Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3179 Capsella rubella HOM05D007035 ORTHO05D008774 3.5e-120 434.9 206 100.0
AT2G17695 Arabidopsis thaliana HOM05D007035 ORTHO05D008774 4.0e-116 421.4 206 96.1
AL3G50680 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 2.9e-114 415.2 206 95.1
Sp3g31080 Schrenkiella parvula HOM05D007035 ORTHO05D008774 6.2e-109 397.5 205 90.2
Thhalv10022849m.g Eutrema salsugineum HOM05D007035 ORTHO05D008774 1.5e-107 392.9 205 89.3
BraA06t26305Z Brassica rapa HOM05D007035 ORTHO05D008774 2.0e-107 392.5 205 86.8
C03p58600 Brassica napus HOM05D007035 ORTHO05D008774 2.6e-107 392.1 205 86.8
A06p33710 Brassica napus HOM05D007035 ORTHO05D008774 5.8e-107 391.0 205 86.3
BcaC01g02899 Brassica carinata HOM05D007035 ORTHO05D008774 1.7e-106 389.4 205 86.8
BolC3t18121H Brassica oleracea HOM05D007035 ORTHO05D008774 1.7e-106 389.4 205 86.8
BcaB08g34751 Brassica carinata HOM05D007035 ORTHO05D008774 6.4e-106 387.5 205 86.8
THA.LOC104807437 Tarenaya hassleriana HOM05D007035 ORTHO05D008774 1.4e-97 359.8 206 80.1
Aa31LG8G14960 Aethionema arabicum HOM05D000088 ORTHO05D000933 3.9e-87 325.1 185 80.0
CiPaw.07G005600 Carya illinoinensis HOM05D007035 ORTHO05D008774 1.1e-84 317.0 205 68.3
Thecc.01G009700 Theobroma cacao HOM05D007035 ORTHO05D008774 3.1e-84 315.5 204 69.1
Gohir.A02G175400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 1.2e-83 313.5 204 68.1
Gorai.003G004700 Gossypium raimondii HOM05D007035 ORTHO05D008774 1.5e-83 313.2 204 68.1
Gohir.D03G004400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 3.4e-83 312.0 204 68.1
Cfa015701 Carpinus fangiana HOM05D007035 ORTHO05D008774 7.6e-83 310.8 205 66.3
Atru.chr3.931 Acer truncatum HOM05D007035 ORTHO05D008774 1.0e-82 310.5 207 67.1
Ciclev10026505m.g Citrus clementina HOM05D007035 ORTHO05D008774 1.3e-82 310.1 206 67.5
QL06p052348 Quercus lobata HOM05D007035 ORTHO05D008774 1.3e-82 310.1 205 66.3
CSS0018213 Camellia sinensis var. sinensis HOM05D007035 ORTHO05D008774 2.9e-82 308.9 204 67.2
Eucgr.J02513 Eucalyptus grandis HOM05D007035 ORTHO05D008774 2.9e-82 308.9 208 67.8
Manes.02G111400 Manihot esculenta HOM05D007035 ORTHO05D008774 8.4e-82 307.4 206 65.5
MD02G1242600 Malus domestica HOM05D007035 ORTHO05D008774 1.9e-81 306.2 205 64.4
Rhsim08G0078500 Rhododendron simsii HOM05D007035 ORTHO05D008774 1.9e-81 306.2 203 65.5
Medtr8g074720 Medicago truncatula HOM05D007035 ORTHO05D008774 2.5e-81 305.8 205 65.4
Actinidia17600 Actinidia chinensis HOM05D007035 ORTHO05D008774 3.2e-81 305.4 204 64.7
Phvul.003G267600 Phaseolus vulgaris HOM05D007035 ORTHO05D008774 7.1e-81 304.3 205 63.9
Prupe.7G176600 Prunus persica HOM05D007035 ORTHO05D008774 7.1e-81 304.3 204 66.2
Lalb_Chr05g0229721 Lupinus albus HOM05D007035 ORTHO05D008774 3.5e-80 302.0 205 63.4
Nitab4.5_0001696g0080 Nicotiana tabacum HOM05D007035 ORTHO05D008774 3.5e-80 302.0 204 65.7
vmacro18445 Vaccinium macrocarpon HOM05D007035 ORTHO05D008774 4.6e-80 301.6 203 64.5
Ca_03644_v3 Cicer arietinum L. HOM05D007035 ORTHO05D008774 7.9e-80 300.8 205 62.4
FvH4_1g10900 Fragaria vesca HOM05D007035 ORTHO05D008774 1.3e-79 300.1 204 63.7
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 2.3e-79 299.3 204 63.7
Nn6g31845 Nelumbo nucifera HOM05D007035 ORTHO05D008774 3.0e-79 298.9 204 63.7
TAR628G1604 Trochodendron aralioides HOM05D007035 ORTHO05D008774 3.0e-79 298.9 202 64.9
