Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 1.4e-50 203.0 133 100.0
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 6.5e-43 177.6 141 89.4
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.1e-42 176.8 143 86.0
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 4.1e-37 158.3 158 78.5
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 1.7e-35 152.9 116 77.6
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 1.7e-35 152.9 116 77.6
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 5.5e-34 147.9 118 72.9
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 1.6e-33 146.4 118 72.9
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 1.6e-33 146.4 118 72.9
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 1.6e-33 146.4 118 72.9
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 3.6e-33 145.2 119 71.4
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 4.7e-33 144.8 155 74.8
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 6.1e-33 144.4 157 75.2
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 2.0e-31 139.4 115 72.2
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 2.7e-28 129.0 109 68.8
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 4.5e-28 128.3 104 69.2
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 4.5e-28 128.3 104 69.2
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.6e-25 119.8 102 65.7
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 1.4e-24 116.7 69 79.7
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 5.2e-24 114.8 103 67.0
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 2.0e-23 112.8 64 84.4
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 9.8e-23 110.5 109 56.0
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 6.3e-22 107.8 63 77.8
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 2.4e-21 105.9 120 50.8
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 4.1e-21 105.1 101 56.4
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.1e-21 105.1 101 56.4
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 9.1e-21 104.0 105 61.9
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 9.1e-21 104.0 61 82.0
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 1.2e-20 103.6 99 58.6
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 1.6e-20 103.2 66 71.2
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.0e-20 102.8 102 59.8
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.5e-20 102.1 102 58.8
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.5e-20 101.7 105 61.0
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 4.5e-20 101.7 90 63.3
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 7.7e-20 100.9 63 77.8
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 1.0e-19 100.5 58 82.8
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 2.3e-19 99.4 52 88.5
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 8.6e-19 97.4 64 78.1
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 8.6e-19 97.4 103 58.3
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.5e-18 95.9 61 75.4
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 3.3e-18 95.5 72 66.7
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 3.3e-18 95.5 63 76.2
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 5.5e-18 94.7 63 76.2
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 5.5e-18 94.7 48 89.6
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 7.2e-18 94.4 53 83.0
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.2e-17 93.6 53 79.2
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.2e-17 93.6 53 79.2
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 3.6e-17 92.0 47 93.6
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 3.6e-17 92.0 60 73.3
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 4.7e-17 91.7 58 74.1
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 6.1e-17 91.3 54 79.6
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 8.0e-17 90.9 99 54.5
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 1.0e-16 90.5 88 62.5
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 1.4e-16 90.1 108 51.9
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 1.4e-16 90.1 89 59.6
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 1.8e-16 89.7 59 76.3
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 1.8e-16 89.7 70 67.1
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 4.0e-16 88.6 101 52.5
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.2e-16 88.2 60 75.0
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 5.2e-16 88.2 59 72.9
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 6.8e-16 87.8 102 51.0
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 8.9e-16 87.4 79 62.0
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 1.2e-15 87.0 60 68.3
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.5e-15 86.7 62 71.0
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.5e-15 86.7 62 71.0
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.5e-15 86.7 70 67.1
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.5e-15 86.7 70 67.1
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.6e-15 85.9 54 77.8
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 3.4e-15 85.5 64 65.6
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 4.4e-15 85.1 50 82.0
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 9.8e-15 84.0 56 71.4
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 9.8e-15 84.0 114 51.8
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 1.3e-14 83.6 47 83.0
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 1.3e-14 83.6 90 58.9
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 1.3e-14 83.6 50 78.0
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 3.7e-14 82.0 84 54.8
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 3.7e-14 82.0 48 85.4
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 6.3e-14 81.3 54 74.1
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 6.3e-14 81.3 63 69.8
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 6.3e-14 81.3 63 69.8
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 6.3e-14 81.3 109 50.5
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 2.4e-13 79.3 62 69.4
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 2.4e-13 79.3 67 65.7
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 3.2e-13 79.0 42 81.0
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 4.1e-13 78.6 51 76.5
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 4.1e-13 78.6 58 69.0
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 4.1e-13 78.6 44 79.5
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 4.1e-13 78.6 44 79.5
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 4.1e-13 78.6 50 76.0
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 5.4e-13 78.2 86 53.5
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 9.2e-13 77.4 44 79.5
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 9.2e-13 77.4 64 60.9
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 9.2e-13 77.4 59 66.1
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 1.2e-12 77.0 63 60.3
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 1.2e-12 77.0 49 73.5
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 1.6e-12 76.6 39 84.6
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 1.6e-12 76.6 78 57.7
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 1.6e-12 76.6 41 87.8
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 2.0e-12 76.3 45 77.8
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 2.0e-12 76.3 53 73.6
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 2.7e-12 75.9 80 55.0
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 2.7e-12 75.9 48 75.0
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 4.5e-12 75.1 59 64.4
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 5.9e-12 74.7 50 72.0
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 5.9e-12 74.7 43 76.7
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 7.8e-12 74.3 42 81.0
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 7.8e-12 74.3 52 73.1
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 1.0e-11 73.9 127 44.1
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 1.0e-11 73.9 47 74.5
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 1.3e-11 73.6 43 76.7
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 1.3e-11 73.6 94 46.8
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 1.7e-11 73.2 85 51.8
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 2.3e-11 72.8 42 81.0
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 2.9e-11 72.4 35 91.4
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 3.9e-11 72.0 36 88.9
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 5.0e-11 71.6 35 91.4
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 5.0e-11 71.6 35 91.4
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 6.6e-11 71.2 40 82.5
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 6.6e-11 71.2 50 72.0
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 8.6e-11 70.9 36 80.6
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 8.6e-11 70.9 55 63.6
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 1.1e-10 70.5 41 78.0
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 1.9e-10 69.7 80 52.5
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 1.9e-10 69.7 36 80.6
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 9.5e-10 67.4 69 52.2
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 9.5e-10 67.4 35 80.0
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 8.0e-09 64.3 39 71.8
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 1.0e-08 63.9 118 37.3
HPP92_004788 Vanilla planifolia HOM05D005853 ORTHO05D007308 2.9e-06 55.8 42 66.7


User provided reference genes

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