Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 5.5e-303 1043.5 525 100.0
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 3.9e-240 834.7 518 81.5
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 3.3e-239 831.6 478 88.7
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 7.6e-236 820.5 479 87.7
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 2.4e-221 772.3 478 81.4
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 2.4e-221 772.3 478 81.4
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 2.2e-219 765.8 478 81.0
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 1.4e-218 763.1 478 80.8
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 1.4e-218 763.1 478 80.8
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 3.5e-217 758.4 478 82.0
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 2.3e-216 755.7 478 80.5
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 1.1e-191 673.7 478 73.4
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 5.5e-170 601.7 478 66.1
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 2.6e-135 486.5 531 53.9
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 1.3e-134 484.2 483 56.5
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 7.0e-133 478.4 483 55.5
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 2.5e-130 469.9 483 54.7
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 8.1e-129 464.9 486 54.1
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 1.5e-127 460.7 487 53.8
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 2.6e-127 459.9 271 86.0
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 4.4e-127 459.1 484 52.9
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 5.8e-127 458.8 486 54.1
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 4.9e-126 455.7 513 52.0
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 6.4e-126 455.3 528 49.4
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 1.9e-125 453.8 484 53.7
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 4.6e-124 449.1 483 50.9
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 1.4e-120 437.6 484 51.0
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 3.1e-120 436.4 485 51.8
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 2.9e-118 429.9 481 52.4
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 9.2e-117 424.9 485 50.3
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 1.6e-116 424.1 483 51.3
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 1.1e-114 417.9 484 51.9
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 3.4e-111 406.4 486 50.6
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 7.6e-111 405.2 484 48.8
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 1.4e-109 401.0 484 50.4
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 1.9e-109 400.6 484 49.4
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 2.7e-108 396.7 483 48.2
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 1.3e-107 394.4 483 48.0
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 5.1e-107 392.5 484 48.8
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 8.7e-107 391.7 484 49.6
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 4.3e-106 389.4 481 47.6
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 7.3e-106 388.7 481 47.6
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 1.6e-105 387.5 483 48.2
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 6.2e-105 385.6 484 48.6
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 4.0e-104 382.9 529 45.9
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 6.9e-104 382.1 485 49.7
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 2.0e-103 380.6 485 47.2
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 1.3e-102 377.9 494 46.8
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 1.7e-102 377.5 491 47.3
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 4.9e-102 375.9 483 46.4
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 4.9e-102 375.9 483 46.2
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 1.1e-101 374.8 484 46.7
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 6.0e-100 369.0 484 48.1
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 1.0e-99 368.2 485 47.6
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 1.0e-99 368.2 482 45.9
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 2.3e-99 367.1 483 44.7
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 3.9e-99 366.3 499 45.5
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 8.7e-99 365.2 485 46.0
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 1.1e-98 364.8 496 45.4
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 1.1e-98 364.8 485 46.6
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 1.1e-98 364.8 481 44.5
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 1.1e-98 364.8 432 49.1
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 3.3e-98 363.2 483 45.8
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 4.3e-98 362.8 477 46.5
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 1.3e-97 361.3 477 46.5
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 1.3e-97 361.3 561 43.5
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 2.8e-97 360.1 481 45.3
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 5.8e-95 352.4 488 44.7
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 7.6e-95 352.1 485 44.5
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 3.2e-93 346.7 495 45.7
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 4.3e-90 336.3 396 50.0
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 2.1e-89 334.0 470 45.5
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 1.5e-87 327.8 481 41.6
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 1.0e-86 325.1 483 42.7
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 1.5e-82 311.2 576 37.8
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 1.3e-81 308.1 393 47.3
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 3.1e-80 303.5 481 41.8
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 1.3e-78 298.1 408 45.8
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 2.5e-77 293.9 329 50.5
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 2.7e-76 290.4 446 43.0
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 2.3e-75 287.3 479 39.9
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 2.5e-74 283.9 318 53.1
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 1.3e-73 281.6 487 40.2
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 8.5e-70 268.9 282 53.2
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 1.4e-64 251.5 321 48.3
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 2.4e-64 250.8 334 44.6
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 2.6e-58 230.7 279 50.5
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 7.5e-50 202.6 241 50.2
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 2.2e-49 201.1 226 51.8
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 7.7e-47 192.6 336 37.8
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 7.5e-42 176.0 226 45.1
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 1.1e-40 172.2 101 82.2
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 5.7e-34 149.8 167 51.5
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 3.1e-32 144.1 320 35.3
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 4.5e-31 140.2 265 38.9
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 1.7e-30 138.3 511 25.0
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 2.3e-30 137.9 484 29.1
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 8.3e-25 119.4 152 48.7
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 1.4e-24 118.6 171 47.4
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 3.5e-23 114.0 136 49.3
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 3.3e-21 107.5 152 41.4
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 2.6e-18 97.8 138 46.4
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 5.8e-18 96.7 106 51.9
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 9.8e-18 95.9 122 49.2
Zm00001eb133830 Zea mays HOM05D006061 ORTHO05D007450 4.1e-16 90.5 163 38.0
CBR_g31999 Chara braunii HOM05D006061 ORTHO05D007450 2.7e-15 87.8 368 26.1
PSO675G3076 Papaver somniferum HOM05D006061 ORTHO05D007450 2.5e-13 81.3 334 27.5
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 2.1e-12 78.2 137 38.0
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 4.4e-10 70.5 124 40.3
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 1.9e-08 65.1 98 43.9
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 5.4e-08 63.5 133 33.1
Os12g0228900 Oryza sativa ssp. japonica HOM05D006061 ORTHO05D007450 7.1e-08 63.2 89 42.7
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 1.6e-07 62.0 78 47.4


User provided reference genes

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