Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 7.4e-65 250.4 125 100.0
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 9.1e-63 243.4 125 96.0
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.6e-59 231.5 125 92.0
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 6.1e-59 230.7 125 91.2
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.5e-46 188.0 125 74.4
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.2e-44 181.8 126 75.4
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 5.5e-44 181.0 126 75.4
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 5.5e-44 181.0 126 75.4
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 7.2e-44 180.6 126 74.6
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 7.2e-44 180.6 126 74.6
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-43 179.9 126 74.6
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 2.1e-43 179.1 126 74.6
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 2.1e-43 179.1 126 74.6
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 3.6e-43 178.3 126 74.6
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 3.6e-43 178.3 126 73.8
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 3.6e-43 178.3 126 74.6
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.7e-43 177.9 125 73.6
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 6.1e-43 177.6 126 73.8
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 8.0e-43 177.2 126 73.0
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 8.0e-43 177.2 126 73.8
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.0e-42 176.8 125 72.0
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 1.0e-42 176.8 126 73.8
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.0e-42 176.8 126 73.0
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.3e-42 175.6 126 73.0
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 4.0e-42 174.9 126 73.0
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 4.0e-42 174.9 126 73.0
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 4.0e-42 174.9 126 73.0
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 6.8e-42 174.1 126 72.2
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 6.8e-42 174.1 126 73.8
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 3.4e-41 171.8 126 69.8
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 4.4e-41 171.4 126 69.8
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 4.4e-41 171.4 126 69.8
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 4.4e-41 171.4 126 69.8
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 4.4e-41 171.4 126 69.8
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 4.4e-41 171.4 126 69.8
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 1.7e-40 169.5 126 69.8
Thhalv10022919m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.8e-32 142.1 126 67.5
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.0e-29 133.7 127 59.8
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 3.6e-27 125.2 132 58.3
AT2G18200 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 7.8e-22 107.5 80 72.5
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 8.0e-19 97.4 126 49.2
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 2.3e-18 95.9 128 46.1
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 6.8e-18 94.4 128 47.7
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 1.2e-17 93.6 127 47.2
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 2.0e-17 92.8 124 46.0
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.6e-17 92.4 104 50.0
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 2.6e-17 92.4 138 41.3
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 3.4e-17 92.0 127 46.5
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 4.4e-17 91.7 144 41.7
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 5.8e-17 91.3 125 46.4
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 7.5e-17 90.9 129 45.7
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 9.8e-17 90.5 135 45.9
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 1.3e-16 90.1 140 43.6
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 1.3e-16 90.1 131 43.5
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.2e-16 89.4 140 44.3
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 2.2e-16 89.4 140 44.3
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 2.9e-16 89.0 131 47.3
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 3.7e-16 88.6 127 45.7
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 6.4e-16 87.8 138 44.2
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 8.3e-16 87.4 141 44.7
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 1.1e-15 87.0 130 39.2
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.1e-15 87.0 129 46.5
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.4e-15 86.7 143 43.4
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 1.4e-15 86.7 117 44.4
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 1.9e-15 86.3 122 45.9
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 3.2e-15 85.5 136 43.4
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 3.2e-15 85.5 130 46.9
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 4.1e-15 85.1 130 44.6
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 4.1e-15 85.1 139 43.2
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 5.4e-15 84.7 127 44.1
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 5.4e-15 84.7 125 44.8
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 5.4e-15 84.7 129 42.6
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 7.0e-15 84.3 125 45.6
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 7.0e-15 84.3 122 45.1
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 7.0e-15 84.3 124 43.5
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 1.2e-14 83.6 122 42.6
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 1.6e-14 83.2 119 43.7
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 1.6e-14 83.2 128 43.8
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.1e-14 82.8 132 42.4
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 2.1e-14 82.8 130 45.4
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 2.1e-14 82.8 127 43.3
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 2.7e-14 82.4 131 45.0
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 3.5e-14 82.0 123 42.3
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 3.5e-14 82.0 134 42.5
