Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3263 Capsella rubella HOM05D003405 ORTHO05D003920 1.3e-156 557.0 429 100.0
CARHR243680 Cardamine hirsuta HOM05D003405 ORTHO05D003920 1.9e-96 357.1 337 77.4
Thhalv10027098m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 5.3e-94 349.0 328 73.5
AT4G35370 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 1.5e-93 347.4 332 73.8
AL7G15790 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 1.0e-81 308.1 321 74.8
C01p03540 Brassica napus HOM05D003405 ORTHO05D003920 1.4e-78 297.7 364 48.1
BolC1t00343H Brassica oleracea HOM05D003405 ORTHO05D003920 1.4e-78 297.7 364 48.1
BcaNung00601 Brassica carinata HOM05D003405 ORTHO05D003920 4.2e-75 286.2 356 48.0
QL06p035199 Quercus lobata HOM05D003405 ORTHO05D003920 1.6e-74 284.3 357 59.7
Carub.0007s2229 Capsella rubella HOM05D003405 ORTHO05D003920 3.5e-74 283.1 358 53.6
BcaNung00602 Brassica carinata HOM05D003405 ORTHO05D003920 7.9e-74 282.0 348 49.1
CARHR225780 Cardamine hirsuta HOM05D003405 ORTHO05D003920 6.7e-73 278.9 357 61.1
AL7G35270 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 8.7e-73 278.5 358 53.9
Sp7g17610 Schrenkiella parvula HOM05D003405 ORTHO05D003920 1.1e-72 278.1 360 54.4
BcaB04g18507 Brassica carinata HOM05D003405 ORTHO05D003920 1.5e-72 277.7 355 52.4
Aa31LG6G1580 Aethionema arabicum HOM05D003405 ORTHO05D003920 3.3e-72 276.6 350 52.9
CiPaw.07G051500 Carya illinoinensis HOM05D003405 ORTHO05D003920 4.3e-72 276.2 357 51.8
AT4G18905 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 5.7e-72 275.8 361 53.7
BcaNung04868 Brassica carinata HOM05D003405 ORTHO05D003920 6.3e-71 272.3 359 53.8
Thhalv10024971m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 6.3e-71 272.3 360 52.5
CiPaw.08G138300 Carya illinoinensis HOM05D003405 ORTHO05D003920 8.2e-71 271.9 347 52.2
BcaC09g51456 Brassica carinata HOM05D003405 ORTHO05D003920 1.8e-70 270.8 355 52.7
C01p12940 Brassica napus HOM05D003405 ORTHO05D003920 1.8e-70 270.8 355 52.7
THA.LOC104821304 Tarenaya hassleriana HOM05D003405 ORTHO05D003920 3.1e-70 270.0 357 50.4
A01p10930 Brassica napus HOM05D003405 ORTHO05D003920 5.3e-70 269.2 355 52.4
Sp7g33160 Schrenkiella parvula HOM05D003405 ORTHO05D003920 5.3e-70 269.2 341 48.1
Thecc.01G131300 Theobroma cacao HOM05D003405 ORTHO05D003920 1.5e-69 267.7 343 58.6
BolC1t01269H Brassica oleracea HOM05D003405 ORTHO05D003920 2.6e-69 266.9 365 51.2
Gohir.A05G385400 Gossypium hirsutum HOM05D003405 ORTHO05D003920 4.5e-69 266.2 353 49.9
BraA01t01039Z Brassica rapa HOM05D003405 ORTHO05D003920 7.7e-69 265.4 365 51.0
Duzib264G0139 Durio zibethinus HOM05D003405 ORTHO05D003920 1.3e-68 264.6 353 48.4
Sed0024756 Sechium edule HOM05D003405 ORTHO05D003920 1.3e-68 264.6 359 57.9
Cpa.g.sc89.74 Carica papaya HOM05D003405 ORTHO05D003920 2.2e-68 263.8 265 51.3
Dinv32930 Davidia involucrata HOM05D003405 ORTHO05D003920 2.2e-68 263.8 346 50.0
TAR376G0111 Trochodendron aralioides HOM05D003405 ORTHO05D003920 3.8e-68 263.1 346 50.0
CSS0031696 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 6.5e-68 262.3 355 49.9
