Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3193 Capsella rubella HOM05D004095 ORTHO05D003197 1.7e-169 599.4 331 100.0
AT2G17787 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 1.0e-121 440.7 332 73.2
AL3G50810 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 2.8e-103 379.4 339 69.6
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 1.0e-65 254.6 341 51.0
Thhalv10022767m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 1.8e-65 253.8 389 49.9
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 1.2e-61 241.1 345 52.2
BraA07t28113Z Brassica rapa HOM05D004095 ORTHO05D003197 2.0e-61 240.4 345 51.0
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 2.2e-60 236.9 350 49.4
C07p05400 Brassica napus HOM05D004095 ORTHO05D003197 2.0e-56 223.8 371 44.7
BolC7t40940H Brassica oleracea HOM05D004095 ORTHO05D003197 1.3e-55 221.1 371 44.5
BcaB07g31703 Brassica carinata HOM05D004095 ORTHO05D003197 2.9e-52 209.9 350 49.7
A09p11580 Brassica napus HOM05D004095 ORTHO05D003197 2.8e-50 203.4 378 41.5
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 8.9e-49 198.4 387 41.1
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 3.5e-45 186.4 372 40.3
BcaC04g22942 Brassica carinata HOM05D004095 ORTHO05D003197 2.3e-44 183.7 340 45.6
BraA09t36805Z Brassica rapa HOM05D004095 ORTHO05D003197 2.3e-41 173.7 374 38.5
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 2.0e-40 170.6 370 38.4
C09p13630 Brassica napus HOM05D004095 ORTHO05D003197 5.8e-40 169.1 340 40.6
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 7.0e-38 162.2 401 34.2
BraA03t15466Z Brassica rapa HOM05D004095 ORTHO05D003197 1.6e-37 161.0 405 35.6
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 7.5e-32 142.1 372 36.8
AL7G15100 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 2.9e-31 140.2 396 39.1
Aa31LG6G12890 Aethionema arabicum HOM05D004095 ORTHO05D003197 8.3e-31 138.7 383 36.0
Thhalv10027062m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 1.4e-30 137.9 291 41.2
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 5.4e-30 136.0 362 39.0
BcaNung05051 Brassica carinata HOM05D004095 ORTHO05D003197 1.2e-29 134.8 390 32.8
Sp7g33720 Schrenkiella parvula HOM05D004095 ORTHO05D003197 1.6e-29 134.4 387 37.0
AT4G35940 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 2.5e-27 127.1 433 30.9
A01p02760 Brassica napus HOM05D004095 ORTHO05D003197 1.6e-26 124.4 362 39.2
BcaNung00778 Brassica carinata HOM05D004095 ORTHO05D003197 1.1e-25 121.7 392 33.2
Carub.0007s0428 Capsella rubella HOM05D004095 ORTHO05D003197 1.4e-25 121.3 392 30.6
C07p61450 Brassica napus HOM05D004095 ORTHO05D003197 3.1e-25 120.2 390 34.1
BraA01t00262Z Brassica rapa HOM05D004095 ORTHO05D003197 3.1e-25 120.2 362 38.7
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 9.9e-24 115.2 343 37.3
BolC7t46570H Brassica oleracea HOM05D004095 ORTHO05D003197 4.9e-23 112.8 381 35.2
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 3.5e-21 106.7 363 36.4
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 4.6e-21 106.3 364 31.3
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 1.9e-19 100.9 360 33.9
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 3.3e-19 100.1 370 29.5
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.1e-18 97.4 362 35.6
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 4.7e-18 96.3 366 30.1
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 6.2e-18 95.9 361 35.2
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 1.9e-14 84.3 393 29.0
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 1.6e-13 81.3 349 29.2
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.3e-12 78.2 360 27.8
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 3.9e-12 76.6 347 28.2
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.1e-11 75.1 364 28.6
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 1.9e-11 74.3 257 33.9
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 2.5e-11 73.9 357 30.8
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 3.3e-11 73.6 347 29.4
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 5.6e-11 72.8 358 29.9
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 7.3e-11 72.4 358 27.4
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 9.6e-11 72.0 100 39.0
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 9.6e-11 72.0 101 40.6
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 9.6e-11 72.0 347 26.8
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 1.6e-10 71.2 363 25.9
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 2.1e-10 70.9 355 30.4
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.8e-10 70.5 101 39.6
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.6e-10 70.1 364 27.2
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 3.1e-09 67.0 78 42.3
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 4.0e-09 66.6 365 31.0
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 5.3e-09 66.2 71 36.6
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 9.0e-09 65.5 93 39.8
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 1.5e-08 64.7 78 44.9
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.5e-08 64.7 359 25.6
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 2.0e-08 64.3 376 30.6
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 5.8e-08 62.8 80 38.8
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 9.9e-08 62.0 380 27.6
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 1.7e-07 61.2 351 26.8
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 1.7e-07 61.2 117 35.9
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 1.7e-07 61.2 338 25.7
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 3.8e-07 60.1 108 36.1
GSVIVG01024025001 Vitis vinifera HOM05D004095 ORTHO05D003197 3.8e-07 60.1 77 40.3
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 6.4e-07 59.3 85 35.3
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 6.4e-07 59.3 265 27.9
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 6.4e-07 59.3 352 31.0
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 6.4e-07 59.3 78 39.7
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 8.4e-07 58.9 367 26.4
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 1.1e-06 58.5 381 23.6
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 1.9e-06 57.8 76 42.1
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 1.9e-06 57.8 74 39.2
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 2.4e-06 57.4 110 35.5
RcHm_v2.0_Chr6g0303321 Rosa chinensis HOM05D004095 ORTHO05D003197 2.4e-06 57.4 76 38.2
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 4.2e-06 56.6 75 36.0
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 4.2e-06 56.6 78 34.6
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 4.2e-06 56.6 120 31.7
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 4.2e-06 56.6 157 38.2
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 4.2e-06 56.6 356 27.8
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 4.2e-06 56.6 353 26.9
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 5.4e-06 56.2 117 34.2
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 5.4e-06 56.2 79 35.4
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 7.1e-06 55.8 77 37.7
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 7.1e-06 55.8 77 37.7
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 9.3e-06 55.5 309 26.2
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 9.3e-06 55.5 75 37.3
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 9.3e-06 55.5 81 35.8


User provided reference genes

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