Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3294 Capsella rubella HOM05D004960 ORTHO05D004696 8.5e-149 530.4 286 100.0
AT2G18680 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 3.4e-121 438.7 288 82.6
Sp3g32170 Schrenkiella parvula HOM05D004960 ORTHO05D004696 7.5e-105 384.4 290 73.4
BcaC04g21483 Brassica carinata HOM05D004960 ORTHO05D004696 4.9e-104 381.7 290 73.1
C09p31280 Brassica napus HOM05D004960 ORTHO05D004696 4.9e-104 381.7 290 73.1
A07p01900 Brassica napus HOM05D004960 ORTHO05D004696 2.3e-101 372.9 291 71.8
BraA07t27990Z Brassica rapa HOM05D004960 ORTHO05D004696 2.3e-101 372.9 291 71.8
BcaB07g31648 Brassica carinata HOM05D004960 ORTHO05D004696 2.8e-99 365.9 290 70.0
BcaB03g16662 Brassica carinata HOM05D004960 ORTHO05D004696 4.7e-99 365.2 290 70.3
BolC9t55984H Brassica oleracea HOM05D004960 ORTHO05D004696 8.1e-99 364.4 290 71.7
A09p12040 Brassica napus HOM05D004960 ORTHO05D004696 2.3e-98 362.8 290 69.0
BraA09t36847Z Brassica rapa HOM05D004960 ORTHO05D004696 2.3e-98 362.8 290 69.0
BcaC04g22889 Brassica carinata HOM05D004960 ORTHO05D004696 8.9e-98 360.9 290 68.6
C09p14170 Brassica napus HOM05D004960 ORTHO05D004696 8.9e-98 360.9 290 68.6
C07p04050 Brassica napus HOM05D004960 ORTHO05D004696 2.6e-97 359.4 285 69.8
Thhalv10022778m.g Eutrema salsugineum HOM05D004960 ORTHO05D004696 4.4e-97 358.6 296 69.3
BolC9t54315H Brassica oleracea HOM05D004960 ORTHO05D004696 7.6e-97 357.8 290 68.3
AL3G52080 Arabidopsis lyrata HOM05D004960 ORTHO05D004696 4.3e-92 342.0 293 68.6
BolC7t40796H Brassica oleracea HOM05D004960 ORTHO05D004696 2.4e-87 326.2 252 70.6
AT2G18690 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 6.0e-86 321.6 290 64.5
Carub.0003s3296 Capsella rubella HOM05D004960 ORTHO05D004696 1.8e-74 283.5 297 55.9
Carub.0003s3295 Capsella rubella HOM05D004960 ORTHO05D004696 5.3e-74 282.0 261 63.6
CARHR109270 Cardamine hirsuta HOM05D004960 ORTHO05D004696 2.0e-73 280.0 293 57.7
A06p33120 Brassica napus HOM05D004960 ORTHO05D004696 5.6e-68 261.9 293 56.3
C03p59340 Brassica napus HOM05D004960 ORTHO05D004696 7.4e-68 261.5 293 57.7
BraA04t16256Z Brassica rapa HOM05D004960 ORTHO05D004696 1.1e-66 257.7 291 56.7
BraA06t26242Z Brassica rapa HOM05D004960 ORTHO05D004696 4.0e-66 255.8 293 55.3
BcaC01g02853 Brassica carinata HOM05D004960 ORTHO05D004696 1.2e-65 254.2 297 56.2
BolC3t18198H Brassica oleracea HOM05D004960 ORTHO05D004696 1.2e-65 254.2 297 56.2
C04p38300 Brassica napus HOM05D004960 ORTHO05D004696 5.8e-65 251.9 291 56.0
Carub.0003s2660 Capsella rubella HOM05D004960 ORTHO05D004696 8.4e-64 248.1 288 54.9
THA.LOC104803513 Tarenaya hassleriana HOM05D004960 ORTHO05D004696 8.4e-64 248.1 288 52.8
BcaB08g34825 Brassica carinata HOM05D004960 ORTHO05D004696 3.2e-63 246.1 297 54.2
A04p05570 Brassica napus HOM05D004960 ORTHO05D004696 9.6e-60 234.6 291 53.3
BcaC02g09087 Brassica carinata HOM05D004960 ORTHO05D004696 8.2e-59 231.5 291 53.6
BcaC06g36453 Brassica carinata HOM05D004960 ORTHO05D004696 1.4e-58 230.7 288 52.4
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 1.1e-36 157.9 284 38.7
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 1.7e-35 154.1 279 38.4
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 2.2e-35 153.7 290 37.6
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 6.3e-35 152.1 288 37.8
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 6.5e-32 142.1 287 36.9
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 2.5e-31 140.2 263 36.9
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 2.7e-30 136.7 287 36.2
TWI32G0132 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 4.7e-30 136.0 283 34.6
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 6.1e-30 135.6 288 36.1
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 4.0e-29 132.9 218 41.3
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 1.5e-28 131.0 285 34.7
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 1.5e-28 131.0 282 34.4
Cpa.g.c29666.2 Carica papaya HOM05D004960 ORTHO05D004696 3.3e-28 129.8 287 34.8
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 2.8e-27 126.7 296 34.5
