.6
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 5.3e-87 325.1 272 64.7
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 5.3e-87 325.1 202 80.2
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 9.0e-87 324.3 217 76.0
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 3.4e-86 322.4 238 71.4
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 5.8e-86 321.6 204 80.4
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 2.2e-85 319.7 266 65.4
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 2.9e-85 319.3 248 69.0
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 3.8e-85 318.9 263 66.2
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 4.9e-85 318.5 204 78.9
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 8.4e-85 317.8 204 78.9
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 1.1e-84 317.4 238 72.7
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 1.1e-84 317.4 202 79.2
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 1.1e-84 317.4 202 79.2
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 5.4e-84 315.1 232 69.8
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 7.1e-84 314.7 204 77.5
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 7.1e-84 314.7 220 75.5
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 9.3e-84 314.3 277 63.9
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 9.3e-84 314.3 241 69.3
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 1.2e-83 313.9 241 68.0
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 1.2e-83 313.9 236 71.6
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 1.0e-82 310.8 247 67.6
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.0e-82 310.8 244 67.6
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.0e-82 310.8 247 67.6
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 1.3e-82 310.5 215 75.8
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 1.3e-82 310.5 219 72.6
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.7e-82 310.1 272 61.4
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 3.9e-82 308.9 234 69.2
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 5.1e-82 308.5 258 65.9
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 5.1e-82 308.5 223 72.6
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.7e-82 307.8 216 73.6
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.1e-81 307.4 216 73.6
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 1.5e-81 307.0 237 69.2
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 1.9e-81 306.6 204 76.5
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 1.9e-81 306.6 204 76.0
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 2.5e-81 306.2 204 75.5
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 4.3e-81 305.4 266 63.9
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 4.3e-81 305.4 204 75.0
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 4.3e-81 305.4 230 70.0
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 4.3e-81 305.4 204 76.0
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 9.6e-81 304.3 193 79.8
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 9.6e-81 304.3 235 66.8
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 1.3e-80 303.9 247 67.2
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.3e-80 303.9 269 63.6
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 1.3e-80 303.9 226 69.0
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.6e-80 303.5 213 73.7
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 2.1e-80 303.1 204 75.0
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.8e-80 302.8 204 74.0
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 2.8e-80 302.8 210 73.3
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 3.6e-80 302.4 253 64.8
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 3.6e-80 302.4 201 76.6
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 4.8e-80 302.0 234 67.1
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 8.1e-80 301.2 222 72.1
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.1e-79 300.8 289 59.5
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 1.1e-79 300.8 259 60.6
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 1.1e-79 300.8 205 73.7
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.4e-79 300.4 228 71.5
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 1.8e-79 300.1 207 76.3
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 1.8e-79 300.1 227 70.5
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 5.3e-79 298.5 204 73.5
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 5.3e-79 298.5 204 74.0
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 5.3e-79 298.5 204 74.5
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 1.2e-78 297.4 204 74.5
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 1.2e-78 297.4 193 77.7
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 1.5e-78 297.0 217 70.0
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.5e-78 297.0 204 73.5
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 2.6e-78 296.2 269 61.0
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 5.8e-78 295.0 204 74.5
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 5.8e-78 295.0 193 77.7
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 5.8e-78 295.0 234 68.4
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 5.8e-78 295.0 216 70.8
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 1.3e-77 293.9 240 65.0
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 1.7e-77 293.5 259 64.1
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 6.4e-77 291.6 200 73.0
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 1.9e-76 290.0 201 73.1
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 1.6e-75 287.0 204 71.6
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.7e-75 286.2 220 70.5
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 4.6e-75 285.4 193 74.1
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 7.9e-75 284.6 175 84.0
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 1.0e-74 284.3 267 59.6
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 1.3e-74 283.9 196 71.9
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 3.0e-74 282.7 194 75.3
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 5.1e-74 282.0 218 67.9
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 2.5e-73 279.6 236 61.4
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 3.3e-73 279.3 219 66.7
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 3.3e-73 279.3 200 70.0
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 4.3e-73 278.9 241 64.3
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 3.7e-72 275.8 205 69.3
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.4e-71 273.9 210 69.0
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 5.3e-71 271.9 194 72.7
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 9.0e-71 271.2 193 71.5
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 9.0e-71 271.2 203 67.0
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.0e-70 270.0 177 79.7
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 2.0e-70 270.0 198 69.2
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 6.0e-67 258.5 177 75.7
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 1.3e-66 257.3 200 69.0
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 8.7e-66 254.6 202 66.8
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 1.3e-64 250.8 177 71.2
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 6.3e-64 248.4 177 71.8
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.4e-63 247.3 179 70.4
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 5.0e-61 238.8 256 52.3
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 1.4e-60 237.3 184 69.0
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 3.2e-60 236.1 210 60.0
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 4.6e-59 232.3 211 58.3
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 4.3e-57 225.7 210 56.2
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 1.7e-53 213.8 165 67.3
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 1.7e-53 213.8 165 67.3
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 6.1e-51 205.3 222 56.3
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 3.3e-49 199.5 258 50.0
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 1.7e-48 197.2 177 61.6
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.3e-45 187.6 201 49.3
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 6.5e-45 185.3 130 72.3
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 5.7e-41 172.2 177 52.5
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 2.4e-39 166.8 106 77.4
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 2.5e-36 156.8 106 73.6
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.3e-32 144.4 193 45.1
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 2.2e-32 143.7 88 79.5
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 1.0e-29 134.8 238 39.5
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 3.8e-29 132.9 87 74.7
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 2.6e-25 120.2 226 36.7
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.4e-23 114.4 200 38.0
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 4.1e-23 112.8 209 33.5
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.3e-21 107.8 190 36.3
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 6.5e-21 105.5 78 66.7
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 5.5e-20 102.4 77 64.9
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 6.1e-19 99.0 70 70.0
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 2.3e-18 97.1 199 34.2
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 4.1e-15 86.3 69 65.2
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 1.0e-13 81.6 79 53.2
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 1.1e-12 78.2 65 64.6
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 1.5e-12 77.8 111 43.2
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 5.6e-12 75.9 44 81.8
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 1.6e-11 74.3 54 72.2
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 1.6e-11 74.3 54 72.2
C09p34930 Brassica napus HOM05D001108 ORTHO05D005418 6.1e-11 72.4 50 76.0
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 2.0e-06 57.4 62 56.5


User provided reference genes

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