Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC3t18161H Brassica oleracea HOM05D000697 ORTHO05D010185 2.4e-15 84.3 42 100.0
BraA06t26266Z Brassica rapa HOM05D000697 ORTHO05D010185 2.4e-15 84.3 42 100.0
Carub.0003s3231 Capsella rubella HOM05D000697 ORTHO05D010185 2.4e-15 84.3 42 100.0
BolC9t54271H Brassica oleracea HOM05D000697 ORTHO05D010185 2.0e-14 81.3 42 97.6
BraA07t28050Z Brassica rapa HOM05D000697 ORTHO05D010185 2.0e-14 81.3 42 97.6
BraA09t36820Z Brassica rapa HOM05D000697 ORTHO05D010185 2.0e-14 81.3 42 97.6
Aa31LG8G15820 Aethionema arabicum HOM05D000697 ORTHO05D010185 4.9e-13 76.6 39 97.4
Potri.007G020000 Populus trichocarpa HOM05D000697 ORTHO05D010185 2.7e-11 70.9 42 83.3
Gohir.A11G181800 Gossypium hirsutum HOM05D000697 ORTHO05D000169 4.6e-11 70.1 38 86.8
Manes.02G097800 Manihot esculenta HOM05D000697 ORTHO05D010185 6.0e-11 69.7 42 81.0
MBI10_g00750_MAGBIO Magnolia biondii HOM05D000697 ORTHO05D000169 1.3e-10 68.6 40 77.5
BolC7t40872H Brassica oleracea HOM05D000697 ORTHO05D000169 1.8e-10 68.2 41 87.8
Lj4g0025152 Lotus japonicus HOM05D000697 ORTHO05D000169 3.0e-10 67.4 36 86.1
Carub.0002s2224 Capsella rubella HOM05D000697 ORTHO05D010185 5.1e-10 66.6 42 78.6
CARHR068750 Cardamine hirsuta HOM05D000697 ORTHO05D010185 5.1e-10 66.6 42 78.6
Gohir.D11G188600 Gossypium hirsutum HOM05D000697 ORTHO05D010185 6.7e-10 66.2 42 78.6
FAN19G2851 Fragaria x ananassa HOM05D000697 ORTHO05D000169 8.7e-10 65.9 40 77.5
FAN26G2107 Fragaria x ananassa HOM05D000697 ORTHO05D000169 8.7e-10 65.9 40 77.5
FAN28G2503 Fragaria x ananassa HOM05D000697 ORTHO05D000169 8.7e-10 65.9 40 77.5
Gohir.A12G062300 Gossypium hirsutum HOM05D000697 ORTHO05D010185 8.7e-10 65.9 42 78.6
Thecc.01G028200 Theobroma cacao HOM05D000697 ORTHO05D010185 8.7e-10 65.9 42 78.6
Gorai.007G200600 Gossypium raimondii HOM05D000697 ORTHO05D000169 1.5e-09 65.1 38 81.6
CiPaw.08G138600 Carya illinoinensis HOM05D000697 ORTHO05D010185 1.9e-09 64.7 42 76.2
CAN.G358.36 Capsicum annuum HOM05D000697 ORTHO05D010185 2.5e-09 64.3 42 73.8
CiPaw.06G133300 Carya illinoinensis HOM05D000697 ORTHO05D010185 2.5e-09 64.3 42 73.8
Cc10_g02470 Coffea canephora HOM05D000697 ORTHO05D010185 2.5e-09 64.3 42 76.2
Prupe.7G160500 Prunus persica HOM05D000697 ORTHO05D010185 2.5e-09 64.3 42 78.6
CiPaw.07G157300 Carya illinoinensis HOM05D000697 ORTHO05D010185 3.3e-09 63.9 42 76.2
CiPaw.08G060300 Carya illinoinensis HOM05D000697 ORTHO05D010185 3.3e-09 63.9 42 76.2
Glyma.05G157100 Glycine max HOM05D000697 ORTHO05D010185 3.3e-09 63.9 41 75.6
Glyma.08G115251 Glycine max HOM05D000697 ORTHO05D010185 3.3e-09 63.9 41 75.6
Glyma.14G071500 Glycine max HOM05D000697 ORTHO05D010185 3.3e-09 63.9 42 76.2