PGR084G0002 Punica granatum HOM05D004960 ORTHO05D004696 2.8e-27 126.7 295 33.6
PGR142G0218 Punica granatum HOM05D004960 ORTHO05D004696 2.8e-27 126.7 295 33.6
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 4.8e-27 125.9 222 38.3
Manes.14G147200 Manihot esculenta HOM05D004960 ORTHO05D004696 7.0e-26 122.1 280 32.1
BolC4t25405H Brassica oleracea HOM05D004960 ORTHO05D004696 9.1e-26 121.7 126 60.3
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 9.1e-26 121.7 283 33.2
Cpa.g.sc75.10 Carica papaya HOM05D004960 ORTHO05D004696 4.5e-25 119.4 235 37.9
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 5.9e-25 119.0 274 34.3
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 2.5e-23 113.6 290 32.4
RcHm_v2.0_Chr4g0404721 Rosa chinensis HOM05D004960 ORTHO05D004696 1.2e-22 111.3 284 32.7
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 2.7e-22 110.2 264 32.6
Duzib168G0188 Durio zibethinus HOM05D004960 ORTHO05D004696 4.7e-22 109.4 283 31.8
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 6.1e-22 109.0 288 29.2
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 6.8e-21 105.5 291 32.0
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 9.8e-20 101.7 293 31.7
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 9.8e-20 101.7 293 31.7
Oeu043380.1 Olea europaea HOM05D004960 ORTHO05D004696 1.7e-19 100.9 229 37.1
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 2.8e-19 100.1 283 30.4
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 3.7e-19 99.8 293 30.4
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 6.3e-19 99.0 293 30.0
Prupe.1G095700 Prunus persica HOM05D004960 ORTHO05D004696 1.1e-18 98.2 286 32.2
Lsat_1_v5_gn_7_52700 Lactuca sativa HOM05D004960 ORTHO05D004696 1.2e-17 94.7 284 27.8
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 2.0e-17 94.0 294 29.6
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 3.5e-17 93.2 285 30.5
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 4.5e-17 92.8 286 27.3
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.3e-16 91.3 266 29.3
Hma1.2p1_0921F.1_g236770 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 2.9e-16 90.1 296 30.1
Hma1.2p1_0921F.1_g236794 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 2.9e-16 90.1 296 30.1
Atru.chr12.164 Acer truncatum HOM05D004960 ORTHO05D004696 1.9e-15 87.4 196 38.3
Oeu037992.1 Olea europaea HOM05D004960 ORTHO05D004696 1.9e-15 87.4 296 28.7
SGA_v2.0_scaffold69G23316 Striga asiatica HOM05D004960 ORTHO05D004696 5.5e-15 85.9 262 33.6
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 7.2e-15 85.5 279 27.2
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 9.5e-15 85.1 293 27.0
Dinv42772 Davidia involucrata HOM05D004960 ORTHO05D004696 1.2e-14 84.7 198 34.3
ECA240G0411 Erigeron canadensis HOM05D004960 ORTHO05D004696 2.1e-14 84.0 284 28.9
HanXRQChr03g0068521 Helianthus annuus HOM05D004960 ORTHO05D004696 4.7e-14 82.8 244 26.6
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.4e-13 81.3 273 29.7
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.4e-13 81.3 277 28.9
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.8e-13 80.9 295 32.9
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.0e-13 80.1 198 31.3
Migut.K00271 Erythranthe guttata HOM05D004960 ORTHO05D004696 4.0e-13 79.7 230 30.4
Prupe.1G095800 Prunus persica HOM05D004960 ORTHO05D004696 5.2e-13 79.3 124 36.3
Cc06_g13860 Coffea canephora HOM05D004960 ORTHO05D004696 6.8e-13 79.0 287 27.5
Dinv41299 Davidia involucrata HOM05D004960 ORTHO05D004696 6.8e-13 79.0 297 30.0
CSS0049948 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.5e-12 77.8 296 31.4
Nn8g40270 Nelumbo nucifera HOM05D004960 ORTHO05D004696 2.0e-12 77.4 271 27.7
Lsat_1_v5_gn_7_52661 Lactuca sativa HOM05D012567 ORTHO05D004696 3.4e-12 76.6 199 32.2
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.4e-12 76.6 207 31.4
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 5.7e-12 75.9 207 30.9
HanXRQChr03g0068481 Helianthus annuus HOM05D004960 ORTHO05D004696 7.5e-12 75.5 281 24.9
