Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3266 Capsella rubella HOM05D008053 ORTHO05D009808 2.6e-89 332.4 218 93.6
Carub.0003s3268 Capsella rubella HOM05D008053 ORTHO05D009808 2.6e-89 332.4 218 100.0
Carub.0003s3269 Capsella rubella HOM05D008053 ORTHO05D009808 1.0e-85 320.5 220 90.0
AL3G51820 Arabidopsis lyrata HOM05D008053 ORTHO05D009808 3.3e-44 182.6 295 40.0
Sp3g31950 Schrenkiella parvula HOM05D008053 ORTHO05D009808 1.2e-41 174.1 293 39.2
AT5G42640 Arabidopsis thaliana HOM05D008053 ORTHO05D009808 5.1e-37 158.7 288 37.5
AT2G15740 Arabidopsis thaliana HOM05D008053 ORTHO05D009808 1.5e-36 157.1 293 37.5
AT2G18490 Arabidopsis thaliana HOM05D008053 ORTHO05D009808 2.4e-34 149.8 271 39.5
AL8G18580 Arabidopsis lyrata HOM05D008053 ORTHO05D009808 1.2e-33 147.5 285 37.2
A07p02220 Brassica napus HOM05D008053 ORTHO05D009808 1.0e-32 144.4 290 35.5
BraA07t28016Z Brassica rapa HOM05D008053 ORTHO05D009808 1.0e-32 144.4 290 35.5
BolC7t40826H Brassica oleracea HOM05D008053 ORTHO05D009808 6.5e-32 141.7 290 35.5
C07p04320 Brassica napus HOM05D008053 ORTHO05D009808 1.4e-31 140.6 290 35.5
Carub.0003s3265 Capsella rubella HOM05D008053 ORTHO05D009808 4.2e-31 139.0 82 80.5
AL6G34120 Arabidopsis lyrata HOM05D008053 ORTHO05D009808 3.7e-27 125.9 292 32.9
Carub.0003s2958 Capsella rubella HOM05D008053 ORTHO05D009808 4.8e-27 125.6 294 33.0
AL8G17500 Arabidopsis lyrata HOM05D008053 ORTHO05D009808 9.1e-26 121.3 291 32.6
AT5G22990 Arabidopsis thaliana HOM05D008053 ORTHO05D009808 4.5e-25 119.0 294 32.3
Thhalv10023174m.g Eutrema salsugineum HOM05D008053 ORTHO05D009808 3.2e-23 112.8 304 32.6
Sp6g22400 Schrenkiella parvula HOM05D008053 ORTHO05D009808 4.2e-23 112.5 290 31.7
AL3G47500 Arabidopsis lyrata HOM05D008053 ORTHO05D009808 1.0e-21 107.8 83 63.9
BcaB08g36385 Brassica carinata HOM05D008053 ORTHO05D009808 3.9e-21 105.9 290 31.7
BcaB03g16634 Brassica carinata HOM05D008053 ORTHO05D009808 1.3e-19 100.9 67 70.1
CARHR190540 Cardamine hirsuta HOM05D008053 ORTHO05D009808 1.3e-19 100.9 289 31.1
BcaC06g36417 Brassica carinata HOM05D008053 ORTHO05D009808 8.2e-19 98.2 80 61.2
Thhalv10015522m.g Eutrema salsugineum HOM05D008053 ORTHO05D009808 1.4e-18 97.4 293 30.0
BcaC06g36419 Brassica carinata HOM05D008053 ORTHO05D009808 4.1e-18 95.9 81 58.0
Carub.0008s0673 Capsella rubella HOM05D008053 ORTHO05D009808 1.6e-17 94.0 70 64.3
BolC7t40828H Brassica oleracea HOM05D008053 ORTHO05D009808 2.6e-17 93.2 79 60.8
Carub.0006s2076 Capsella rubella HOM05D008053 ORTHO05D009808 2.6e-17 93.2 283 31.4
Carub.0008s0555 Capsella rubella HOM05D008053 ORTHO05D009808 4.5e-17 92.4 60 71.7
THA.LOC104811119 Tarenaya hassleriana HOM05D008053 ORTHO05D009808 5.0e-16 89.0 64 65.6
CARHR109100 Cardamine hirsuta HOM05D008053 ORTHO05D009808 6.5e-16 88.6 62 59.7
A10p18040 Brassica napus HOM05D008053 ORTHO05D009808 8.5e-16 88.2 288 32.3
BraA10t43878Z Brassica rapa HOM05D008053 ORTHO05D009808 8.5e-16 88.2 288 32.3
Carub.0004s0856 Capsella rubella HOM05D008053 ORTHO05D009808 8.5e-16 88.2 275 30.2
BcaC04g19617 Brassica carinata HOM05D008053 ORTHO05D009808 2.5e-15 86.7 288 31.9