CsaV3_2G007870 Cucumis sativus L. HOM05D003405 ORTHO05D003920 6.5e-68 262.3 359 54.6
Gorai.012G034400 Gossypium raimondii HOM05D003405 ORTHO05D003920 8.5e-68 261.9 353 50.1
Dinv34758 Davidia involucrata HOM05D003405 ORTHO05D003920 1.4e-67 261.2 345 51.3
CSS0045191 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 1.9e-67 260.8 357 42.3
Actinidia09137 Actinidia chinensis HOM05D003405 ORTHO05D003920 3.2e-67 260.0 347 48.1
Gohir.D04G022600 Gossypium hirsutum HOM05D003405 ORTHO05D003920 3.2e-67 260.0 353 49.6
Atru.chr3.672 Acer truncatum HOM05D003405 ORTHO05D003920 4.2e-67 259.6 364 52.5
Atru.chr3.717 Acer truncatum HOM05D003405 ORTHO05D003920 4.2e-67 259.6 364 52.5
Phvul.008G287000 Phaseolus vulgaris HOM05D003405 ORTHO05D003920 9.4e-67 258.5 356 43.3
AT4G18900 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 1.6e-66 257.7 345 62.9
Manes.12G078200 Manihot esculenta HOM05D003405 ORTHO05D003920 1.6e-66 257.7 358 48.0
Potri.007G019601 Populus trichocarpa HOM05D003405 ORTHO05D003920 2.7e-66 256.9 358 56.1
Actinidia00757 Actinidia chinensis HOM05D003405 ORTHO05D003920 4.6e-66 256.1 348 48.0
Medtr5g097870 Medicago truncatula HOM05D003405 ORTHO05D003920 7.9e-66 255.4 256 50.4
Potri.007G019833 Populus trichocarpa HOM05D003405 ORTHO05D003920 7.9e-66 255.4 357 55.7
Prupe.7G160700 Prunus persica HOM05D003405 ORTHO05D003920 1.0e-65 255.0 358 48.9
GSVIVG01018880001 Vitis vinifera HOM05D003405 ORTHO05D003920 3.0e-65 253.4 357 41.5
MELO3C004100.2 Cucumis melo HOM05D003405 ORTHO05D003920 5.1e-65 252.7 359 58.5
Manes.01G139900 Manihot esculenta HOM05D003405 ORTHO05D003920 8.8e-65 251.9 358 45.8
Ciclev10004806m.g Citrus clementina HOM05D003405 ORTHO05D003920 1.1e-64 251.5 352 49.1
Cc04_g14820 Coffea canephora HOM05D003405 ORTHO05D003920 5.7e-64 249.2 259 51.4
Lj9A413G54 Lonicera japonica HOM05D003405 ORTHO05D003920 5.7e-64 249.2 261 49.0
PGR083G0802 Punica granatum HOM05D003405 ORTHO05D003920 5.7e-64 249.2 360 47.8
Migut.H00806 Erythranthe guttata HOM05D003405 ORTHO05D003920 7.4e-64 248.8 356 39.6
TPR.G15067 Trifolium pratense HOM05D003405 ORTHO05D003920 9.7e-64 248.4 256 51.2
ClCG04G004000 Citrullus lanatus HOM05D003405 ORTHO05D003920 2.2e-63 247.3 359 57.7
Hma1.2p1_0822F.1_g224510 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 2.2e-63 247.3 258 50.4
vmacro02576 Vaccinium macrocarpon HOM05D003405 ORTHO05D003920 3.7e-63 246.5 348 51.4
CANSAT11G1046 Cannabis sativa HOM05D003405 ORTHO05D003920 4.8e-63 246.1 332 48.5
Glyma.02G307200 Glycine max HOM05D003405 ORTHO05D003920 1.8e-62 244.2 357 48.2
arahy.Tifrunner.gnm1.ann1.ZY1N1V Arachis hypogaea HOM05D003405 ORTHO05D003920 2.4e-62 243.8 249 51.8
Sc09g0007320 Simmondsia chinensis HOM05D003405 ORTHO05D003920 2.4e-62 243.8 357 52.4
Glyma.14G005900 Glycine max HOM05D003405 ORTHO05D003920 6.9e-62 242.3 357 47.9
arahy.Tifrunner.gnm1.ann1.6C167N Arachis hypogaea HOM05D003405 ORTHO05D003920 9.1e-62 241.9 215 54.9
C03p81560 Brassica napus HOM05D003405 ORTHO05D003920 1.2e-61 241.5 247 54.3
BolC3t20426H Brassica oleracea HOM05D003405 ORTHO05D003920 1.2e-61 241.5 247 54.3
arahy.Tifrunner.gnm1.ann1.LTR966 Arachis hypogaea HOM05D003405 ORTHO05D003920 2.0e-61 240.7 249 51.8
