Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 1.5e-68 262.7 132 100.0
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 5.1e-64 247.7 132 93.9
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 1.5e-63 246.1 132 93.2
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 4.8e-62 241.1 132 89.4
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 6.9e-61 237.3 133 89.5
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 9.0e-61 236.9 132 87.9
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 1.5e-60 236.1 132 90.2
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 4.5e-60 234.6 132 87.1
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 4.5e-60 234.6 132 87.1
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 4.5e-60 234.6 142 83.8
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 9.9e-60 233.4 132 88.6
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 1.3e-59 233.0 133 88.7
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 4.9e-59 231.1 133 86.5
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 2.4e-58 228.8 133 85.7
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 3.5e-57 224.9 132 84.1
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 6.0e-57 224.2 132 82.6
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 7.9e-57 223.8 142 81.7
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 3.9e-56 221.5 133 85.0
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 5.1e-56 221.1 133 85.7
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 4.3e-55 218.0 130 83.1
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 5.6e-55 217.6 132 83.3
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.4e-53 213.0 114 91.2
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 3.8e-51 204.9 117 87.2
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 8.4e-51 203.8 132 79.5
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 1.1e-45 186.8 135 72.6
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 1.4e-45 186.4 134 70.9
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 2.5e-42 175.6 134 68.7
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 1.6e-41 172.9 140 65.7
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 6.0e-41 171.0 146 62.3
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.3e-40 169.1 139 64.0
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 6.7e-40 167.5 134 65.7
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 6.7e-40 167.5 134 67.9
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 1.1e-39 166.8 139 66.2
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.5e-39 166.4 139 63.3
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 1.9e-39 166.0 138 65.2
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 4.3e-39 164.9 139 64.7
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 4.3e-39 164.9 141 63.8
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 7.4e-39 164.1 140 64.3
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 7.4e-39 164.1 135 66.7
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 1.1e-37 160.2 115 72.2
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 1.4e-37 159.8 136 65.4
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 2.4e-37 159.1 136 68.4
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 4.1e-37 158.3 134 64.9
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 5.3e-37 157.9 140 62.1
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 5.9e-36 154.5 137 64.2
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 7.6e-36 154.1 120 66.7
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 1.0e-35 153.7 139 59.7
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 1.3e-35 153.3 136 64.7
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 1.9e-34 149.4 136 60.3
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 2.5e-34 149.1 120 66.7
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 2.5e-34 149.1 136 61.0
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 3.2e-34 148.7 142 57.0
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 5.5e-34 147.9 136 59.6
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 7.2e-34 147.5 147 58.5
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 9.3e-34 147.1 135 55.6
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.2e-33 146.7 146 57.5
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 2.1e-33 146.0 121 66.9
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 3.6e-33 145.2 134 61.2
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 6.1e-33 144.4 143 56.6
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 6.1e-33 144.4 138 58.0
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 7.9e-33 144.1 139 59.7
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 1.8e-32 142.9 118 66.1
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 1.8e-32 142.9 135 63.0
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.3e-32 142.5 147 55.8
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 2.3e-32 142.5 143 55.9
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 2.3e-32 142.5 117 65.8
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 3.0e-32 142.1 138 61.6
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 1.1e-31 140.2 143 59.4
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.1e-31 140.2 134 60.4
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 5.7e-31 137.9 131 58.0
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 7.4e-31 137.5 143 55.2
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 7.4e-31 137.5 124 62.9
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 9.7e-31 137.1 133 60.2
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 9.7e-31 137.1 137 54.7
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 1.3e-30 136.7 119 64.7
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 1.7e-30 136.3 142 57.7
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 2.8e-30 135.6 127 60.6
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 2.8e-30 135.6 113 62.8
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 3.7e-30 135.2 127 55.9
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 6.3e-30 134.4 143 57.3
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 1.8e-29 132.9 159 50.3
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 2.4e-29 132.5 134 56.7
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 4.1e-29 131.7 183 46.4
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 5.3e-29 131.3 153 51.0
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 6.9e-29 131.0 143 53.8
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 1.5e-28 129.8 132 51.5
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 1.5e-28 129.8 182 45.1
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 2.0e-28 129.4 156 49.4
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 2.6e-28 129.0 133 54.1
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 3.4e-28 128.6 115 60.9
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 3.4e-28 128.6 113 60.2
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 5.9e-28 127.9 133 52.6
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 5.9e-28 127.9 137 51.1
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.0e-27 127.1 166 51.2
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 1.3e-27 126.7 128 53.1
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 2.2e-27 125.9 159 49.1
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 2.9e-27 125.6 150 48.0
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 3.8e-27 125.2 166 50.6
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 3.8e-27 125.2 166 50.6
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 6.5e-27 124.4 143 51.7
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 1.1e-26 123.6 138 54.3
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 1.4e-26 123.2 143 51.0
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 3.2e-26 122.1 146 50.7
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 4.2e-26 121.7 132 50.8
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 7.2e-26 120.9 128 51.6
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 1.2e-25 120.2 122 52.5
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 2.7e-25 119.0 156 50.0
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 2.7e-25 119.0 126 54.8
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 4.7e-25 118.2 150 50.0
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 6.1e-25 117.9 136 51.5
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 7.9e-25 117.5 161 47.8
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 7.9e-25 117.5 119 55.5
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 7.9e-25 117.5 136 52.2
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 1.0e-24 117.1 112 54.5
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 1.4e-24 116.7 128 53.9
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 1.8e-24 116.3 132 53.0
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 1.8e-24 116.3 141 48.9
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 1.8e-24 116.3 119 56.3
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 3.9e-24 115.2 131 53.4
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 3.9e-24 115.2 119 54.6
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 8.8e-24 114.0 156 44.2
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 1.1e-23 113.6 139 49.6
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 1.5e-23 113.2 127 52.0
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 2.0e-23 112.8 134 47.8
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 2.6e-23 112.5 143 47.6
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 3.3e-23 112.1 122 51.6
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 4.4e-23 111.7 117 52.1
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 9.7e-23 110.5 128 50.0
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 9.7e-23 110.5 126 53.2
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 1.3e-22 110.2 133 51.1
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 1.7e-22 109.8 131 50.4
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 2.2e-22 109.4 153 44.4
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.1e-21 107.1 131 46.6
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 1.1e-21 107.1 133 48.9
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 1.5e-20 103.2 127 48.0
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 3.4e-20 102.1 129 48.1
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 3.4e-20 102.1 111 50.5
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 5.5e-18 94.7 140 45.7
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 1.6e-17 93.2 156 41.7
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 2.0e-15 86.3 92 54.3
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 7.4e-15 84.3 153 38.6
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 1.3e-14 83.6 113 45.1
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 1.3e-14 83.6 183 33.9
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 2.2e-14 82.8 88 48.9
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 1.1e-13 80.5 65 56.9
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 1.1e-13 80.5 174 34.5
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 4.1e-13 78.6 104 51.0
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 2.6e-12 75.9 106 41.5
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 2.5e-10 69.3 100 46.0
AUR62033229 Chenopodium quinoa HOM05D004757 ORTHO05D005743 4.4e-07 58.5 88 45.5
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 4.4e-07 58.5 98 40.8
AUR62021312 Chenopodium quinoa HOM05D004757 ORTHO05D005743 2.8e-06 55.8 93 45.2


User provided reference genes

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