Glyma.17G253132 Glycine max HOM05D000697 ORTHO05D010185 3.3e-09 63.9 42 76.2
Lalb_Chr14g0369491 Lupinus albus HOM05D000697 ORTHO05D010185 3.3e-09 63.9 42 76.2
Manes.05G155332 Manihot esculenta HOM05D000697 ORTHO05D010185 3.3e-09 63.9 42 76.2
Manes.18G021001 Manihot esculenta HOM05D000697 ORTHO05D010185 3.3e-09 63.9 42 76.2
Phvul.001G011900 Phaseolus vulgaris HOM05D000697 ORTHO05D010185 3.3e-09 63.9 42 76.2
Phvul.002G237700 Phaseolus vulgaris HOM05D000697 ORTHO05D010185 3.3e-09 63.9 41 75.6
Potri.005G119400 Populus trichocarpa HOM05D000697 ORTHO05D010185 3.3e-09 63.9 43 79.1
Prupe.1G374500 Prunus persica HOM05D000697 ORTHO05D010185 3.3e-09 63.9 42 78.6
CiPaw.07G050800 Carya illinoinensis HOM05D000697 ORTHO05D010185 5.6e-09 63.2 42 73.8
arahy.Tifrunner.gnm1.ann1.T95EUW Arachis hypogaea HOM05D000697 ORTHO05D010185 7.4e-09 62.8 38 78.9
FAN27G0060 Fragaria x ananassa HOM05D000697 ORTHO05D010185 7.4e-09 62.8 38 81.6
Gohir.A06G007100 Gossypium hirsutum HOM05D000697 ORTHO05D010185 7.4e-09 62.8 42 73.8
Gohir.D05G194400 Gossypium hirsutum HOM05D000697 ORTHO05D010185 7.4e-09 62.8 42 73.8
Potri.002G032000 Populus trichocarpa HOM05D000697 ORTHO05D010185 7.4e-09 62.8 42 73.8
Thecc.08G033000 Theobroma cacao HOM05D000697 ORTHO05D010185 7.4e-09 62.8 42 73.8
CAN.G1373.26 Capsicum annuum HOM05D000697 ORTHO05D010185 9.6e-09 62.4 37 78.4
vmacro04298 Vaccinium macrocarpon HOM05D000697 ORTHO05D010185 9.6e-09 62.4 38 78.9
Manes.04G074110 Manihot esculenta HOM05D000697 ORTHO05D010185 1.3e-08 62.0 42 71.4
CAN.G568.4 Capsicum annuum HOM05D000697 ORTHO05D010185 1.6e-08 61.6 42 69.0
ClCG05G018700 Citrullus lanatus HOM05D000697 ORTHO05D010185 1.6e-08 61.6 40 75.0
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 1.6e-08 61.6 35 82.9
Manes.11G084900 Manihot esculenta HOM05D000697 ORTHO05D010185 2.1e-08 61.2 42 69.0
Potri.009G119650 Populus trichocarpa HOM05D000697 ORTHO05D010185 2.1e-08 61.2 42 69.0
Migut.H02516 Erythranthe guttata HOM05D000697 ORTHO05D010185 2.8e-08 60.8 42 76.2
Eucgr.I02397 Eucalyptus grandis HOM05D000697 ORTHO05D010185 3.7e-08 60.5 41 78.0
FAN15G1852 Fragaria x ananassa HOM05D000697 ORTHO05D000169 3.7e-08 60.5 38 78.9
FAN26G2173 Fragaria x ananassa HOM05D000697 ORTHO05D010185 3.7e-08 60.5 38 78.9
CiPaw.05G068000 Carya illinoinensis HOM05D000697 ORTHO05D010185 4.8e-08 60.1 42 71.4
Potri.004G158150 Populus trichocarpa HOM05D000697 ORTHO05D010185 4.8e-08 60.1 42 66.7
CAN.G1544.1 Capsicum annuum HOM05D000697 ORTHO05D010185 6.2e-08 59.7 42 66.7
Migut.N00473 Erythranthe guttata HOM05D000697 ORTHO05D010185 6.2e-08 59.7 42 73.8
Gohir.D01G102800 Gossypium hirsutum HOM05D000697 ORTHO05D010185 6.2e-08 59.7 38 73.7
Sed0018930 Sechium edule HOM05D000697 ORTHO05D000169 6.2e-08 59.7 41 75.6
