Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3497 Capsella rubella HOM05D007363 ORTHO05D009018 1.2e-83 313.2 155 100.0
AT2G20515 Arabidopsis thaliana HOM05D007363 ORTHO05D009018 1.6e-72 276.2 147 90.5
CARHR111060 Cardamine hirsuta HOM05D007363 ORTHO05D009018 7.8e-72 273.9 151 87.4
BraA03t10685Z Brassica rapa HOM05D007363 ORTHO05D009018 1.3e-71 273.1 151 86.8
BcaB01g04373 Brassica carinata HOM05D007363 ORTHO05D009018 5.0e-71 271.2 151 85.4
AL3G53530 Arabidopsis lyrata HOM05D007363 ORTHO05D009018 1.9e-70 269.2 151 86.8
A03p13820 Brassica napus HOM05D007363 ORTHO05D009018 1.9e-70 269.2 151 86.1
Sp3g33740 Schrenkiella parvula HOM05D007363 ORTHO05D009018 1.9e-70 269.2 151 85.4
BolC3t14048H Brassica oleracea HOM05D007363 ORTHO05D009018 7.3e-70 267.3 151 86.1
Thhalv10002113m.g Eutrema salsugineum HOM05D007363 ORTHO05D009018 7.3e-70 267.3 151 86.8
BcaC01g06392 Brassica carinata HOM05D007363 ORTHO05D009018 1.6e-69 266.2 151 85.4
C03p16260 Brassica napus HOM05D007363 ORTHO05D009018 1.6e-69 266.2 151 85.4
BcaB08g34913 Brassica carinata HOM05D007363 ORTHO05D009018 2.8e-69 265.4 151 83.4
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 6.0e-64 247.7 149 81.2
THA.LOC104814517 Tarenaya hassleriana HOM05D007363 ORTHO05D009018 1.1e-60 236.9 142 78.9
Potri.002G038200 Populus trichocarpa HOM05D007363 ORTHO05D009018 1.5e-43 179.9 148 63.5
Sabra05G0173300 Salix brachista HOM05D007363 ORTHO05D009018 3.4e-43 178.7 148 62.2
CSS0036840 Camellia sinensis var. sinensis HOM05D007363 ORTHO05D009018 7.6e-43 177.6 146 58.9
GSVIVG01028336001 Vitis vinifera HOM05D007363 ORTHO05D009018 7.6e-43 177.6 153 59.5
Potri.005G224600 Populus trichocarpa HOM05D007363 ORTHO05D009018 2.2e-42 176.0 148 60.8
arahy.Tifrunner.gnm1.ann1.1CEJ34 Arachis hypogaea HOM05D007363 ORTHO05D009018 3.8e-42 175.3 137 62.0
Lj1g0022592 Lotus japonicus HOM05D007363 ORTHO05D009018 3.8e-42 175.3 122 68.0
Manes.12G032500 Manihot esculenta HOM05D007363 ORTHO05D009018 3.8e-42 175.3 151 61.6
arahy.Tifrunner.gnm1.ann1.F24DAH Arachis hypogaea HOM05D007363 ORTHO05D009018 1.4e-41 173.3 137 62.0
MD05G1197000 Malus domestica HOM05D007363 ORTHO05D009018 2.4e-41 172.6 155 59.4
Nn3g19660 Nelumbo nucifera HOM05D007363 ORTHO05D009018 4.2e-41 171.8 160 57.5
Prupe.8G223500 Prunus persica HOM05D007363 ORTHO05D009018 4.2e-41 171.8 146 60.3
Atru.chr5.1691 Acer truncatum HOM05D007363 ORTHO05D009018 5.4e-41 171.4 141 63.1
TWI18G0555 Tripterygium wilfordii HOM05D007363 ORTHO05D009018 1.2e-40 170.2 150 61.3
TAR365G0665 Trochodendron aralioides HOM05D007363 ORTHO05D009018 1.6e-40 169.9 149 61.1
Lj1C66G14 Lonicera japonica HOM05D007363 ORTHO05D009018 2.1e-40 169.5 148 58.8
CiPaw.04G186800 Carya illinoinensis HOM05D007363 ORTHO05D009018 2.7e-40 169.1 149 60.4
PSO063G1687 Papaver somniferum HOM05D007363 ORTHO05D009018 3.5e-40 168.7 159 56.0
Phvul.001G161200 Phaseolus vulgaris HOM05D007363 ORTHO05D009018 4.6e-40 168.3 142 58.5
QL09p038775 Quercus lobata HOM05D007363 ORTHO05D009018 4.6e-40 168.3 158 57.0
Solyc06g083880.2 Solanum lycopersicum HOM05D007363 ORTHO05D009018 4.6e-40 168.3 153 54.9
Medtr7g096960 Medicago truncatula HOM05D007363 ORTHO05D009018 6.0e-40 167.9 141 57.4