TWI59G1021 Tripterygium wilfordii HOM05D007035 ORTHO05D008774 3.9e-79 298.5 202 65.3
CAN.G890.13 Capsicum annuum HOM05D007035 ORTHO05D008774 5.1e-79 298.1 204 65.2
FAN19G1923 Fragaria x ananassa HOM05D007035 ORTHO05D008774 5.1e-79 298.1 204 63.2
Psat4g103040 Pisum sativum HOM05D007035 ORTHO05D008774 8.7e-79 297.4 205 62.4
FAN26G0170 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.1e-78 297.0 204 63.2
Hma1.2p1_0315F.1_g122740 Hydrangea macrophylla HOM05D007035 ORTHO05D008774 1.1e-78 297.0 203 64.5
Lj4g0012539 Lotus japonicus HOM05D007035 ORTHO05D008774 1.1e-78 297.0 205 62.4
Potri.005G105500 Populus trichocarpa HOM05D007035 ORTHO05D008774 1.1e-78 297.0 206 65.5
FAN23G2784 Fragaria x ananassa HOM05D007035 ORTHO05D008774 4.3e-78 295.0 204 63.2
PGR102G2581 Punica granatum HOM05D007035 ORTHO05D008774 4.3e-78 295.0 204 63.2
PGSC0003DMG400001578 Solanum tuberosum HOM05D007035 ORTHO05D008774 5.7e-78 294.7 204 65.7
Solyc02g083180.4 Solanum lycopersicum HOM05D007035 ORTHO05D008774 1.3e-77 293.5 204 65.7
Sopen02g027940 Solanum pennellii HOM05D007035 ORTHO05D008774 1.3e-77 293.5 204 65.7
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 6.3e-77 291.2 196 64.3
EL10Ac9g22991 Beta vulgaris HOM05D007035 ORTHO05D008774 8.2e-77 290.8 203 62.1
Oeu008100.1 Olea europaea HOM05D007035 ORTHO05D008774 1.4e-76 290.0 204 63.2
arahy.Tifrunner.gnm1.ann1.JN68AD Arachis hypogaea HOM05D007035 ORTHO05D008774 2.4e-76 289.3 206 62.6
arahy.Tifrunner.gnm1.ann1.Y2NACG Arachis hypogaea HOM05D007035 ORTHO05D008774 2.4e-76 289.3 206 62.6
HanXRQChr07g0192541 Helianthus annuus HOM05D007035 ORTHO05D008774 4.1e-76 288.5 206 60.7
Ah.10g032510 Amaranthus hybridus HOM05D007035 ORTHO05D008774 5.3e-76 288.1 206 60.7
ClCG01G020680 Citrullus lanatus HOM05D007035 ORTHO05D008774 6.9e-76 287.7 205 62.4
DCAR_027629 Daucus carota HOM05D007035 ORTHO05D008774 1.2e-75 287.0 198 63.1
Lsat_1_v5_gn_2_75101 Lactuca sativa HOM05D007035 ORTHO05D008774 2.0e-75 286.2 206 61.7
MELO3C007951.2 Cucumis melo HOM05D007035 ORTHO05D008774 3.4e-75 285.4 202 62.4
Sed0013381 Sechium edule HOM05D007035 ORTHO05D008774 4.5e-75 285.0 205 61.0
GSVIVG01006258001 Vitis vinifera HOM05D007035 ORTHO05D008774 5.9e-75 284.6 204 61.3
CANSAT25G1910 Cannabis sativa HOM05D007035 ORTHO05D008774 7.6e-75 284.3 207 62.3
CsaV3_6G047600 Cucumis sativus L. HOM05D007035 ORTHO05D008774 3.8e-74 282.0 203 62.1
Cc07_g12370 Coffea canephora HOM05D007035 ORTHO05D008774 1.9e-73 279.6 206 60.7
AL3G27500 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 1.2e-72 276.9 148 86.5
SalBow5G2770 Salvia bowleyana HOM05D007035 ORTHO05D008774 4.6e-72 275.0 204 58.8
CDE09G0622 Ceratophyllum demersum HOM05D007035 ORTHO05D008774 7.9e-72 274.2 202 61.4
VMungo0251G2208 Vigna mungo HOM05D007035 ORTHO05D008774 2.3e-71 272.7 185 63.8
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 3.0e-71 272.3 203 57.6
COL.COLO4_22513 Corchorus olitorius HOM05D007035 ORTHO05D008774 3.9e-71 271.9 202 60.4
Migut.L00741 Erythranthe guttata HOM05D007035 ORTHO05D008774 5.1e-71 271.6 204 56.9
PSO675G7652 Papaver somniferum HOM05D007035 ORTHO05D008774 6.7e-71 271.2 206 59.2
Lj4A228G16 Lonicera japonica HOM05D007035 ORTHO05D008774 1.5e-70 270.0 184 63.6
PSO541G4772 Papaver somniferum HOM05D007035 ORTHO05D008774 1.5e-70 270.0 206 59.2
