Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3266 Capsella rubella HOM05D008053 ORTHO05D009808 4.5e-111 404.8 238 100.0
Carub.0003s3269 Capsella rubella HOM05D008053 ORTHO05D009808 2.8e-89 332.4 220 92.7
Carub.0003s3268 Capsella rubella HOM05D008053 ORTHO05D009808 4.8e-89 331.6 218 93.6
AL3G51820 Arabidopsis lyrata HOM05D008053 ORTHO05D009808 3.5e-47 192.6 295 41.0
Sp3g31950 Schrenkiella parvula HOM05D008053 ORTHO05D009808 2.1e-44 183.3 293 41.0
AT2G15740 Arabidopsis thaliana HOM05D008053 ORTHO05D009808 5.4e-40 168.7 293 38.9
AT2G18490 Arabidopsis thaliana HOM05D008053 ORTHO05D009808 7.8e-39 164.9 271 41.7
AT5G42640 Arabidopsis thaliana HOM05D008053 ORTHO05D009808 7.8e-39 164.9 288 38.2
AL8G18580 Arabidopsis lyrata HOM05D008053 ORTHO05D009808 7.3e-37 158.3 285 39.3
A07p02220 Brassica napus HOM05D008053 ORTHO05D009808 1.4e-35 154.1 290 37.2
BraA07t28016Z Brassica rapa HOM05D008053 ORTHO05D009808 1.4e-35 154.1 290 37.2
BolC7t40826H Brassica oleracea HOM05D008053 ORTHO05D009808 1.2e-34 151.0 290 37.2
C07p04320 Brassica napus HOM05D008053 ORTHO05D009808 2.6e-34 149.8 290 37.2
Carub.0003s3265 Capsella rubella HOM05D008053 ORTHO05D009808 6.4e-33 145.2 85 81.2
Carub.0003s2958 Capsella rubella HOM05D008053 ORTHO05D009808 1.2e-28 131.0 294 34.7
AL8G17500 Arabidopsis lyrata HOM05D008053 ORTHO05D009808 2.1e-28 130.2 293 33.8
AL6G34120 Arabidopsis lyrata HOM05D008053 ORTHO05D009808 3.6e-28 129.4 292 33.6
AT5G22990 Arabidopsis thaliana HOM05D008053 ORTHO05D009808 1.2e-26 124.4 294 34.0
Thhalv10023174m.g Eutrema salsugineum HOM05D008053 ORTHO05D009808 7.6e-26 121.7 301 33.6
Sp6g22400 Schrenkiella parvula HOM05D008053 ORTHO05D009808 6.4e-25 118.6 293 33.4
AL3G47500 Arabidopsis lyrata HOM05D008053 ORTHO05D009808 1.2e-23 114.4 90 62.2
BcaB08g36385 Brassica carinata HOM05D008053 ORTHO05D009808 3.5e-23 112.8 290 33.1
CARHR190540 Cardamine hirsuta HOM05D008053 ORTHO05D009808 5.6e-21 105.5 289 31.8
Thhalv10015522m.g Eutrema salsugineum HOM05D008053 ORTHO05D009808 5.6e-21 105.5 293 32.4
BcaB03g16634 Brassica carinata HOM05D008053 ORTHO05D009808 1.1e-19 101.3 89 58.4
BcaC06g36417 Brassica carinata HOM05D008053 ORTHO05D009808 1.5e-18 97.4 80 61.2
Carub.0006s2076 Capsella rubella HOM05D008053 ORTHO05D009808 1.5e-18 97.4 290 31.0
BcaC06g36419 Brassica carinata HOM05D008053 ORTHO05D009808 7.6e-18 95.1 81 58.0
CARHR039750 Cardamine hirsuta HOM05D008053 ORTHO05D009808 7.6e-18 95.1 276 29.3
A10p18040 Brassica napus HOM05D008053 ORTHO05D009808 1.7e-17 94.0 288 31.6
BraA10t43878Z Brassica rapa HOM05D008053 ORTHO05D009808 1.7e-17 94.0 288 31.6
BcaC04g19617 Brassica carinata HOM05D008053 ORTHO05D009808 2.2e-17 93.6 290 31.7
C09p53590 Brassica napus HOM05D008053 ORTHO05D009808 2.2e-17 93.6 290 31.7
BolC9t58235H Brassica oleracea HOM05D008053 ORTHO05D009808 2.2e-17 93.6 290 31.7
Carub.0008s0673 Capsella rubella HOM05D008053 ORTHO05D009808 2.2e-17 93.6 70 64.3
BolC7t40828H Brassica oleracea HOM05D008053 ORTHO05D009808 3.8e-17 92.8 79 60.8
Carub.0008s0555 Capsella rubella HOM05D008053 ORTHO05D009808 4.9e-17 92.4 60 71.7
