Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 3.8e-108 394.8 193 100.0
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 1.7e-105 386.0 193 96.9
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 2.3e-105 385.6 193 97.4
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 2.3e-105 385.6 193 97.9
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 1.3e-103 379.8 193 96.9
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 1.3e-103 379.8 193 95.9
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 8.1e-103 377.1 193 92.7
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 2.6e-101 372.1 193 92.2
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 2.6e-101 372.1 193 92.2
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 2.6e-101 372.1 193 92.2
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 4.2e-99 364.8 193 89.6
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 2.5e-96 355.5 193 88.6
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 4.3e-96 354.8 193 87.0
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 9.6e-96 353.6 193 88.6
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 2.1e-95 352.4 193 87.6
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 2.1e-95 352.4 193 87.6
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 2.8e-95 352.1 193 86.5
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 3.7e-95 351.7 193 86.0
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 6.2e-95 350.9 193 85.5
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 8.1e-95 350.5 193 87.0
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 1.1e-94 350.1 193 87.6
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 1.4e-94 349.7 193 86.5
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 2.4e-94 349.0 191 86.9
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 2.4e-94 349.0 193 86.5
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 3.1e-94 348.6 193 86.5
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 4.0e-94 348.2 193 85.0
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 4.0e-94 348.2 193 85.0
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 4.0e-94 348.2 193 86.0
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 6.9e-94 347.4 193 85.0
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 1.2e-93 346.7 193 85.0
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 1.5e-93 346.3 199 86.4
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 1.5e-93 346.3 193 86.0
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 1.5e-93 346.3 193 85.5
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 2.0e-93 345.9 193 84.5
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 2.0e-93 345.9 190 85.8
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 2.0e-93 345.9 193 83.9
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 2.6e-93 345.5 192 84.9
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 3.4e-93 345.1 193 84.5
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 3.4e-93 345.1 193 84.5
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 4.5e-93 344.7 193 84.5
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 5.8e-93 344.4 190 85.3
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 5.8e-93 344.4 190 85.3
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 5.8e-93 344.4 190 85.8
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 5.8e-93 344.4 194 86.6
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 7.6e-93 344.0 193 82.9
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 2.2e-92 342.4 190 84.7
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 2.2e-92 342.4 190 85.8
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 6.4e-92 340.9 193 84.5
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 8.4e-92 340.5 193 85.0
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 1.4e-91 339.7 193 83.9
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 1.9e-91 339.3 193 82.9
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 2.5e-91 339.0 190 85.3
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 2.5e-91 339.0 193 82.9
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 2.5e-91 339.0 193 84.5
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 3.2e-91 338.6 190 85.3
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 5.5e-91 337.8 190 84.7
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 9.3e-91 337.0 194 83.0
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 9.3e-91 337.0 193 82.9
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 1.6e-90 336.3 193 83.4
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 1.6e-90 336.3 190 84.2
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 1.6e-90 336.3 190 84.2
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 2.1e-90 335.9 193 81.9
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 4.6e-90 334.7 190 83.7
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 6.0e-90 334.3 190 83.2
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 1.0e-89 333.6 190 83.2
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 2.3e-89 332.4 190 82.1
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 3.9e-89 331.6 193 82.4
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 5.1e-89 331.3 219 74.0
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 8.7e-89 330.5 193 81.3
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 1.1e-88 330.1 193 80.3
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 1.1e-88 330.1 197 80.7
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 1.5e-88 329.7 193 81.3
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 1.9e-88 329.3 193 83.4
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 1.9e-88 329.3 193 83.4
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 2.5e-88 328.9 193 80.3
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 9.6e-88 327.0 193 80.8
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 2.8e-87 325.5 232 70.3
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 4.8e-87 324.7 182 85.7
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 3.1e-86 322.0 190 80.5
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 4.0e-86 321.6 247 68.0
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 9.0e-86 320.5 193 80.3
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 1.5e-85 319.7 193 78.8
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.5e-85 318.2 210 74.3
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 1.1e-83 313.5 177 80.8
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 3.2e-83 312.0 190 78.4
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 7.1e-83 310.8 193 79.3
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 1.2e-82 310.1 177 80.2
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 1.6e-82 309.7 197 79.2
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 7.9e-82 307.4 170 84.7
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 1.8e-81 306.2 164 87.2
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 9.7e-80 300.4 164 82.3
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 4.8e-79 298.1 192 75.5
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 8.2e-79 297.4 190 77.4
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 1.1e-78 297.0 177 76.3
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 2.4e-78 295.8 194 75.8
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 2.9e-76 288.9 190 71.1
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 5.5e-75 284.6 159 86.2
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.2e-74 283.5 167 81.4
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 1.0e-68 263.8 164 79.3
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 1.1e-67 260.4 159 79.2
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 5.5e-67 258.1 158 80.4
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 2.1e-66 256.1 139 87.8
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 1.4e-65 253.4 134 88.8
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 6.7e-65 251.1 156 78.2
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 3.7e-63 245.4 177 66.1
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 1.8e-62 243.0 194 63.9
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 7.7e-61 237.7 230 57.0
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 1.6e-58 229.9 112 98.2
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 2.1e-58 229.6 170 62.4
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 3.6e-58 228.8 190 58.9
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 1.7e-55 219.9 173 59.5
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 1.8e-54 216.5 133 79.7
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 1.2e-53 213.8 190 60.5
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 1.5e-51 206.8 178 53.9
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 5.2e-49 198.4 166 58.4
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 8.8e-49 197.6 166 60.2
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 3.2e-43 179.1 142 55.6
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 3.2e-43 179.1 131 67.9
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 6.3e-39 164.9 144 52.1
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 1.3e-36 157.1 108 65.7
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 4.6e-29 132.1 126 55.6
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 2.3e-28 129.8 135 54.8
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 2.9e-28 129.4 167 44.9
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.2e-24 117.5 135 52.6
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 2.9e-23 112.8 132 49.2
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.1e-22 109.0 70 74.3
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 8.6e-20 101.3 219 37.9
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 7.3e-19 98.2 123 48.0
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.3e-17 93.2 135 43.0
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 4.0e-17 92.4 53 86.8
COL.COLO4_22055 Corchorus olitorius HOM05D005644 ORTHO05D007092 1.2e-13 80.9 50 80.0
Hma1.2p1_0450F.1_g155660 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 3.5e-13 79.3 62 61.3
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 4.6e-13 79.0 57 66.7
Thecc.08G151500 Theobroma cacao HOM05D005644 ORTHO05D007092 4.4e-08 62.4 33 81.8
MBI16_g04464_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 7.1e-06 55.1 102 36.3


User provided reference genes

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