Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 1.7e-309 1065.1 520 100.0
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 7.8e-302 1039.6 521 97.1
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 1.0e-301 1039.3 521 97.1
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 3.3e-300 1034.2 521 96.7
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 9.6e-300 1032.7 521 96.0
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 9.9e-297 1022.7 521 94.6
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 4.0e-290 1000.7 521 92.1
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 9.0e-290 999.6 521 91.9
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 9.0e-290 999.6 521 91.9
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 1.5e-289 998.8 521 91.9
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 4.5e-289 997.3 521 92.1
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 7.6e-289 996.5 521 91.6
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 3.8e-288 994.2 521 91.4
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 2.1e-286 988.4 521 91.7
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 2.1e-286 988.4 521 91.7
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 1.0e-285 986.1 520 90.8
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 3.9e-285 984.2 520 91.0
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 3.9e-285 984.2 520 91.0
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 6.7e-285 983.4 522 91.6
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 1.3e-283 979.2 520 90.2
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 1.6e-283 978.8 520 90.2
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 3.1e-282 974.5 525 90.7
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 8.4e-280 966.5 520 88.3
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 2.9e-272 941.4 520 85.6
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 3.6e-270 934.5 520 84.4
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 1.0e-264 916.4 520 82.9
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 5.0e-264 914.1 520 83.1
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 6.5e-264 913.7 520 82.9
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 2.1e-262 908.7 518 82.4
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 1.0e-261 906.4 520 82.3
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 1.0e-261 906.4 518 82.2
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 8.8e-261 903.3 517 82.8
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 1.5e-260 902.5 520 81.7
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 2.0e-260 902.1 516 82.4
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 1.7e-259 899.0 520 81.0
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.4e-258 896.0 519 81.3
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.4e-258 895.2 519 80.9
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 2.4e-258 895.2 518 80.7
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.3e-258 894.0 520 81.0
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 1.5e-257 892.5 520 81.0
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 1.5e-257 892.5 520 81.3
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.0e-257 892.1 528 80.5
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 1.0e-256 889.8 520 79.2
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.0e-256 889.8 528 80.5
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.0e-256 889.8 528 80.7
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 5.0e-256 887.5 528 80.5
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 6.5e-256 887.1 518 80.3
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 1.1e-255 886.3 516 81.4
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 2.5e-255 885.2 521 80.6
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 2.5e-255 885.2 513 81.5
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 5.5e-255 884.0 518 80.5
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 7.2e-255 883.6 516 80.4
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 9.4e-255 883.2 544 76.8
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.6e-254 882.5 520 80.4
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 1.6e-254 882.5 520 80.4
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.6e-254 881.3 520 80.4
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 4.7e-254 880.9 518 80.1
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 6.1e-254 880.6 544 77.0
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 1.4e-253 879.4 519 79.2
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 2.3e-253 878.6 518 79.2
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 3.0e-253 878.2 520 79.0
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 1.5e-252 875.9 521 79.8
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 9.7e-252 873.2 510 81.4
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 9.7e-252 873.2 520 78.7
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.8e-251 871.7 530 78.7
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 8.2e-251 870.2 520 78.7
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 2.4e-250 868.6 520 79.0
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 1.6e-249 865.9 520 77.7
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 2.9e-248 861.7 521 77.4
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 2.9e-248 861.7 521 77.5
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 1.9e-247 859.0 520 78.7
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 4.2e-247 857.8 520 77.7
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 2.1e-246 855.5 521 76.8
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 2.7e-246 855.1 517 78.5
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 3.6e-246 854.7 521 77.4
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 8.0e-246 853.6 520 77.3
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.4e-245 852.8 518 77.2
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 1.8e-245 852.4 520 76.3
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 3.0e-245 851.7 520 78.3
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 6.8e-245 850.5 520 77.3
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 8.8e-245 850.1 520 77.9
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.4e-244 848.2 554 74.7
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 4.4e-244 847.8 520 77.7
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 4.4e-244 847.8 526 76.0
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 9.7e-244 846.7 518 77.6
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 3.7e-243 844.7 521 77.5
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 1.1e-242 843.2 514 76.5
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 1.1e-242 843.2 520 77.3