CDE09G0650 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 2.6e-61 240.4 354 55.6
DCAR_023249 Daucus carota HOM05D003405 ORTHO05D003920 2.6e-61 240.4 358 48.0
RcHm_v2.0_Chr2g0100561 Rosa chinensis HOM05D003405 ORTHO05D003920 2.6e-61 240.4 360 46.9
FvH4_5g33300 Fragaria vesca HOM05D003405 ORTHO05D003920 3.4e-61 240.0 350 47.4
MD14G1085200 Malus domestica HOM05D003405 ORTHO05D003920 3.4e-61 240.0 359 46.0
LjContig00081g0028006 Lotus japonicus HOM05D003405 ORTHO05D003920 4.5e-61 239.6 352 48.3
CDE09G0427 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 5.9e-61 239.2 354 55.4
TWI73G0135 Tripterygium wilfordii HOM05D003405 ORTHO05D003920 5.9e-61 239.2 333 51.1
CDE02G2548 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 7.7e-61 238.8 344 56.7
FvH4_1g12600 Fragaria vesca HOM05D003405 ORTHO05D003920 1.3e-60 238.0 350 47.7
arahy.Tifrunner.gnm1.ann1.A1R0CF Arachis hypogaea HOM05D003405 ORTHO05D003920 2.9e-60 236.9 220 54.1
BcaB04g18506 Brassica carinata HOM05D003405 ORTHO05D003920 3.8e-60 236.5 343 51.3
AUR62033117 Chenopodium quinoa HOM05D003405 ORTHO05D003920 5.0e-60 236.1 260 49.6
MD12G1093200 Malus domestica HOM05D003405 ORTHO05D003920 5.0e-60 236.1 359 44.6
Carub.0007s2230 Capsella rubella HOM05D003405 ORTHO05D003920 6.5e-60 235.7 240 55.4
arahy.Tifrunner.gnm1.ann1.LK2XUL Arachis hypogaea HOM05D003405 ORTHO05D003920 1.1e-59 235.0 211 54.0
Solyc04g005330.3 Solanum lycopersicum HOM05D003405 ORTHO05D003920 1.1e-59 235.0 355 47.6
BraA08t33397Z Brassica rapa HOM05D003405 ORTHO05D003920 1.4e-59 234.6 341 51.9
VMungo0647G2029 Vigna mungo HOM05D003405 ORTHO05D003920 4.2e-59 233.0 357 54.9
Cfa013259 Carpinus fangiana HOM05D003405 ORTHO05D006100 5.5e-59 232.6 346 47.7
Sopen04g001310 Solanum pennellii HOM05D003405 ORTHO05D003920 6.1e-58 229.2 355 47.0
Os01g0924300 Oryza sativa ssp. japonica HOM05D003405 ORTHO05D003920 3.9e-57 226.5 217 48.4
BcaC01g00577 Brassica carinata HOM05D003405 ORTHO05D003920 6.7e-57 225.7 246 52.0
arahy.Tifrunner.gnm1.ann1.015YF3 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.1e-56 224.9 243 50.2
HanXRQChr13g0411651 Helianthus annuus HOM05D003405 ORTHO05D003920 3.3e-56 223.4 361 56.0
BolC3t20427H Brassica oleracea HOM05D003405 ORTHO05D003920 4.4e-56 223.0 460 35.0
Rhsim13G0025400 Rhododendron simsii HOM05D003405 ORTHO05D003920 4.4e-56 223.0 334 38.9
Nitab4.5_0004347g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 1.7e-55 221.1 324 58.0
Dinv40394 Davidia involucrata HOM05D003405 ORTHO05D003920 4.8e-55 219.5 287 50.5
Nitab4.5_0001652g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 4.8e-55 219.5 341 55.4
Ca_06470_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 6.3e-55 219.2 207 54.6
arahy.Tifrunner.gnm1.ann1.1Z7RSE Arachis hypogaea HOM05D003405 ORTHO05D003920 8.2e-55 218.8 243 49.0
arahy.Tifrunner.gnm1.ann1.AGQ12H Arachis hypogaea HOM05D003405 ORTHO05D003920 8.2e-55 218.8 248 48.4
Hma1.2p1_0083F.1_g042700 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 8.2e-55 218.8 296 60.5
Nitab4.5_0003101g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 1.1e-54 218.4 272 45.6
