Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 0.0e+00 1624.8 806 100.0
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 0.0e+00 1550.0 806 94.7
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 0.0e+00 1537.7 806 93.9
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 0.0e+00 1486.1 811 90.9
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 0.0e+00 1486.1 806 90.3
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 0.0e+00 1476.1 806 90.4
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 0.0e+00 1456.8 807 88.4
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 0.0e+00 1454.9 807 88.2
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 0.0e+00 1454.1 807 88.2
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 0.0e+00 1444.5 807 88.0
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 0.0e+00 1442.6 815 87.4
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 0.0e+00 1365.1 807 84.1
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 0.0e+00 1277.3 815 78.3
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 0.0e+00 1203.0 813 72.4
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 4.5e-304 1047.7 822 63.0
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 2.9e-303 1045.0 825 63.5
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 2.1e-301 1038.9 823 63.7
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 3.3e-299 1031.6 825 62.8
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 4.8e-298 1027.7 823 63.4
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 1.8e-297 1025.8 825 62.3
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 1.8e-297 1025.8 825 62.3
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 1.8e-297 1025.8 820 62.7
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 6.9e-297 1023.8 823 62.8
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 2.2e-295 1018.8 826 62.0
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 8.7e-292 1006.9 827 62.0
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 8.2e-290 1000.3 822 61.4
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 4.1e-289 998.0 822 61.2
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 2.7e-285 985.3 829 59.3
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 6.7e-284 980.7 821 60.0
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 1.1e-283 979.9 885 57.2
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 5.7e-283 977.6 820 59.9
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 1.7e-282 976.1 824 58.9
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 4.8e-282 974.5 821 59.2
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 2.6e-280 968.8 828 58.2
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 1.0e-279 966.8 822 59.1
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 1.7e-279 966.1 792 61.9
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 1.4e-278 963.0 825 58.9
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 3.2e-278 961.8 819 58.9
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 4.2e-278 961.4 825 58.8
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 5.5e-278 961.1 818 58.9
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 5.5e-278 961.1 819 59.8
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 1.6e-277 959.5 819 59.5
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 1.6e-277 959.5 819 58.9
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 1.8e-273 946.0 822 56.7
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 1.8e-273 946.0 820 57.9
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 4.5e-272 941.4 821 59.1
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 2.2e-271 939.1 820 58.4
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 8.5e-271 937.2 819 58.5
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.5e-270 935.6 822 57.9
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 2.5e-270 935.6 821 57.5
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 4.7e-269 931.4 823 57.8
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 1.0e-268 930.2 822 56.7
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 1.8e-268 929.5 826 57.1
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 1.5e-267 926.4 828 58.1
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 4.4e-267 924.9 863 55.5
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 7.4e-267 924.1 824 57.9
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 9.7e-267 923.7 821 57.1
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 9.7e-267 923.7 823 56.1
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 1.3e-266 923.3 815 55.3
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.2e-266 922.5 823 57.7
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 4.8e-266 921.4 850 56.6
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 2.9e-263 912.1 821 56.5
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 6.5e-263 911.0 817 56.8
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 1.1e-262 910.2 817 56.5
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 2.5e-262 909.1 821 57.1
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 3.2e-262 908.7 826 57.5
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 9.4e-262 907.1 817 56.8
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 1.2e-261 906.7 825 56.5
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 1.0e-260 903.7 817 55.6
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 1.8e-260 902.9 822 55.5
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 1.5e-259 899.8 825 56.1
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 2.6e-259 899.0 818 55.3
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 3.4e-259 898.7 837 56.9
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 4.4e-259 898.3 820 55.0
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 5.7e-259 897.9 886 54.0
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 9.7e-259 897.1 809 56.5
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 8.3e-258 894.0 821 56.6
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 1.4e-257 893.3 818 55.9
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 5.3e-257 891.3 819 56.5
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 2.7e-256 889.0 825 55.4
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 5.9e-256 887.9 821 56.3
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 3.2e-254 882.1 821 56.6
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 8.0e-253 877.5 817 55.4
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 1.2e-251 873.6 822 56.0
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 2.2e-250 869.4 832 54.1
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 3.4e-243 845.5 812 55.3
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 7.5e-243 844.3 843 54.7
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 1.8e-241 839.7 812 55.0
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 8.6e-239 830.9 814 52.3
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 2.0e-235 819.7 812 59.7
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 6.4e-234 814.7 816 51.2
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 5.2e-228 795.0 817 51.5
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 4.1e-225 785.4 590 65.6
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 2.1e-224 783.1 829 50.5
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 2.3e-223 779.6 821 49.1
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 9.5e-222 774.2 833 49.7
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 1.6e-221 773.5 823 48.6
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 4.4e-219 765.4 820 49.5
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 7.6e-219 764.6 630 58.7
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 8.3e-218 761.1 815 52.5
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 3.2e-217 759.2 819 49.8
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 1.2e-208 730.7 735 52.7
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 3.2e-201 706.1 565 61.6
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 4.8e-197 692.2 666 54.2
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 1.1e-196 691.0 810 49.9
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 1.1e-196 691.0 896 45.1
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 2.1e-192 676.8 826 45.4
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 1.3e-181 641.0 814 48.0
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 3.4e-171 606.3 829 41.0
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 9.1e-164 581.6 465 61.9
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 5.2e-151 539.3 850 37.2
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 1.2e-142 511.5 586 47.1
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 1.5e-142 511.1 852 37.1
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 6.1e-136 489.2 836 37.2
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 2.2e-133 480.7 342 68.1
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.4e-132 478.0 479 53.0
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 7.8e-123 445.7 837 34.3
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.8e-111 407.9 410 53.2
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 1.2e-107 395.2 270 78.1
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 1.7e-106 391.3 269 77.7
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 1.9e-105 387.9 269 77.7
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 7.3e-97 359.4 682 33.6
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 6.4e-93 346.3 410 46.8
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 2.5e-65 254.6 748 28.6
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 1.3e-56 225.7 151 68.9
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 2.2e-48 198.4 773 24.5
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.9e-44 185.3 162 58.0
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 2.1e-43 181.8 209 45.5
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 6.1e-43 180.3 197 49.2
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 2.2e-40 171.8 462 30.1
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 2.5e-36 158.3 106 76.4
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 6.1e-35 153.7 106 74.5
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 8.8e-34 149.8 104 64.4
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 2.6e-25 121.7 135 48.1
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 1.1e-23 116.3 139 43.2
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 4.5e-22 110.9 63 88.9
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 1.1e-20 106.3 94 57.4
CARHR240490 Cardamine hirsuta HOM05D004893 ORTHO05D006320 2.0e-14 85.5 77 54.5
BcaC09g48066 Brassica carinata HOM05D014782 ORTHO05D031875 7.3e-12 77.0 117 47.0
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 1.2e-11 76.3 66 54.5
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.2e-11 76.3 145 34.5
BcaC06g36526 Brassica carinata HOM05D004893 ORTHO05D032397 4.7e-11 74.3 96 46.9
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 1.4e-10 72.8 49 65.3
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 1.8e-10 72.4 49 65.3
C07p03290 Brassica napus HOM05D004893 ORTHO05D032397 4.0e-10 71.2 40 87.5
BolC7t40730H Brassica oleracea HOM05D004893 ORTHO05D032397 4.0e-10 71.2 40 87.5
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 2.6e-09 68.6 94 43.6
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 5.4e-07 60.8 81 40.7
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.6e-06 59.3 71 39.4
Actinidia31528 Actinidia chinensis HOM05D004893 ORTHO05D006320 3.5e-06 58.2 40 65.0


User provided reference genes

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