MBI05_g35104_MAGBIO Magnolia biondii HOM05D007035 ORTHO05D008774 6.3e-69 264.6 211 57.8
unitig_88.g27771 Utricularia gibba HOM05D007035 ORTHO05D008774 2.6e-67 259.2 205 56.6
Peaxi162Scf00300g00123 Petunia axillaris HOM05D007035 ORTHO05D008774 1.0e-66 257.3 174 66.7
ECA238G0027 Erigeron canadensis HOM05D007035 ORTHO05D008774 6.5e-66 254.6 185 60.0
Hund08627 Selenicereus undatus HOM05D007035 ORTHO05D008774 1.1e-65 253.8 203 55.7
AUR62032933 Chenopodium quinoa HOM05D007035 ORTHO05D008774 1.2e-64 250.4 165 65.5
CARHR107960 Cardamine hirsuta HOM05D007035 ORTHO05D008774 7.9e-64 247.7 121 92.6
QL06p052340 Quercus lobata HOM05D007035 ORTHO05D008774 2.3e-63 246.1 164 64.0
HPP92_014997 Vanilla planifolia HOM05D007035 ORTHO05D008774 8.8e-63 244.2 207 53.6
Glyma.16G120900 Glycine max HOM05D007035 ORTHO05D008774 2.4e-60 236.1 161 63.4
Os03g0107600 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 5.9e-59 231.5 212 52.4
Os04g0119300 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 5.9e-59 231.5 212 52.4
ATR0661G057 Amborella trichopoda HOM05D007035 ORTHO05D008774 2.2e-58 229.6 187 55.1
RcHm_v2.0_Chr2g0098161 Rosa chinensis HOM05D007035 ORTHO05D008774 6.5e-58 228.0 165 59.4
Sc20g0005390 Simmondsia chinensis HOM05D007035 ORTHO05D008774 1.6e-56 223.4 147 63.3
Zm00001eb241510 Zea mays HOM05D007035 ORTHO05D008774 1.8e-55 219.9 215 50.2
Pp3c1_37080 Physcomitrium patens HOM05D007035 ORTHO05D008774 4.4e-54 215.3 210 48.1
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 1.3e-53 213.8 145 60.7
Cpa.g.sc6.337 Carica papaya HOM05D007035 ORTHO05D008774 1.8e-52 209.9 146 63.0
MSTRG.15590 Avicennia marina HOM05D007035 ORTHO05D008774 1.2e-51 207.2 161 53.4
AUR62017739 Chenopodium quinoa HOM05D007035 ORTHO05D008774 1.9e-49 199.9 124 70.2
Mapoly0027s0184 Marchantia polymorpha HOM05D007035 ORTHO05D008774 3.0e-47 192.6 214 43.0
Aqoxy6G01870 Aquilegia oxysepala HOM05D007035 ORTHO05D008774 5.2e-47 191.8 148 57.4
Duzib147G1308 Durio zibethinus HOM05D007035 ORTHO05D008774 4.4e-46 188.7 168 51.8
SMO364G0252 Selaginella moellendorffii HOM05D007035 ORTHO05D008774 3.4e-38 162.5 160 46.2
Eucgr.J01132 Eucalyptus grandis HOM05D007035 ORTHO05D008774 3.1e-36 156.0 145 52.4
Prupe.1G268600 Prunus persica HOM05D007035 ORTHO05D008774 1.9e-33 146.7 106 55.7
Prupe.6G001100 Prunus persica HOM05D007035 ORTHO05D008774 7.2e-33 144.8 106 54.7
AagrBONN_evm.TU.Sc2ySwM_117.3401 Anthoceros agrestis HOM05D007035 ORTHO05D008774 1.0e-31 141.0 156 42.3
PRCOL_00002518 Prasinoderma coloniale HOM05D007035 ORTHO05D008774 7.5e-30 134.8 159 42.1
SEGI_40855 Sequoiadendron giganteum HOM05D007035 ORTHO05D008774 2.2e-29 133.3 168 38.1
Cre17.g720550 Chlamydomonas reinhardtii HOM05D007035 ORTHO05D008774 1.2e-24 117.5 210 32.4
MCO10G322 Micromonas commoda HOM05D007035 ORTHO05D008774 6.8e-23 111.7 147 38.1
CBR_g48433 Chara braunii HOM05D007035 ORTHO05D008774 8.9e-23 111.3 277 24.5
RcHm_v2.0_Chr5g0036401 Rosa chinensis HOM05D007035 ORTHO05D008774 1.3e-21 107.5 107 48.6
Cpa.g.sc6.336 Carica papaya HOM05D007035 ORTHO05D008774 9.5e-17 91.3 59 71.2
Peaxi162Scf00300g00119 Petunia axillaris HOM05D007035 ORTHO05D008774 1.3e-13 80.9 61 60.7
RcHm_v2.0_Chr5g0036471 Rosa chinensis HOM05D007035 ORTHO05D008774 1.2e-11 74.3 56 53.6


User provided reference genes

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