SalBow6G4756 Salvia bowleyana HOM05D003405 ORTHO05D003920 1.4e-54 218.0 218 50.9
ATR0693G254 Amborella trichopoda HOM05D003405 ORTHO05D003920 7.7e-53 212.2 340 54.7
HanXRQChr03g0083001 Helianthus annuus HOM05D003405 ORTHO05D003920 1.1e-51 208.4 241 46.9
ECA240G1009 Erigeron canadensis HOM05D003405 ORTHO05D003920 2.5e-51 207.2 298 46.3
Peaxi162Scf00047g00219 Petunia axillaris HOM05D003405 ORTHO05D003920 4.2e-51 206.5 395 47.3
COL.COLO4_35734 Corchorus olitorius HOM05D003405 ORTHO05D003920 4.7e-50 203.0 230 48.3
FAN18G4171 Fragaria x ananassa HOM05D003405 ORTHO05D003920 8.0e-50 202.2 267 44.2
SGA_v2.0_scaffold81G26011 Striga asiatica HOM05D003405 ORTHO05D003920 1.0e-49 201.8 245 45.3
Haze_21717 Corylus avellana HOM05D003405 ORTHO05D003920 1.8e-49 201.1 193 54.9
unitig_52.g17243 Utricularia gibba HOM05D003405 ORTHO05D003920 1.8e-49 201.1 268 42.5
EL10As7g23803 Beta vulgaris HOM05D003405 ORTHO05D003920 3.0e-49 200.3 354 37.6
C03p81570 Brassica napus HOM05D003405 ORTHO05D003920 3.0e-49 200.3 390 36.4
Eucgr.H02854 Eucalyptus grandis HOM05D003405 ORTHO05D003920 3.9e-49 199.9 232 44.4
Sabra07G0016700 Salix brachista HOM05D003405 ORTHO05D003920 6.7e-49 199.1 228 46.9
FAN04G1939 Fragaria x ananassa HOM05D003405 ORTHO05D003920 8.8e-49 198.7 245 45.7
PSO832G1536 Papaver somniferum HOM05D003405 ORTHO05D003920 4.4e-48 196.4 345 40.3
Lalb_Chr17g0349241 Lupinus albus HOM05D003405 ORTHO05D003920 1.3e-47 194.9 234 47.0
Lsat_1_v5_gn_5_59220 Lactuca sativa HOM05D003405 ORTHO05D003920 2.2e-47 194.1 263 40.7
PSO761G0245 Papaver somniferum HOM05D003405 ORTHO05D003920 2.2e-47 194.1 256 42.6
FAN19G0435 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.8e-46 191.0 350 36.9
Ah.05g167170 Amaranthus hybridus HOM05D003405 ORTHO05D003920 2.4e-46 190.7 243 45.7
Rhsim05G0047900 Rhododendron simsii HOM05D003405 ORTHO05D003920 3.1e-46 190.3 181 51.4
RhsimUnG0142200 Rhododendron simsii HOM05D003405 ORTHO05D003920 3.1e-46 190.3 181 51.4
BraA08t33398Z Brassica rapa HOM05D003405 ORTHO05D003920 4.1e-46 189.9 187 57.2
Zm00001eb142980 Zea mays HOM05D003405 ORTHO05D003920 2.2e-44 184.1 202 44.6
AUR62039160 Chenopodium quinoa HOM05D003405 ORTHO05D003920 2.1e-42 177.6 187 50.3
MBI02_g23715_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 2.1e-42 177.6 243 41.6
Pp3c4_20160 Physcomitrium patens HOM05D003405 ORTHO05D003920 1.4e-41 174.9 229 41.0
AagrBONN_evm.TU.Sc2ySwM_228.2786 Anthoceros agrestis HOM05D003405 ORTHO05D003920 1.5e-40 171.4 232 40.9
Oeu028071.1 Olea europaea HOM05D003405 ORTHO05D003920 2.0e-40 171.0 186 47.3
HPP92_003102 Vanilla planifolia HOM05D003405 ORTHO05D003920 4.4e-40 169.9 261 39.5
Mapoly0004s0245 Marchantia polymorpha HOM05D003405 ORTHO05D003920 5.7e-40 169.5 294 36.4
FAN08G1135 Fragaria x ananassa HOM05D003405 ORTHO05D003920 4.8e-39 166.4 290 37.9
SMO361G0182 Selaginella moellendorffii HOM05D003405 ORTHO05D003920 2.7e-37 160.6 199 42.2
SMO361G0432 Selaginella moellendorffii HOM05D003405 ORTHO05D003920 2.7e-37 160.6 199 42.2
Nitab4.5_0000401g0230 Nicotiana tabacum HOM05D003405 ORTHO05D003920 4.5e-37 159.8 315 35.2
