Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 0.0e+00 1207.2 711 100.0
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 0.0e+00 1075.5 711 88.5
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 5.0e-307 1057.4 709 86.9
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 6.5e-299 1030.4 715 85.0
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 2.6e-287 991.9 718 80.1
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 1.4e-285 986.1 724 80.2
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 9.1e-285 983.4 717 79.5
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 2.7e-284 981.9 718 79.4
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 1.3e-283 979.5 717 79.4
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 1.7e-283 979.2 718 82.3
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 4.7e-265 917.9 721 80.0
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 8.3e-254 880.6 713 74.9
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 4.9e-230 801.6 606 78.2
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 1.5e-202 710.3 726 64.0
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 2.2e-198 696.4 715 61.8
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 5.0e-198 695.3 711 60.8
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 6.1e-196 688.3 719 61.3
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 7.4e-194 681.4 712 59.8
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 4.8e-193 678.7 713 60.0
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 4.8e-193 678.7 717 60.3
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 9.1e-192 674.5 724 59.0
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 9.1e-192 674.5 719 59.2
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 4.5e-191 672.2 712 60.0
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 6.5e-190 668.3 712 59.4
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.4e-189 667.2 714 59.4
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 9.4e-189 664.5 711 59.6
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.2e-188 664.1 724 59.3
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.7e-188 662.1 708 59.2
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 1.0e-187 661.0 726 58.0
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 3.9e-187 659.1 716 59.4
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 5.1e-187 658.7 712 59.7
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 1.5e-186 657.1 724 58.6
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 2.6e-186 656.4 717 58.7
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 5.7e-186 655.2 725 58.6
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.4e-186 654.8 717 58.7
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 7.4e-186 654.8 745 59.5
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.7e-185 653.7 709 58.1
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 3.7e-185 652.5 736 57.7
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.4e-184 650.6 719 58.6
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 1.8e-184 650.2 722 58.3
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 2.4e-184 649.8 712 57.6
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 3.5e-183 646.0 747 56.2
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 4.5e-183 645.6 726 58.0
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 1.0e-182 644.4 725 57.2
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 2.2e-182 643.3 717 58.6
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 2.5e-181 639.8 718 58.4
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 5.5e-181 638.6 712 57.7
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 7.2e-181 638.3 561 67.2
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 6.1e-180 635.2 715 56.4
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 1.0e-179 634.4 724 57.0
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.3e-178 629.4 721 57.1
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 4.1e-176 622.5 721 55.2
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 7.0e-176 621.7 722 56.8
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 2.0e-175 620.2 575 65.6
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 2.6e-175 619.8 720 58.2
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.3e-174 617.5 746 56.8
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 2.2e-174 616.7 716 58.8
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.5e-173 614.0 736 55.7
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 1.5e-173 614.0 764 55.8
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 4.7e-172 609.0 707 55.7
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 1.3e-169 600.9 714 56.3
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 2.2e-169 600.1 725 54.3
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 2.2e-169 600.1 723 55.5
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 6.3e-169 598.6 705 56.2
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 2.7e-167 593.2 664 58.1
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 1.0e-166 591.3 714 53.9
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 1.5e-165 587.4 730 53.2
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 5.5e-165 585.5 737 54.3
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 1.2e-164 584.3 718 51.9
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 2.7e-164 583.2 716 54.6
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 2.7e-164 583.2 695 55.3
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 8.0e-164 581.6 735 55.4
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 3.0e-163 579.7 731 54.3
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 8.8e-163 578.2 737 54.3
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 1.3e-161 574.3 717 54.8
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 2.4e-160 570.1 745 51.1
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 2.4e-160 570.1 716 54.2
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 5.4e-160 568.9 715 55.8
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 3.5e-159 566.2 737 55.1
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 5.9e-159 565.5 443 71.1
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 1.3e-158 564.3 735 54.6
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 2.8e-156 556.6 710 50.6
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.0e-155 554.7 715 53.0
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 1.4e-155 554.3 710 52.3
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 1.4e-155 554.3 717 55.4
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.3e-155 553.5 721 54.4
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 3.0e-155 553.1 740 51.9
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 3.0e-155 553.1 721 54.2
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 3.0e-155 553.1 705 50.6
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 4.0e-155 552.7 443 68.8
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 1.7e-153 547.4 736 54.1
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 1.1e-152 544.7 744 52.2
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 1.1e-152 544.7 664 55.1