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 3.1e-242 841.6 516 77.1
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 4.1e-242 841.3 517 77.4
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 7.0e-242 840.5 520 77.1
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 9.1e-242 840.1 520 77.1
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 2.0e-241 839.0 519 75.1
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 2.7e-241 838.6 522 76.8
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 4.5e-241 837.8 466 84.5
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 5.9e-241 837.4 492 79.5
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.7e-240 835.9 520 77.1
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 8.5e-240 833.6 522 76.8
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 8.5e-240 833.6 520 77.1
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 1.8e-237 825.9 524 74.8
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 3.0e-237 825.1 517 74.5
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 6.8e-237 823.9 520 76.3
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 3.7e-235 818.1 520 75.0
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 4.8e-235 817.8 464 83.0
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 9.1e-234 813.5 519 73.8
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 1.6e-233 812.8 519 73.2
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 2.0e-233 812.4 530 73.6
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 3.5e-233 811.6 521 73.3
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 3.5e-233 811.6 520 74.0
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 1.7e-232 809.3 520 73.8
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 2.9e-232 808.5 466 82.4
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 1.1e-231 806.6 518 75.7
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 2.1e-230 802.4 519 72.6
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 3.6e-230 801.6 472 79.7
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 4.7e-230 801.2 467 79.9
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 2.3e-229 798.9 490 77.1
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 3.0e-229 798.5 515 73.8
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 6.8e-229 797.3 476 77.5
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 2.0e-228 795.8 516 74.4
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 9.8e-228 793.5 516 73.8
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 2.4e-226 788.9 553 69.6
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 3.2e-226 788.5 520 73.5
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 1.6e-225 786.2 550 70.5
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 2.9e-224 781.9 561 70.8
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 5.0e-224 781.2 469 78.7
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 8.6e-224 780.4 516 71.9
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.2e-222 776.5 470 77.2
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.8e-221 772.7 573 67.0
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 3.1e-221 771.9 520 71.2
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 1.5e-220 769.6 519 71.1
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 3.4e-220 768.5 520 70.8
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 3.7e-219 765.0 520 70.8
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 7.0e-218 760.8 520 70.4
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 9.2e-218 760.4 518 69.9
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 1.9e-215 752.7 520 71.0
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 6.2e-214 747.7 520 70.0
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 2.9e-211 738.8 520 69.0
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 3.0e-208 728.8 540 65.9
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 1.6e-201 706.4 519 66.7
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 8.6e-200 700.7 520 65.6
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 2.1e-198 696.0 503 70.6
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 5.1e-192 674.9 382 82.5
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 3.4e-188 662.1 382 81.2
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 4.4e-188 661.8 380 81.1
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 1.6e-185 653.3 561 60.2
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 3.9e-184 648.7 500 63.4
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 5.3e-181 638.3 480 65.8
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 3.7e-174 615.5 486 61.3
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 9.3e-170 600.9 446 62.6
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 6.7e-160 568.2 293 92.5
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 1.3e-155 553.9 472 57.4
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 2.0e-151 540.0 500 54.0
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 6.7e-144 515.0 352 69.9
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 1.2e-132 477.6 286 78.3
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.7e-131 473.8 291 76.3
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 4.4e-127 459.1 289 76.1
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 7.5e-127 458.4 265 77.0
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 3.1e-125 453.0 288 75.3
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 8.6e-107 391.7 246 74.8
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 7.5e-103 378.6 244 75.0
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.6e-79 300.4 204 70.6
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 1.8e-56 224.6 132 79.5
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 1.2e-55 221.9 414 34.3
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 1.0e-54 218.8 472 32.0
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.3e-40 169.9 203 49.3
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 2.6e-39 167.5 134 57.5
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 1.5e-34 151.8 109 66.1
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 7.9e-28 129.4 86 73.3
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 3.2e-21 107.5 58 82.8
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.6e-20 104.0 143 46.9
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 2.3e-19 101.3 60 76.7
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 1.5e-18 98.6 156 35.9
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.6e-12 78.6 173 35.3
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 7.7e-07 59.7 37 75.7
TPR.G21382 Trifolium pratense HOM05D003954 ORTHO05D004627 7.7e-07 59.7 55 56.4
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 1.7e-06 58.5 47 59.6


User provided reference genes

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