Hund18693 Selenicereus undatus HOM05D003405 ORTHO05D003920 1.0e-36 158.7 255 39.2
FAN28G1735 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.9e-35 154.5 202 43.6
BcaC06g30604 Brassica carinata HOM05D003405 ORTHO05D003920 1.6e-34 151.4 210 45.2
arahy.Tifrunner.gnm1.ann1.LKD0H4 Arachis hypogaea HOM05D003405 ORTHO05D003920 4.0e-33 146.7 248 38.7
Cre01.g035000 Chlamydomonas reinhardtii HOM05D003405 ORTHO05D003920 1.2e-32 145.2 279 34.4
VMungo0540G1027 Vigna mungo HOM05D003405 ORTHO05D003920 2.6e-32 144.1 167 47.9
FAN26G2328 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.4e-30 138.3 239 38.1
VMungo0540G1594 Vigna mungo HOM05D003405 ORTHO05D003920 1.8e-30 137.9 171 43.3
SGA_v2.0_scaffold80G25931 Striga asiatica HOM05D003405 ORTHO05D003920 5.4e-30 136.3 279 32.6
PGSC0003DMG400023568 Solanum tuberosum HOM05D003405 ORTHO05D003920 2.7e-29 134.0 316 42.1
PGSC0003DMG402005959 Solanum tuberosum HOM05D003405 ORTHO05D003920 4.5e-29 133.3 197 43.1
Atru.chr1.1031 Acer truncatum HOM05D003405 ORTHO05D003920 1.0e-28 132.1 213 55.4
MCO01G177 Micromonas commoda HOM05D003405 ORTHO05D003920 2.9e-28 130.6 267 30.0
MBI16_g36844_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 3.8e-28 130.2 225 37.8
CBR_g8571 Chara braunii HOM05D003405 ORTHO05D003920 8.6e-28 129.0 279 33.0
AL7G35280 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 1.1e-27 128.6 224 42.0
Ca_20890_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 9.5e-27 125.6 258 32.2
PRCOL_00001431 Prasinoderma coloniale HOM05D003405 ORTHO05D003920 3.0e-25 120.6 259 32.4
Cfa021699 Carpinus fangiana HOM05D003405 ORTHO05D003920 1.2e-24 118.6 240 32.1
BcaC01g00579 Brassica carinata HOM05D003405 ORTHO05D003920 5.7e-24 116.3 116 50.9
CSS0037270 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 1.0e-17 95.5 112 48.2
BcaNung02686 Brassica carinata HOM05D003405 ORTHO05D003920 5.2e-17 93.2 65 63.1
Haze_21718 Corylus avellana HOM05D003405 ORTHO05D003920 5.2e-17 93.2 145 54.5
arahy.Tifrunner.gnm1.ann1.98W4LT Arachis hypogaea HOM05D003405 ORTHO05D003920 1.7e-15 88.2 114 46.5
arahy.Tifrunner.gnm1.ann1.N6YQ7G Arachis hypogaea HOM05D003405 ORTHO05D003920 6.4e-15 86.3 65 60.0
C07p50090 Brassica napus HOM05D003405 ORTHO05D003920 1.2e-13 82.0 82 58.5
BolC7t45512H Brassica oleracea HOM05D003405 ORTHO05D003920 3.5e-13 80.5 82 58.5
Psat2g004040 Pisum sativum HOM05D003405 ORTHO05D003920 1.3e-12 78.6 88 45.5
SalBow7G4656 Salvia bowleyana HOM05D027942 ORTHO05D019643 2.8e-10 70.9 86 44.2
Psat2g004000 Pisum sativum HOM05D003405 ORTHO05D003920 2.0e-08 64.7 88 44.3
BcaC01g00578 Brassica carinata HOM05D003405 ORTHO05D003920 7.5e-08 62.8 62 64.5
PGSC0003DMG401005959 Solanum tuberosum HOM05D003405 ORTHO05D003920 9.8e-08 62.4 44 59.1
CSS0047421 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 3.7e-07 60.5 59 49.2
BraA03t14247Z Brassica rapa HOM05D003405 ORTHO05D003920 6.4e-07 59.7 41 70.7
arahy.Tifrunner.gnm1.ann1.Q3GRJ7 Arachis hypogaea HOM05D003405 ORTHO05D003920 8.3e-07 59.3 33 72.7


User provided reference genes

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