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.0e-151 540.4 737 53.5
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.7e-151 540.0 699 51.4
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 5.6e-149 532.3 704 51.7
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 9.5e-149 531.6 728 54.7
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 6.8e-147 525.4 709 50.8
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 8.9e-147 525.0 762 50.9
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 4.6e-143 512.7 759 51.0
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 3.0e-142 510.0 380 73.7
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.4e-139 501.1 731 51.0
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 6.8e-139 498.8 710 48.0
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.1e-136 491.5 805 46.3
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 3.2e-128 463.4 726 45.7
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.0e-126 458.4 689 49.9
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 1.2e-124 451.4 700 46.4
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 8.1e-116 422.2 403 62.0
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 1.3e-105 388.3 542 49.6
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 6.2e-100 369.4 726 40.1
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.3e-97 361.7 512 50.4
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.1e-96 358.6 512 50.2
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 1.3e-86 325.1 236 76.7
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.7e-84 317.0 217 80.2
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.7e-81 308.1 231 73.2
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.2e-74 285.4 219 73.1
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 5.0e-73 280.0 200 77.5
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 5.0e-73 280.0 200 77.5
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 7.0e-67 259.6 472 40.3
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 4.5e-66 256.9 173 80.3
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 2.9e-65 254.2 172 79.7
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 7.5e-61 239.6 448 43.5
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 1.7e-60 238.4 447 42.5
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 7.0e-59 233.0 456 37.3
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 3.8e-57 227.3 460 46.3
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 1.1e-48 199.1 396 39.4
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 3.0e-46 191.0 472 37.7
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 8.8e-46 189.5 125 82.4
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 8.3e-36 156.4 422 35.1
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 1.1e-35 156.0 243 46.1
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 3.2e-35 154.5 201 52.2
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 5.0e-33 147.1 297 42.1
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 2.1e-31 141.7 86 88.4
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 6.4e-28 130.2 105 65.7
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 2.4e-27 128.3 287 35.9
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 1.1e-22 112.8 449 33.4
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.4e-22 112.5 75 81.3
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.4e-22 112.5 75 81.3
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.8e-22 112.1 70 82.9
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 8.9e-22 109.8 72 79.2
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 2.6e-21 108.2 87 71.3
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 6.4e-20 103.6 70 81.4
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 6.4e-20 103.6 195 44.6
A07p00700 Brassica napus HOM05D004485 ORTHO05D040257 8.6e-17 93.2 89 66.3
BraA07t27869Z Brassica rapa HOM05D004485 ORTHO05D040257 5.6e-16 90.5 89 65.2
CARHR266410 Cardamine hirsuta HOM05D004485 ORTHO05D005485 8.1e-15 86.7 126 52.4
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 5.8e-13 80.5 65 61.5
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 7.6e-13 80.1 450 25.1
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 5.4e-11 73.9 481 25.6
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 1.2e-10 72.8 328 27.1
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 1.6e-10 72.4 328 27.1
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 2.1e-10 72.0 328 27.1
BraA07t27870Z Brassica rapa HOM05D004485 ORTHO05D005485 1.0e-09 69.7 64 71.9
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 3.0e-09 68.2 331 26.6
Migut.D01558 Erythranthe guttata HOM05D004897 ORTHO05D005928 1.1e-08 66.2 329 26.7
Ciclev10007731m.g Citrus clementina HOM05D004897 ORTHO05D005928 1.9e-08 65.5 346 27.5
Eucgr.B00942 Eucalyptus grandis HOM05D004897 ORTHO05D005928 2.5e-08 65.1 330 26.4
Actinidia18901 Actinidia chinensis HOM05D004897 ORTHO05D005928 3.3e-08 64.7 347 25.4
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 3.3e-08 64.7 332 26.2
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 3.3e-08 64.7 311 28.9
Duzib084G0246 Durio zibethinus HOM05D004897 ORTHO05D005928 4.3e-08 64.3 328 26.2
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 7.3e-08 63.5 50 74.0
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 9.6e-08 63.2 329 24.9
SalBow1G4576 Salvia bowleyana HOM05D004897 ORTHO05D005928 9.6e-08 63.2 326 26.4
Thecc.03G053700 Theobroma cacao HOM05D004897 ORTHO05D005928 1.2e-07 62.8 328 26.2
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 1.6e-07 62.4 326 24.8
Oeu014377.2 Olea europaea HOM05D004897 ORTHO05D005928 1.6e-07 62.4 332 25.9
A08p30510 Brassica napus HOM05D004897 ORTHO05D005928 2.1e-07 62.0 329 26.4
CSS0030961 Camellia sinensis var. sinensis HOM05D004897 ORTHO05D005928 2.8e-07 61.6 327 25.4
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 2.8e-07 61.6 329 24.0
Medtr8g107060 Medicago truncatula HOM05D004897 ORTHO05D005928 4.7e-07 60.8 329 25.2
Lsat_1_v5_gn_8_144040 Lactuca sativa HOM05D004897 ORTHO05D005928 8.1e-07 60.1 325 24.0
Thhalv10007004m.g Eutrema salsugineum HOM05D004897 ORTHO05D005928 1.1e-06 59.7 341 24.6
Sabra15G0057300 Salix brachista HOM05D004897 ORTHO05D005928 1.1e-06 59.7 327 26.3
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 1.8e-06 58.9 326 25.2
BraA06t24553Z Brassica rapa HOM05D004897 ORTHO05D005928 2.4e-06 58.5 341 25.2
DCAR_014009 Daucus carota HOM05D004897 ORTHO05D005928 2.4e-06 58.5 340 22.1
CDE05G2998 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 3.1e-06 58.2 329 25.2
Psat7g002120 Pisum sativum HOM05D004897 ORTHO05D005928 3.1e-06 58.2 331 25.1
SGA_v2.0_scaffold168G38498 Striga asiatica HOM05D004897 ORTHO05D005928 3.1e-06 58.2 326 26.1
TWI60G0918 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 4.0e-06 57.8 326 24.2
Cfa019677 Carpinus fangiana HOM05D004897 ORTHO05D005928 9.0e-06 56.6 328 26.2
Manes.14G170400 Manihot esculenta HOM05D004897 ORTHO05D005928 9.0e-06 56.6 285 27.7
Nn4g24194 Nelumbo nucifera HOM05D004897 ORTHO05D005928 9.0e-06 56.6 342 26.0
Prupe.5G232100 Prunus persica HOM05D004897 ORTHO05D005928 9.0e-06 56.6 326 25.5


User provided reference genes

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