ATR0736G122 Amborella trichopoda HOM05D007363 ORTHO05D009018 7.8e-40 167.5 152 57.2
Dinv22404 Davidia involucrata HOM05D007363 ORTHO05D009018 7.8e-40 167.5 153 55.6
PSO017G1673 Papaver somniferum HOM05D007363 ORTHO05D009018 7.8e-40 167.5 159 55.3
Ciclev10024115m.g Citrus clementina HOM05D007363 ORTHO05D009018 1.3e-39 166.8 124 66.1
VMungo1383G1059 Vigna mungo HOM05D007363 ORTHO05D009018 1.3e-39 166.8 147 57.1
Actinidia25792 Actinidia chinensis HOM05D007363 ORTHO05D009018 1.7e-39 166.4 153 57.5
HanXRQChr10g0280941 Helianthus annuus HOM05D007363 ORTHO05D009018 2.3e-39 166.0 153 54.2
Lalb_Chr01g0019641 Lupinus albus HOM05D007363 ORTHO05D009018 3.0e-39 165.6 140 56.4
Nitab4.5_0020962g0010 Nicotiana tabacum HOM05D007363 ORTHO05D009018 3.9e-39 165.2 153 53.6
Glyma.03G163300 Glycine max HOM05D007363 ORTHO05D009018 8.7e-39 164.1 122 63.9
Rhsim01G0263400 Rhododendron simsii HOM05D007363 ORTHO05D009018 8.7e-39 164.1 154 56.5
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 1.5e-38 163.3 152 55.3
COL.COLO4_05892 Corchorus olitorius HOM05D007363 ORTHO05D009018 1.5e-38 163.3 161 52.8
AUR62011874 Chenopodium quinoa HOM05D005758 ORTHO05D007218 1.9e-38 162.9 143 54.5
DCAR_000936 Daucus carota HOM05D007363 ORTHO05D009018 1.9e-38 162.9 157 53.5
FvH4_2g21450 Fragaria vesca HOM05D007363 ORTHO05D009018 2.5e-38 162.5 146 58.2
Oeu026230.1 Olea europaea HOM05D007363 ORTHO05D009018 4.3e-38 161.8 149 55.7
Sopen06g035280 Solanum pennellii HOM05D007363 ORTHO05D009018 5.6e-38 161.4 150 55.3
FAN20G0360 Fragaria x ananassa HOM05D007363 ORTHO05D009018 7.3e-38 161.0 151 55.6
PGSC0003DMG400020073 Solanum tuberosum HOM05D007363 ORTHO05D009018 7.3e-38 161.0 150 55.3
FAN24G0389 Fragaria x ananassa HOM05D007363 ORTHO05D009018 9.6e-38 160.6 138 58.7
SalBow6G5236 Salvia bowleyana HOM05D007363 ORTHO05D009018 1.6e-37 159.8 138 57.2
Ca_08677_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 3.6e-37 158.7 122 62.3
Ca_08711_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 3.6e-37 158.7 122 62.3
Peaxi162Scf00013g01119 Petunia axillaris HOM05D007363 ORTHO05D009018 3.6e-37 158.7 124 60.5
AUR62024717 Chenopodium quinoa HOM05D007363 ORTHO05D009018 4.8e-37 158.3 156 53.2
Aqoxy5G00227 Aquilegia oxysepala HOM05D007363 ORTHO05D009018 6.2e-37 157.9 167 52.7
Hma1.2p1_0576F.1_g182050 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 6.2e-37 157.9 123 62.6
ECA247G1846 Erigeron canadensis HOM05D007363 ORTHO05D009018 8.1e-37 157.5 150 54.0
Lsat_1_v5_gn_9_8480 Lactuca sativa HOM05D007363 ORTHO05D009018 8.1e-37 157.5 143 56.6
RcHm_v2.0_Chr6g0288091 Rosa chinensis HOM05D007363 ORTHO05D009018 1.4e-36 156.8 129 60.5
Cpa.g.sc165.9 Carica papaya HOM05D007363 ORTHO05D009018 3.1e-36 155.6 142 54.2
Cfa002427 Carpinus fangiana HOM05D007363 ORTHO05D009018 4.0e-36 155.2 120 65.0
Thecc.01G258000 Theobroma cacao HOM05D007363 ORTHO05D009018 6.9e-36 154.5 124 62.9
Gohir.A07G148800 Gossypium hirsutum HOM05D007363 ORTHO05D009018 1.2e-35 153.7 154 54.5
Duzib133G1388 Durio zibethinus HOM05D007363 ORTHO05D009018 1.5e-35 153.3 158 52.5
FAN15G0604 Fragaria x ananassa HOM05D007363 ORTHO05D009018 2.0e-35 152.9 135 58.5
Gorai.001G177500 Gossypium raimondii HOM05D007363 ORTHO05D009018 2.6e-35 152.5 121 62.8
