Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 4.4e-173 611.3 330 100.0
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 4.4e-133 478.4 336 82.1
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 2.5e-96 356.3 309 72.2
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.3e-84 317.4 340 65.3
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.8e-81 307.0 339 62.2
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 8.2e-79 298.1 301 66.4
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 1.5e-77 293.9 304 64.8
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 1.5e-77 293.9 304 64.5
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 2.0e-77 293.5 373 53.9
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 2.9e-76 289.7 301 66.4
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 8.2e-71 271.6 296 64.9
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 1.1e-70 271.2 296 64.9
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 2.4e-70 270.0 300 63.0
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 5.3e-70 268.9 347 54.2
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 1.2e-69 267.7 351 53.3
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.9e-68 263.1 385 49.4
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 5.5e-67 258.8 345 53.0
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.3e-65 253.4 360 46.9
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 2.0e-64 250.4 300 59.3
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 2.2e-63 246.9 299 59.9
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 2.2e-63 246.9 299 59.9
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.8e-62 243.8 351 51.0
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 3.5e-61 239.6 300 57.7
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.3e-57 226.9 355 49.0
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 8.3e-55 218.4 339 51.9
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 6.1e-50 202.2 343 45.8
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 3.4e-48 196.4 403 40.4
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 2.2e-47 193.7 386 41.2
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 1.8e-46 190.7 378 40.7
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 5.4e-46 189.1 386 42.0
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 1.2e-45 188.0 394 40.9
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.0e-45 187.2 391 41.2
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 5.0e-44 182.6 374 40.1
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.1e-43 181.4 395 39.2
A07p03430 Brassica napus HOM05D004420 ORTHO05D005048 2.5e-43 180.3 216 59.7
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.2e-42 177.9 379 38.5
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 2.1e-42 177.2 386 38.9
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 4.7e-42 176.0 377 38.5
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 4.7e-42 176.0 383 38.4
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 1.0e-41 174.9 381 38.3
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 1.0e-41 174.9 378 39.7
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 2.3e-41 173.7 272 50.7
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 2.3e-41 173.7 307 43.0
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 5.2e-41 172.6 385 37.7
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 6.8e-41 172.2 379 38.3
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 6.8e-41 172.2 379 38.3
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 1.2e-40 171.4 275 51.6
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 1.2e-40 171.4 398 36.4
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.5e-40 171.0 365 39.2
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 2.6e-40 170.2 383 38.1
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 3.4e-40 169.9 380 37.9
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 4.4e-40 169.5 275 50.5
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 5.7e-40 169.1 380 40.0
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 5.7e-40 169.1 380 40.0
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 5.7e-40 169.1 312 42.6
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 7.5e-40 168.7 375 37.9
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 1.3e-39 167.9 360 39.7
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 2.9e-39 166.8 375 37.1
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 2.9e-39 166.8 332 39.8
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 2.9e-39 166.8 356 38.2
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 8.3e-39 165.2 374 38.0
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.1e-38 164.9 332 39.5
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 2.4e-38 163.7 393 37.2
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 4.1e-38 162.9 402 36.6
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 7.0e-38 162.2 384 37.2
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 1.2e-37 161.4 377 38.5
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.2e-37 161.4 332 38.3
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.6e-37 161.0 376 37.0
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 2.0e-37 160.6 377 39.0
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.0e-37 160.6 384 37.0
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 2.7e-37 160.2 386 36.0
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.7e-37 160.2 384 37.0
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 3.5e-37 159.8 386 37.6
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 5.9e-37 159.1 307 40.4
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 5.9e-37 159.1 367 37.6
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.3e-36 157.1 383 37.6
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 3.9e-36 156.4 389 36.8
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 5.0e-36 156.0 365 38.9
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 6.6e-36 155.6 362 38.7
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 1.1e-35 154.8 387 36.7
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 1.5e-35 154.5 382 35.3
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 1.9e-35 154.1 375 36.0
