Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3490 Capsella rubella HOM05D007662 ORTHO05D009666 1.1e-27 125.9 64 100.0
AL3G53480 Arabidopsis lyrata HOM05D007662 ORTHO05D009666 7.3e-24 113.2 64 89.1
Carub.0003s3492 Capsella rubella HOM05D007662 ORTHO05D009666 2.1e-23 111.7 64 90.6
AT2G20480 Arabidopsis thaliana HOM05D007662 ORTHO05D009666 1.4e-22 109.0 64 85.9
CARHR111030 Cardamine hirsuta HOM05D007662 ORTHO05D009666 5.2e-22 107.1 63 84.1
BcaC06g36736 Brassica carinata HOM05D007662 ORTHO05D009666 3.9e-17 90.9 68 70.6
BolC7t40501H Brassica oleracea HOM05D007662 ORTHO05D009666 3.9e-17 90.9 68 70.6
Sp3g33680 Schrenkiella parvula HOM05D007662 ORTHO05D009666 5.0e-17 90.5 71 70.4
C07p00560 Brassica napus HOM05D007662 ORTHO05D009666 6.6e-17 90.1 68 70.6
Thhalv10002142m.g Eutrema salsugineum HOM05D007662 ORTHO05D009666 1.1e-16 89.4 71 73.2
BraA07t27819Z Brassica rapa HOM05D007662 ORTHO05D009666 1.9e-16 88.6 65 76.9
Aa31LG8G17430 Aethionema arabicum HOM05D007662 ORTHO05D009666 3.3e-16 87.8 57 75.4
Cpa.g.sc119.89 Carica papaya HOM05D007662 ORTHO05D009666 3.3e-16 87.8 59 72.9
A07p00270 Brassica napus HOM05D007662 ORTHO05D009666 4.3e-16 87.4 65 75.4
Prupe.6G011500 Prunus persica HOM05D007662 ORTHO05D009666 2.8e-15 84.7 52 80.8
BcaB08g34910 Brassica carinata HOM05D007662 ORTHO05D009666 3.6e-15 84.3 68 67.6
Nn7g35960 Nelumbo nucifera HOM05D007662 ORTHO05D009666 6.8e-14 80.1 55 72.7
Nitab4.5_0007654g0010 Nicotiana tabacum HOM05D007662 ORTHO05D009666 6.8e-14 80.1 56 66.1
Solyc01g020320.3 Solanum lycopersicum HOM05D007662 ORTHO05D009666 6.8e-14 80.1 45 80.0
Sopen01g015220 Solanum pennellii HOM05D007662 ORTHO05D009666 6.8e-14 80.1 45 80.0
BcaB03g16842 Brassica carinata HOM05D007662 ORTHO05D009666 8.9e-14 79.7 59 69.5
TAR623G1524 Trochodendron aralioides HOM05D007662 ORTHO05D009666 8.9e-14 79.7 41 92.7
Haze_22992 Corylus avellana HOM05D007662 ORTHO05D009666 1.5e-13 79.0 46 84.8
Peaxi162Scf00336g00087 Petunia axillaris HOM05D007662 ORTHO05D009666 1.5e-13 79.0 58 67.2
MD03G1011000 Malus domestica HOM05D007662 ORTHO05D009666 2.0e-13 78.6 56 73.2
PGSC0003DMG400015999 Solanum tuberosum HOM05D007662 ORTHO05D009666 2.0e-13 78.6 49 73.5
Hma1.2p1_0972F.1_g242860 Hydrangea macrophylla HOM05D007662 ORTHO05D009666 2.6e-13 78.2 46 82.6
Cfa009623 Carpinus fangiana HOM05D007662 ORTHO05D009666 3.4e-13 77.8 39 92.3
COL.COLO4_10450 Corchorus olitorius HOM05D007662 ORTHO05D009666 4.4e-13 77.4 63 63.5
Lj1g0001682 Lotus japonicus HOM05D007662 ORTHO05D009666 5.8e-13 77.0 63 63.5
CiPaw.12G007400 Carya illinoinensis HOM05D007662 ORTHO05D009666 7.5e-13 76.6 39 92.3
Cc01_g01030 Coffea canephora HOM05D007662 ORTHO05D009666 7.5e-13 76.6 66 60.6