C09p53590 Brassica napus HOM05D008053 ORTHO05D009808 2.5e-15 86.7 288 31.9
BolC9t58235H Brassica oleracea HOM05D008053 ORTHO05D009808 2.5e-15 86.7 288 31.9
CARHR039750 Cardamine hirsuta HOM05D008053 ORTHO05D009808 2.5e-15 86.7 270 30.4
THA.LOC104799082 Tarenaya hassleriana HOM05D008053 ORTHO05D009808 3.2e-15 86.3 71 57.7
Haze_23012 Corylus avellana HOM05D008053 ORTHO05D009808 4.7e-14 82.4 57 66.7
Psat6g241800 Pisum sativum HOM05D008053 ORTHO05D009808 4.7e-14 82.4 64 59.4
Psat0s3483g0080 Pisum sativum HOM05D008053 ORTHO05D009808 8.0e-14 81.6 65 56.9
BcaC06g36418 Brassica carinata HOM05D008053 ORTHO05D009808 1.8e-13 80.5 80 53.8
Cfa009650 Carpinus fangiana HOM05D008053 ORTHO05D009808 3.0e-13 79.7 57 63.2
BolC7t40827H Brassica oleracea HOM05D008053 ORTHO05D009808 4.0e-13 79.3 54 64.8
Psat6g241760 Pisum sativum HOM05D008053 ORTHO05D009808 1.2e-12 77.8 64 56.2
Glyma.10G295200 Glycine max HOM05D008053 ORTHO05D009808 9.7e-12 74.7 58 60.3
Manes.03G090200 Manihot esculenta HOM05D008053 ORTHO05D009808 9.7e-12 74.7 70 51.4
Phvul.007G004800 Phaseolus vulgaris HOM05D008053 ORTHO05D009808 1.3e-11 74.3 74 47.3
VMungo0720G0435 Vigna mungo HOM05D008053 ORTHO05D009808 2.8e-11 73.2 76 48.7
PGR119G1672 Punica granatum HOM05D008053 ORTHO05D009808 1.4e-10 70.9 77 49.4
Cpa.g.sc235.19 Carica papaya HOM05D008053 ORTHO05D009808 9.1e-10 68.2 61 49.2
Ca_11393_v3 Cicer arietinum L. HOM05D008053 ORTHO05D009808 9.1e-10 68.2 77 46.8
Ca_11392_v3 Cicer arietinum L. HOM05D008053 ORTHO05D009808 3.5e-09 66.2 71 43.7
Sabra03G0159700 Salix brachista HOM05D008053 ORTHO05D009808 3.5e-09 66.2 67 47.8
Psat6g240400 Pisum sativum HOM05D008053 ORTHO05D009808 4.5e-09 65.9 63 49.2
Atru.chr3.2693 Acer truncatum HOM05D008053 ORTHO05D009808 7.7e-09 65.1 67 50.7
Medtr3g084720 Medicago truncatula HOM05D008053 ORTHO05D009808 7.7e-09 65.1 71 46.5
Lj5g0002040 Lotus japonicus HOM05D008053 ORTHO05D009808 1.3e-08 64.3 55 56.4
Psat0s3483g0040 Pisum sativum HOM05D008053 ORTHO05D009808 1.7e-08 63.9 61 50.8
Ciclev10017443m.g Citrus clementina HOM05D013188 ORTHO05D009808 2.2e-08 63.5 74 48.6
arahy.Tifrunner.gnm1.ann1.QT88WB Arachis hypogaea HOM05D001116 ORTHO05D009808 8.5e-08 61.6 60 53.3
Cpa.g.c34836 Carica papaya HOM05D013188 ORTHO05D009808 8.5e-08 61.6 71 46.5
Sp7g24060 Schrenkiella parvula HOM05D015172 ORTHO05D016817 1.5e-07 60.8 76 40.8
Cpa.g.sc235.9 Carica papaya HOM05D013188 ORTHO05D009808 5.5e-07 58.9 71 43.7
Cpa.g.sc235.11 Carica papaya HOM05D013188 ORTHO05D009808 7.2e-07 58.5 71 45.1
Cpa.g.sc235.13 Carica papaya HOM05D013188 ORTHO05D009808 7.2e-07 58.5 71 45.1
Cpa.g.sc1399.1 Carica papaya HOM05D013188 ORTHO05D009808 9.4e-07 58.2 71 45.1
Cpa.g.sc235.16 Carica papaya HOM05D013188 ORTHO05D009808 2.7e-06 56.6 78 43.6
Sc09g0000360 Simmondsia chinensis HOM05D008053 ORTHO05D009808 2.7e-06 56.6 52 50.0
Thecc.09G217900 Theobroma cacao HOM05D020410 ORTHO05D029866 3.6e-06 56.2 57 47.4
VMungo0720G1236 Vigna mungo HOM05D008053 ORTHO05D009808 6.1e-06 55.5 46 56.5


User provided reference genes

Program Settings