Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 1.9e-195 685.6 342 100.0
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 1.8e-166 589.3 342 86.5
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 6.1e-162 574.3 352 82.7
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 1.3e-148 530.0 343 79.0
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 3.2e-142 508.8 342 77.2
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 1.4e-137 493.4 342 74.9
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 1.4e-134 483.4 350 71.7
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 2.7e-133 479.2 342 73.1
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 1.9e-126 456.4 328 72.3
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 1.9e-126 456.4 328 72.3
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 8.4e-119 431.0 354 65.3
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 5.4e-118 428.3 342 66.7
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 3.9e-100 369.0 339 56.0
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 5.1e-100 368.6 273 65.6
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 4.3e-99 365.5 235 69.8
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 2.8e-98 362.8 347 57.1
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 1.4e-97 360.5 340 55.3
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 2.4e-97 359.8 343 55.7
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 3.1e-97 359.4 294 61.9
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 4.1e-97 359.0 337 56.1
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.5e-96 357.1 346 54.6
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 2.6e-96 356.3 290 61.4
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 3.4e-96 355.9 268 63.8
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.4e-96 355.9 268 63.4
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 4.5e-96 355.5 338 55.0
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 4.5e-96 355.5 337 54.3
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 5.9e-96 355.1 288 61.1
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 5.9e-96 355.1 283 61.1
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 7.6e-96 354.8 339 53.7
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 1.0e-95 354.4 230 72.6
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 1.3e-95 354.0 285 61.4
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 1.3e-95 354.0 285 61.4
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 1.3e-95 354.0 252 66.3
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.7e-95 353.6 280 62.5
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 3.8e-95 352.4 240 69.6
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 3.8e-95 352.4 244 68.9
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 3.8e-95 352.4 343 54.2
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 8.5e-95 351.3 232 70.7
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 1.1e-94 350.9 255 65.1
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.9e-94 350.1 296 60.8
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.5e-94 348.6 232 69.8
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 7.2e-94 348.2 255 64.7
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 9.3e-94 347.8 280 61.8
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 1.2e-93 347.4 288 61.1
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 1.6e-93 347.1 210 75.2
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 2.1e-93 346.7 240 68.8
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 2.7e-93 346.3 289 59.5
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 3.6e-93 345.9 308 57.5
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 3.6e-93 345.9 214 73.8
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 6.1e-93 345.1 355 52.1
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 1.4e-92 344.0 337 55.5
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 1.4e-92 344.0 212 72.6
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 2.3e-92 343.2 225 69.8
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 3.0e-92 342.8 240 66.2
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 3.0e-92 342.8 271 61.6
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 6.7e-92 341.7 218 72.0
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 8.8e-92 341.3 235 68.9
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 1.5e-91 340.5 241 66.8
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 1.9e-91 340.1 283 58.7
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 1.9e-91 340.1 217 72.4
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 2.5e-91 339.7 338 54.1
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 3.3e-91 339.3 241 65.6
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 3.3e-91 339.3 217 71.0
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 3.3e-91 339.3 238 66.4
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 4.3e-91 339.0 286 57.0
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 5.7e-91 338.6 230 67.8
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 5.7e-91 338.6 270 60.7
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 7.4e-91 338.2 212 72.2
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 1.3e-90 337.4 310 56.1
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 1.3e-90 337.4 215 72.6
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 1.7e-90 337.0 253 62.8
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 2.8e-90 336.3 238 66.0
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 4.8e-90 335.5 286 60.1
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 4.8e-90 335.5 274 61.3
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 8.2e-90 334.7 228 69.7
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 1.4e-89 334.0 231 68.8
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 3.1e-89 332.8 227 68.7
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 3.1e-89 332.8 212 71.2
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 5.3e-89 332.0 306 55.2
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 5.3e-89 332.0 216 71.3
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 9.1e-89 331.3 306 55.2
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.2e-88 330.9 288 56.6
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 1.5e-88 330.5 215 70.2
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 3.4e-88 329.3 265 60.4
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 3.4e-88 329.3 248 61.7
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 4.5e-88 328.9 225 69.3
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 2.9e-87 326.2 304 56.6
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 3.8e-87 325.9 217 69.1
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 3.8e-87 325.9 216 70.4
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 2.5e-86 323.2 221 67.4
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 7.2e-86 321.6 295 56.9
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 9.4e-86 321.2 239 64.0
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.6e-85 320.5 296 55.7
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 1.6e-85 320.5 233 65.7
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 2.1e-85 320.1 178 77.5
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 3.6e-85 319.3 230 67.0
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 3.6e-85 319.3 204 70.6
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 6.1e-85 318.5 215 69.3
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 7.9e-85 318.2 281 59.1
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 7.9e-85 318.2 347 49.0
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 1.0e-84 317.8 325 53.5
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 1.4e-84 317.4 263 60.8
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 1.4e-84 317.4 219 66.7
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 1.4e-84 317.4 228 64.0
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 3.0e-84 316.2 224 68.8
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 8.8e-84 314.7 215 67.0
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.1e-81 307.8 221 66.1
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.8e-74 282.3 297 51.9
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 2.4e-73 280.0 397 40.3
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.9e-70 270.4 197 65.5
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 3.2e-70 269.6 187 68.4
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 4.2e-70 269.2 287 52.3
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.7e-69 266.5 244 56.6
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 4.7e-69 265.8 342 46.8
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.4e-67 259.2 241 54.8
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 5.7e-67 258.8 319 47.0
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 5.7e-67 258.8 178 68.0
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 5.9e-64 248.8 253 51.0
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 1.3e-63 247.7 211 56.9
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 1.8e-60 237.3 126 77.0
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.8e-58 229.9 223 52.0
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.4e-57 227.6 256 48.0
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 7.7e-56 221.9 123 76.4
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 3.8e-55 219.5 165 60.6
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 6.6e-55 218.8 123 78.0
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 6.6e-55 218.8 230 51.3
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 5.2e-52 209.1 179 57.5
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 5.7e-51 205.7 130 71.5
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 2.5e-46 190.3 182 53.8
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 1.3e-42 177.9 160 53.8
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 8.3e-42 175.3 126 57.1
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 9.2e-41 171.8 169 54.4
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 4.0e-36 156.4 206 40.3
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 7.0e-33 145.6 99 67.7
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 3.3e-30 136.7 84 72.6
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.8e-20 104.4 133 46.6
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 2.1e-13 80.9 98 51.0
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.1e-12 78.6 129 41.1
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 2.4e-09 67.4 63 52.4
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.2e-08 65.1 32 84.4


User provided reference genes

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