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 1.9e-35 154.1 381 34.4
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 4.3e-35 152.9 381 37.5
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 5.6e-35 152.5 381 36.2
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 9.5e-35 151.8 374 35.6
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 1.6e-34 151.0 388 36.6
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 1.8e-33 147.5 363 37.7
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 2.3e-33 147.1 397 35.0
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 3.1e-33 146.7 378 35.7
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 8.9e-33 145.2 396 34.1
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 1.2e-32 144.8 386 36.0
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 2.0e-32 144.1 385 34.5
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 2.6e-32 143.7 352 35.5
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 9.8e-32 141.7 366 34.7
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 9.8e-32 141.7 366 34.7
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 9.8e-32 141.7 393 34.4
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 9.8e-32 141.7 385 33.8
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.3e-31 141.4 391 34.5
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 1.3e-31 141.4 399 36.1
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 2.2e-31 140.6 381 34.6
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 4.9e-31 139.4 311 37.3
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 4.9e-31 139.4 385 34.0
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 6.4e-31 139.0 281 44.5
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.4e-30 137.9 350 35.4
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.4e-30 137.9 394 33.8
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 1.4e-30 137.9 400 34.5
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 4.1e-30 136.3 387 35.4
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 7.0e-30 135.6 360 33.6
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 7.0e-30 135.6 374 34.0
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.6e-29 134.4 378 34.7
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 2.0e-29 134.0 390 35.1
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 4.6e-29 132.9 383 33.7
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 6.0e-29 132.5 366 35.2
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 7.8e-29 132.1 335 36.4
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 2.3e-28 130.6 379 33.2
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 3.0e-28 130.2 281 43.1
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 3.9e-28 129.8 378 34.7
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 5.0e-28 129.4 275 43.3
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 6.6e-28 129.0 305 36.4
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 6.6e-28 129.0 353 34.8
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.5e-27 127.9 135 68.1
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 1.9e-27 127.5 375 33.6
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.9e-27 127.5 380 34.2
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 5.6e-27 125.9 312 34.9
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 7.3e-27 125.6 327 38.5
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 1.2e-26 124.8 374 34.5
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 4.7e-26 122.9 302 36.4
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 6.2e-26 122.5 274 42.7
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 6.2e-26 122.5 274 42.7
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 1.8e-25 120.9 345 35.1
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 1.8e-25 120.9 387 31.3
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 3.1e-25 120.2 304 35.2
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 3.1e-25 120.2 303 36.3
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 4.0e-25 119.8 312 34.9
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 4.0e-25 119.8 368 31.8
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 8.9e-25 118.6 367 31.3
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 8.9e-25 118.6 367 31.3
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 1.2e-24 118.2 298 34.9
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 1.5e-24 117.9 345 35.7
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 2.6e-24 117.1 327 37.6
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 7.5e-24 115.5 365 32.3
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 9.8e-24 115.2 337 32.3
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 4.9e-23 112.8 310 35.2
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.4e-22 111.3 356 31.7
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.9e-22 110.9 367 33.2
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 4.1e-22 109.8 275 35.3
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 5.4e-22 109.4 315 33.0
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 1.2e-21 108.2 304 36.5
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 3.5e-21 106.7 343 34.1
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 1.5e-19 101.3 307 35.2
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 2.5e-19 100.5 183 42.1
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 2.5e-19 100.5 302 33.4
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 1.2e-18 98.2 317 32.2
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 1.2e-18 98.2 194 41.2
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 3.6e-18 96.7 336 30.7
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 1.4e-17 94.7 378 30.4
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 6.8e-17 92.4 152 42.1
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 2.2e-15 87.4 223 36.3
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 2.4e-14 84.0 157 39.5
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 1.2e-13 81.6 245 33.9
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 8.6e-12 75.5 171 36.3
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 4.3e-11 73.2 232 34.5


User provided reference genes

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