Atru.chr3.2207 Acer truncatum HOM05D007662 ORTHO05D009666 9.8e-13 76.3 57 68.4
Manes.15G104500 Manihot esculenta HOM05D007662 ORTHO05D009666 9.8e-13 76.3 44 79.5
Phvul.008G106450 Phaseolus vulgaris HOM05D007662 ORTHO05D009666 1.3e-12 75.9 58 69.0
PGR119G1192 Punica granatum HOM05D007662 ORTHO05D009666 1.3e-12 75.9 53 73.6
Glyma.18G180600 Glycine max HOM05D007662 ORTHO05D009666 1.7e-12 75.5 55 65.5
PSO384G2541 Papaver somniferum HOM05D007662 ORTHO05D009666 1.7e-12 75.5 47 76.6
Peaxi162Scf00451g00322 Petunia axillaris HOM05D007662 ORTHO05D009666 1.7e-12 75.5 62 59.7
Lsat_1_v5_gn_6_51400 Lactuca sativa HOM05D007662 ORTHO05D009666 2.2e-12 75.1 75 57.3
PGSC0003DMG400017905 Solanum tuberosum HOM05D007662 ORTHO05D009666 2.2e-12 75.1 49 71.4
C08p42210 Brassica napus HOM05D007662 ORTHO05D009666 2.9e-12 74.7 60 68.3
BolC8t51780H Brassica oleracea HOM05D007662 ORTHO05D009666 2.9e-12 74.7 60 68.3
Nitab4.5_0000488g0050 Nicotiana tabacum HOM05D007662 ORTHO05D009666 2.9e-12 74.7 45 75.6
BcaC07g41215 Brassica carinata HOM05D007662 ORTHO05D009666 4.9e-12 73.9 60 66.7
HanXRQChr02g0056871 Helianthus annuus HOM05D007662 ORTHO05D009666 4.9e-12 73.9 40 87.5
Prupe.2G113800 Prunus persica HOM05D007662 ORTHO05D009666 4.9e-12 73.9 46 80.4
Glyma.07G131900 Glycine max HOM05D007662 ORTHO05D009666 6.4e-12 73.6 39 87.2
Gohir.A08G012100 Gossypium hirsutum HOM05D007662 ORTHO05D009666 6.4e-12 73.6 57 68.4
Gohir.D08G022600 Gossypium hirsutum HOM05D007662 ORTHO05D009666 6.4e-12 73.6 57 68.4
Gorai.004G017900 Gossypium raimondii HOM05D007662 ORTHO05D009666 6.4e-12 73.6 57 68.4
CANSAT54G1122 Cannabis sativa HOM05D007662 ORTHO05D009666 8.3e-12 73.2 61 60.7
GSVIVG01025388001 Vitis vinifera HOM05D007662 ORTHO05D009666 8.3e-12 73.2 60 63.3
A09p58880 Brassica napus HOM05D007662 ORTHO05D009666 1.4e-11 72.4 57 68.4
BraA09t41274Z Brassica rapa HOM05D007662 ORTHO05D009666 1.4e-11 72.4 57 68.4
Duzib168G0137 Durio zibethinus HOM05D007662 ORTHO05D009666 1.4e-11 72.4 56 67.9
Lalb_Chr03g0042221 Lupinus albus HOM05D007662 ORTHO05D009666 1.4e-11 72.4 58 63.8
Rhsim02G0233900 Rhododendron simsii HOM05D007662 ORTHO05D009666 1.4e-11 72.4 54 70.4
Migut.N02119 Erythranthe guttata HOM05D007662 ORTHO05D009666 1.9e-11 72.0 66 62.1
CSS0010518 Camellia sinensis var. sinensis HOM05D007662 ORTHO05D009666 3.2e-11 71.2 54 64.8
Sed0021510 Sechium edule HOM05D007662 ORTHO05D009666 5.4e-11 70.5 60 63.3
Aqoxy1G00152 Aquilegia oxysepala HOM05D007662 ORTHO05D009666 7.0e-11 70.1 51 68.6
Rhsim02G0233800 Rhododendron simsii HOM05D007662 ORTHO05D009666 7.0e-11 70.1 54 68.5
Thecc.09G214700 Theobroma cacao HOM05D007662 ORTHO05D009666 7.0e-11 70.1 48 75.0