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 9.8e-12 75.1 223 31.4
Oeu037995.1 Olea europaea HOM05D004960 ORTHO05D004696 1.3e-11 74.7 165 32.1
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 2.8e-11 73.6 293 29.0
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 4.9e-11 72.8 218 29.8
Solyc07g006420.1 Solanum lycopersicum HOM05D004960 ORTHO05D004696 6.3e-11 72.4 285 27.4
Lsat_1_v5_gn_7_52621 Lactuca sativa HOM05D012567 ORTHO05D004696 8.3e-11 72.0 196 30.6
PGSC0003DMG400034810 Solanum tuberosum HOM05D004960 ORTHO05D004696 8.3e-11 72.0 259 26.6
Aqoxy7G03206 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.1e-10 71.6 279 26.5
COL.COLO4_16058 Corchorus olitorius HOM05D007179 ORTHO05D009124 1.1e-10 71.6 231 29.0
Aqoxy7G03204 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.4e-10 71.2 291 27.1
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 1.6e-09 67.8 264 26.5
TAR383G0614 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.6e-09 67.8 207 29.5
Nn2g12577 Nelumbo nucifera HOM05D004960 ORTHO05D004696 2.0e-09 67.4 266 27.1
SalBow6G0476 Salvia bowleyana HOM05D004960 ORTHO05D004696 2.7e-09 67.0 222 30.2
Migut.K00270 Erythranthe guttata HOM05D004960 ORTHO05D004696 4.5e-09 66.2 255 25.5
Migut.J01430 Erythranthe guttata HOM05D004960 ORTHO05D004696 5.9e-09 65.9 291 27.1
ECA240G1251 Erigeron canadensis HOM05D012567 ORTHO05D004696 1.0e-08 65.1 195 27.7
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 1.0e-08 65.1 226 28.8
Nn5g28536 Nelumbo nucifera HOM05D001062 ORTHO05D000884 2.3e-08 63.9 238 27.3
Nn1g04315 Nelumbo nucifera HOM05D004960 ORTHO05D004696 3.8e-08 63.2 229 28.4
Lsat_1_v5_gn_7_52640 Lactuca sativa HOM05D012567 ORTHO05D004696 5.0e-08 62.8 204 31.4
Eucgr.J03153 Eucalyptus grandis HOM05D004960 ORTHO05D004696 6.6e-08 62.4 221 29.4
HanXRQChr03g0074171 Helianthus annuus HOM05D012567 ORTHO05D004696 6.6e-08 62.4 266 25.9
Actinidia35989 Actinidia chinensis HOM05D004960 ORTHO05D004696 8.6e-08 62.0 294 26.2
Dinv24369 Davidia involucrata HOM05D001062 ORTHO05D000884 8.6e-08 62.0 266 29.3
Atru.chr4.907 Acer truncatum HOM05D001062 ORTHO05D000884 1.1e-07 61.6 213 27.7
Lj4P839T38 Lonicera japonica HOM05D001062 ORTHO05D000884 1.1e-07 61.6 209 29.7
Potri.007G105600 Populus trichocarpa HOM05D001062 ORTHO05D000884 1.1e-07 61.6 248 29.4
Sabra07G0086400 Salix brachista HOM05D001062 ORTHO05D000884 1.5e-07 61.2 245 29.0
TWI34G1225 Tripterygium wilfordii HOM05D001062 ORTHO05D000884 2.5e-07 60.5 233 30.0
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 3.3e-07 60.1 277 24.9
COL.COLO4_35750 Corchorus olitorius HOM05D001062 ORTHO05D000884 3.3e-07 60.1 251 29.5
COL.COLO4_35751 Corchorus olitorius HOM05D001062 ORTHO05D000884 3.3e-07 60.1 225 30.7
Migut.L00968 Erythranthe guttata HOM05D001062 ORTHO05D000884 3.3e-07 60.1 279 25.4
CANSAT21G1631 Cannabis sativa HOM05D001062 ORTHO05D000884 4.3e-07 59.7 261 26.1
Migut.J01431 Erythranthe guttata HOM05D015143 ORTHO05D004696 5.6e-07 59.3 260 27.7
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 9.5e-07 58.5 285 26.0
HanXRQChr03g0074111 Helianthus annuus HOM05D012567 ORTHO05D004696 9.5e-07 58.5 272 25.7
HanXRQChr03g0074151 Helianthus annuus HOM05D012567 ORTHO05D004696 9.5e-07 58.5 272 25.7
EL10Ac6g15296 Beta vulgaris HOM05D001062 ORTHO05D000884 1.6e-06 57.8 294 27.9
Duzib264G0268 Durio zibethinus HOM05D001062 ORTHO05D000884 1.6e-06 57.8 286 28.7
HanXRQChr16g0510881 Helianthus annuus HOM05D001062 ORTHO05D000884 1.6e-06 57.8 206 26.7
Migut.L00962 Erythranthe guttata HOM05D001062 ORTHO05D000884 2.1e-06 57.4 229 25.8
TAR381G1261 Trochodendron aralioides HOM05D001062 ORTHO05D000884 2.1e-06 57.4 287 29.6
Cc10_g12610 Coffea canephora HOM05D001062 ORTHO05D000884 2.8e-06 57.0 280 24.6
CANSAT21G2281 Cannabis sativa HOM05D001062 ORTHO05D000884 4.7e-06 56.2 264 26.5
Migut.L00876 Erythranthe guttata HOM05D001062 ORTHO05D000884 4.7e-06 56.2 228 25.4
RcHm_v2.0_Chr4g0404701 Rosa chinensis HOM05D004960 ORTHO05D004696 8.0e-06 55.5 142 27.5


User provided reference genes

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