Eucgr.K03259 Eucalyptus grandis HOM05D007363 ORTHO05D009018 3.4e-35 152.1 149 54.4
Eucgr.L02952 Eucalyptus grandis HOM05D007363 ORTHO05D009018 3.4e-35 152.1 149 54.4
Psat3g056960 Pisum sativum HOM05D007363 ORTHO05D009018 3.4e-35 152.1 152 52.0
EL10Ac5g10397 Beta vulgaris HOM05D007363 ORTHO05D009018 5.8e-35 151.4 146 53.4
Gohir.D07G155100 Gossypium hirsutum HOM05D007363 ORTHO05D009018 5.8e-35 151.4 121 62.8
Cc01_g18330 Coffea canephora HOM05D007363 ORTHO05D009018 1.3e-34 150.2 125 55.2
Duzib138G0908 Durio zibethinus HOM05D007363 ORTHO05D009018 2.2e-34 149.4 149 55.0
PGR042G3583 Punica granatum HOM05D007363 ORTHO05D009018 2.9e-34 149.1 147 54.4
ClCG09G007810 Citrullus lanatus HOM05D007363 ORTHO05D009018 1.4e-33 146.7 149 52.3
SGA_v2.0_scaffold510G52612 Striga asiatica HOM05D007363 ORTHO05D009018 1.4e-33 146.7 140 51.4
unitig_0.g703 Utricularia gibba HOM05D007363 ORTHO05D009018 4.2e-33 145.2 146 54.1
Ah.02g111990 Amaranthus hybridus HOM05D007363 ORTHO05D009018 1.0e-31 140.6 126 54.8
CsaV3_7G027320 Cucumis sativus L. HOM05D007363 ORTHO05D009018 8.7e-31 137.5 142 50.7
Haze_24634 Corylus avellana HOM05D007363 ORTHO05D009018 1.3e-29 133.7 94 70.2
MELO3C015729.2 Cucumis melo HOM05D007363 ORTHO05D009018 1.6e-29 133.3 153 48.4
Zm00001eb077670 Zea mays HOM05D007363 ORTHO05D009018 3.7e-29 132.1 130 52.3
Migut.N02204 Erythranthe guttata HOM05D007363 ORTHO05D009018 6.2e-29 131.3 158 46.8
Sed0008485 Sechium edule HOM05D007363 ORTHO05D009018 1.8e-28 129.8 128 51.6
Os04g0517000 Oryza sativa ssp. japonica HOM05D007363 ORTHO05D009018 2.4e-28 129.4 124 50.0
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 6.9e-28 127.9 67 91.0
MBI10_g08049_MAGBIO Magnolia biondii HOM05D007363 ORTHO05D009018 1.2e-27 127.1 108 56.5
Hund02916 Selenicereus undatus HOM05D004102 ORTHO05D005307 2.2e-26 122.9 123 51.2
Hma1.2p1_0576F.1_g182040 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 8.4e-26 120.9 86 68.6
SEGI_29869 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 1.4e-20 103.6 162 37.7
FAN27G1204 Fragaria x ananassa HOM05D007363 ORTHO05D009018 1.3e-18 97.1 82 61.0
Lsat_1_v5_gn_3_73760 Lactuca sativa HOM05D007363 ORTHO05D009018 6.5e-18 94.7 121 38.8
Lj2P297T63 Lonicera japonica HOM05D007363 ORTHO05D009018 1.4e-17 93.6 97 50.5
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 6.3e-13 78.2 111 40.5
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 4.2e-09 65.5 104 37.5
Lj6P94T4 Lonicera japonica HOM05D007363 ORTHO05D009018 9.4e-09 64.3 62 54.8
Lj5P53T14 Lonicera japonica HOM05D007363 ORTHO05D009018 1.6e-08 63.5 78 44.9
Lj6P297T4 Lonicera japonica HOM05D007363 ORTHO05D009018 2.1e-08 63.2 62 54.8
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 1.0e-07 60.8 115 30.4
Mapoly0090s0021 Marchantia polymorpha HOM05D021038 ORTHO05D009018 1.4e-07 60.5 111 31.5
ATR0414G002 Amborella trichopoda HOM05D007363 ORTHO05D009018 8.8e-07 57.8 142 31.7
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 1.1e-06 57.4 107 31.8
SEGI_25228 Sequoiadendron giganteum HOM05D003750 ORTHO05D004337 5.7e-06 55.1 112 30.4


User provided reference genes

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