Potri.005G231250 Populus trichocarpa HOM05D000697 ORTHO05D010185 8.2e-08 59.3 38 71.1
Thecc.02G081000 Theobroma cacao HOM05D000697 ORTHO05D010185 8.2e-08 59.3 42 69.0
Gohir.D02G095800 Gossypium hirsutum HOM05D000697 ORTHO05D010185 1.1e-07 58.9 38 73.7
Migut.C00767 Erythranthe guttata HOM05D000697 ORTHO05D010185 1.8e-07 58.2 39 74.4
Glyma.11G114900 Glycine max HOM05D000697 ORTHO05D010185 1.8e-07 58.2 42 66.7
Glyma.12G040700 Glycine max HOM05D000697 ORTHO05D010185 1.8e-07 58.2 42 66.7
Phvul.009G005900 Phaseolus vulgaris HOM05D000697 ORTHO05D010185 1.8e-07 58.2 42 66.7
Prupe.8G091700 Prunus persica HOM05D000697 ORTHO05D010185 2.4e-07 57.8 42 69.0
Carub.0007s0570 Capsella rubella HOM05D000697 ORTHO05D010185 3.1e-07 57.4 39 71.8
ClCG01G019930 Citrullus lanatus HOM05D000697 ORTHO05D010185 3.1e-07 57.4 38 73.7
Migut.B00215 Erythranthe guttata HOM05D000697 ORTHO05D010185 4.0e-07 57.0 36 72.2
SGA_v2.0_scaffold11G05844 Striga asiatica HOM05D000697 ORTHO05D010185 4.0e-07 57.0 38 73.7
MD05G1062200 Malus domestica HOM05D000697 ORTHO05D000169 5.3e-07 56.6 38 73.7
Gohir.D12G062100 Gossypium hirsutum HOM05D000697 ORTHO05D000169 6.9e-07 56.2 35 80.0
Gorai.008G065300 Gossypium raimondii HOM05D000697 ORTHO05D000169 6.9e-07 56.2 35 80.0
Lalb_Chr11g0062211 Lupinus albus HOM05D000697 ORTHO05D010185 1.2e-06 55.5 38 71.1
Glyma.04G010400 Glycine max HOM05D000697 ORTHO05D010185 1.5e-06 55.1 42 64.3
FAN20G0406 Fragaria x ananassa HOM05D000697 ORTHO05D000169 2.0e-06 54.7 38 68.4
FAN24G3114 Fragaria x ananassa HOM05D000697 ORTHO05D000169 2.0e-06 54.7 38 68.4
FAN27G3145 Fragaria x ananassa HOM05D000697 ORTHO05D000169 2.0e-06 54.7 38 68.4
Gohir.D02G217700 Gossypium hirsutum HOM05D000697 ORTHO05D010185 2.0e-06 54.7 42 64.3
HanXRQChr09g0269581 Helianthus annuus HOM05D000697 ORTHO05D000169 2.6e-06 54.3 35 77.1
MD08G1025800 Malus domestica HOM05D000697 ORTHO05D000169 2.6e-06 54.3 35 80.0
MD15G1022500 Malus domestica HOM05D000697 ORTHO05D000169 2.6e-06 54.3 35 80.0
Phvul.011G042700 Phaseolus vulgaris HOM05D000697 ORTHO05D010185 2.6e-06 54.3 42 61.9
Lalb_Chr23g0266511 Lupinus albus HOM05D000697 ORTHO05D010185 3.4e-06 53.9 38 65.8
Glyma.06G010300 Glycine max HOM05D000697 ORTHO05D010185 4.5e-06 53.5 43 65.1
Gohir.A05G190900 Gossypium hirsutum HOM05D000697 ORTHO05D000169 5.8e-06 53.1 35 74.3
Gohir.D06G003300 Gossypium hirsutum HOM05D000697 ORTHO05D000169 5.8e-06 53.1 35 74.3
Gorai.005G109600 Gossypium raimondii HOM05D000697 ORTHO05D000169 5.8e-06 53.1 35 74.3
Gorai.009G199300 Gossypium raimondii HOM05D000697 ORTHO05D000169 5.8e-06 53.1 35 74.3
Gorai.010G008000 Gossypium raimondii HOM05D000697 ORTHO05D000169 5.8e-06 53.1 35 74.3


User provided reference genes

Program Settings