Carub.0004s0856 Capsella rubella HOM05D008053 ORTHO05D009808 8.4e-17 91.7 275 30.2
THA.LOC104811119 Tarenaya hassleriana HOM05D008053 ORTHO05D009808 5.4e-16 89.0 64 65.6
CARHR109100 Cardamine hirsuta HOM05D008053 ORTHO05D009808 7.1e-16 88.6 62 59.7
THA.LOC104799082 Tarenaya hassleriana HOM05D008053 ORTHO05D009808 3.5e-15 86.3 71 57.7
Haze_23012 Corylus avellana HOM05D008053 ORTHO05D009808 3.9e-14 82.8 57 66.7
Psat6g241800 Pisum sativum HOM05D008053 ORTHO05D009808 5.1e-14 82.4 64 59.4
Psat0s3483g0080 Pisum sativum HOM05D008053 ORTHO05D009808 8.7e-14 81.6 65 56.9
BcaC06g36418 Brassica carinata HOM05D008053 ORTHO05D009808 2.5e-13 80.1 80 53.8
Cfa009650 Carpinus fangiana HOM05D008053 ORTHO05D009808 2.5e-13 80.1 57 63.2
Psat6g241760 Pisum sativum HOM05D008053 ORTHO05D009808 1.3e-12 77.8 64 56.2
BolC7t40827H Brassica oleracea HOM05D008053 ORTHO05D009808 2.1e-12 77.0 100 43.0
Glyma.10G295200 Glycine max HOM05D008053 ORTHO05D009808 8.1e-12 75.1 58 60.3
Manes.03G090200 Manihot esculenta HOM05D008053 ORTHO05D009808 1.4e-11 74.3 70 51.4
Phvul.007G004800 Phaseolus vulgaris HOM05D008053 ORTHO05D009808 2.4e-11 73.6 74 47.3
VMungo0720G0435 Vigna mungo HOM05D008053 ORTHO05D009808 4.0e-11 72.8 76 48.7
Cpa.g.sc235.19 Carica papaya HOM05D008053 ORTHO05D009808 1.5e-10 70.9 85 42.4
PGR119G1672 Punica granatum HOM05D008053 ORTHO05D009808 2.0e-10 70.5 77 49.4
Ca_11393_v3 Cicer arietinum L. HOM05D008053 ORTHO05D009808 1.7e-09 67.4 77 46.8
Ca_11392_v3 Cicer arietinum L. HOM05D008053 ORTHO05D009808 3.8e-09 66.2 83 38.6
Sabra03G0159700 Salix brachista HOM05D008053 ORTHO05D009808 3.8e-09 66.2 67 47.8
Psat6g240400 Pisum sativum HOM05D008053 ORTHO05D009808 4.9e-09 65.9 63 49.2
Atru.chr3.2693 Acer truncatum HOM05D008053 ORTHO05D009808 8.4e-09 65.1 67 50.7
Medtr3g084720 Medicago truncatula HOM05D008053 ORTHO05D009808 8.4e-09 65.1 84 41.7
Lj5g0002040 Lotus japonicus HOM05D008053 ORTHO05D009808 1.4e-08 64.3 55 56.4
Psat0s3483g0040 Pisum sativum HOM05D008053 ORTHO05D009808 1.9e-08 63.9 61 50.8
Ciclev10017443m.g Citrus clementina HOM05D013188 ORTHO05D009808 4.2e-08 62.8 74 48.6
arahy.Tifrunner.gnm1.ann1.QT88WB Arachis hypogaea HOM05D001116 ORTHO05D009808 9.3e-08 61.6 60 53.3
Cpa.g.c34836 Carica papaya HOM05D013188 ORTHO05D009808 9.3e-08 61.6 71 46.5
Sp7g24060 Schrenkiella parvula HOM05D015172 ORTHO05D016817 2.1e-07 60.5 76 40.8
Cpa.g.sc235.9 Carica papaya HOM05D013188 ORTHO05D009808 6.0e-07 58.9 71 43.7
Cpa.g.sc235.11 Carica papaya HOM05D013188 ORTHO05D009808 7.9e-07 58.5 71 45.1
Cpa.g.sc235.13 Carica papaya HOM05D013188 ORTHO05D009808 7.9e-07 58.5 71 45.1
Cpa.g.sc1399.1 Carica papaya HOM05D013188 ORTHO05D009808 1.0e-06 58.2 71 45.1
Cpa.g.sc235.16 Carica papaya HOM05D013188 ORTHO05D009808 3.0e-06 56.6 78 43.6
Sc09g0000360 Simmondsia chinensis HOM05D008053 ORTHO05D009808 3.0e-06 56.6 52 50.0
Thecc.09G217900 Theobroma cacao HOM05D020410 ORTHO05D029866 3.0e-06 56.6 57 47.4
VMungo0720G1236 Vigna mungo HOM05D008053 ORTHO05D009808 6.7e-06 55.5 46 56.5


User provided reference genes

Program Settings