Manes.04G126551 Manihot esculenta HOM05D007662 ORTHO05D009666 9.2e-11 69.7 51 70.6
Medtr4g095740 Medicago truncatula HOM05D007662 ORTHO05D009666 9.2e-11 69.7 39 84.6
Sabra01G0007400 Salix brachista HOM05D007662 ORTHO05D009666 9.2e-11 69.7 61 65.6
TWI32G0733 Tripterygium wilfordii HOM05D007662 ORTHO05D009666 9.2e-11 69.7 59 59.3
Potri.001G009501 Populus trichocarpa HOM05D007662 ORTHO05D009666 1.2e-10 69.3 59 64.4
Os09g0446000 Oryza sativa ssp. japonica HOM05D007662 ORTHO05D009666 1.6e-10 68.9 37 83.8
SalBow6G4367 Salvia bowleyana HOM05D007662 ORTHO05D009666 1.6e-10 68.9 63 58.7
SalBow8G2777 Salvia bowleyana HOM05D007662 ORTHO05D009666 1.6e-10 68.9 63 58.7
FAN11G0548 Fragaria x ananassa HOM05D007662 ORTHO05D009666 2.0e-10 68.6 62 59.7
FAN21G0034 Fragaria x ananassa HOM05D007662 ORTHO05D009666 2.0e-10 68.6 62 59.7
FAN25G2111 Fragaria x ananassa HOM05D007662 ORTHO05D009666 2.0e-10 68.6 62 59.7
Zm00001eb314380 Zea mays HOM05D007662 ORTHO05D009666 2.0e-10 68.6 53 67.9
DCAR_024358 Daucus carota HOM05D007662 ORTHO05D009666 2.7e-10 68.2 37 89.2
MBI13_g29646_MAGBIO Magnolia biondii HOM05D007662 ORTHO05D009666 2.7e-10 68.2 56 60.7
Psat3g140280 Pisum sativum HOM05D007662 ORTHO05D009666 2.7e-10 68.2 44 75.0
FAN16G0597 Fragaria x ananassa HOM05D007662 ORTHO05D009666 3.5e-10 67.8 62 59.7
arahy.Tifrunner.gnm1.ann1.MELV6S Arachis hypogaea HOM05D007662 ORTHO05D009666 4.6e-10 67.4 54 63.0
RcHm_v2.0_Chr5g0081401 Rosa chinensis HOM05D007662 ORTHO05D009666 4.6e-10 67.4 45 75.6
ATR0598G132 Amborella trichopoda HOM05D007662 ORTHO05D009666 7.8e-10 66.6 39 76.9
CsaV3_4G023520 Cucumis sativus L. HOM05D007662 ORTHO05D009666 7.8e-10 66.6 56 66.1
Oeu002702.1 Olea europaea HOM05D007662 ORTHO05D009666 7.8e-10 66.6 39 82.1
ECA233G5312 Erigeron canadensis HOM05D007662 ORTHO05D009666 1.0e-09 66.2 38 78.9
Eucgr.B02616 Eucalyptus grandis HOM05D007662 ORTHO05D009666 1.3e-09 65.9 36 88.9
Eucgr.L03549 Eucalyptus grandis HOM05D007662 ORTHO05D009666 1.3e-09 65.9 36 88.9
ClCG02G023850 Citrullus lanatus HOM05D007662 ORTHO05D009666 2.3e-09 65.1 56 62.5
arahy.Tifrunner.gnm1.ann1.0G84UH Arachis hypogaea HOM05D007662 ORTHO05D009666 3.0e-09 64.7 54 61.1
HPP92_019156 Vanilla planifolia HOM05D007662 ORTHO05D009666 3.0e-09 64.7 40 72.5
unitig_8.g3321 Utricularia gibba HOM05D007662 ORTHO05D009666 1.5e-08 62.4 39 74.4
EL10Ac4g10342 Beta vulgaris HOM05D007662 ORTHO05D009666 4.3e-08 60.8 64 50.0
Hund07566 Selenicereus undatus HOM05D007662 ORTHO05D009666 7.3e-08 60.1 38 76.3
SEGI_07868 Sequoiadendron giganteum HOM05D007662 ORTHO05D009666 1.1e-06 56.2 39 66.7


User provided reference genes

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