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 3.5e-14 82.0 123 44.7
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 4.6e-14 81.6 130 44.6
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 7.8e-14 80.9 125 44.0
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 7.8e-14 80.9 125 44.8
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 1.0e-13 80.5 128 45.3
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 1.0e-13 80.5 120 43.3
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.3e-13 80.1 131 42.7
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 1.3e-13 80.1 121 41.3
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 1.7e-13 79.7 120 42.5
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 1.7e-13 79.7 125 43.2
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 2.3e-13 79.3 99 46.5
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 3.9e-13 78.6 127 44.1
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 3.9e-13 78.6 119 42.9
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.1e-12 77.0 121 41.3
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.1e-12 77.0 133 39.1
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 1.9e-12 76.3 131 39.7
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 2.5e-12 75.9 128 41.4
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 7.3e-12 74.3 145 37.9
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 9.5e-12 73.9 129 40.3
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 2.1e-11 72.8 115 44.3
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 2.1e-11 72.8 115 44.3
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.8e-11 72.4 131 39.7
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.8e-11 72.4 131 38.9
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 3.6e-11 72.0 121 42.1
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 4.7e-11 71.6 132 37.1
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 4.7e-11 71.6 129 34.9
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 6.2e-11 71.2 67 55.2
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 6.2e-11 71.2 131 38.9
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 6.2e-11 71.2 133 39.1
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 8.1e-11 70.9 126 41.3
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 1.1e-10 70.5 130 40.0
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 1.1e-10 70.5 130 40.0
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 1.1e-10 70.5 130 40.0
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 1.4e-10 70.1 138 37.7
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 4.0e-10 68.6 127 37.8
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 5.2e-10 68.2 129 37.2
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 5.2e-10 68.2 130 39.2
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 5.2e-10 68.2 130 39.2
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 6.8e-10 67.8 126 36.5
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 6.8e-10 67.8 128 36.7
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 8.9e-10 67.4 116 38.8
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 1.2e-09 67.0 116 38.8
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-09 67.0 132 39.4
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 1.2e-09 67.0 113 42.5
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 1.5e-09 66.6 130 38.5
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 1.5e-09 66.6 126 37.3
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.5e-09 66.6 119 41.2
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 2.0e-09 66.2 126 37.3
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 3.4e-09 65.5 112 42.9
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 7.5e-09 64.3 124 39.5
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 7.5e-09 64.3 124 39.5
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 9.9e-09 63.9 133 36.8
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 2.2e-08 62.8 126 34.9
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 3.7e-08 62.0 131 34.4
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 4.9e-08 61.6 132 33.3
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 4.9e-08 61.6 132 33.3
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 4.9e-08 61.6 132 33.3
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 6.4e-08 61.2 51 58.8
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 6.4e-08 61.2 124 38.7
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 8.3e-08 60.8 110 42.7
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 8.3e-08 60.8 124 38.7
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 1.1e-07 60.5 111 44.1
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.1e-07 60.5 115 39.1
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.4e-07 60.1 127 37.0
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 1.9e-07 59.7 122 38.5
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.2e-07 58.9 121 38.0
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 4.1e-07 58.5 157 31.2
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 5.4e-07 58.2 130 37.7
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 5.4e-07 58.2 128 36.7
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 5.4e-07 58.2 126 36.5
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 5.4e-07 58.2 123 38.2
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 7.1e-07 57.8 132 35.6
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 7.1e-07 57.8 123 39.0
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 7.1e-07 57.8 51 52.9
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 9.2e-07 57.4 128 35.2
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 9.2e-07 57.4 119 36.1
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.1e-06 56.2 116 37.1
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 2.1e-06 56.2 122 36.9
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 3.5e-06 55.5 75 48.0
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.5e-06 55.5 115 37.4
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.6e-06 55.1 129 32.6
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 4.6e-06 55.1 120 34.2
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 6.0e-06 54.7 112 35.7
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 7.8e-06 54.3 39 56.4


User provided reference genes

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